
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/146073/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/HNSC/1552283/1.GDAC_clinicalDataPicker.Finished/HNSC.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=HNSC", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"      "-oT=HNSC"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=293, in cluster file=288, common to both=286
[1]  78 286
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               15               271 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               15               271 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               40               246 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               40               246 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               25               261 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               25               261 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               16               270 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               16               270 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               31               255 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               31               255 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              117               169 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              117               169 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               13               273 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               13               273 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                7               279 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                7               279 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               86               200 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               86               200 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               23               263 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               23               263 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               23               263 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               23               263 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               13               273 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               13               273 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               59               227 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               59               227 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               39               247 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               39               247 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               55               231 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               55               231 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              124               162 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              124               162 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               45               241 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               45               241 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               52               234 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               52               234 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                13                273 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                13                273 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 5                281 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 5                281 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                17                269 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                17                269 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                20                266 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                20                266 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                61                225 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                61                225 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                27                259 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                27                259 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                19                267 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                19                267 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                46                240 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                46                240 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                11                275 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                11                275 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                16                270 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                16                270 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                20                266 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                20                266 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                18                268 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                18                268 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                23                263 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                23                263 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                46                240 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                46                240 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                17                269 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                17                269 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                12                274 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                12                274 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                17                269 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                17                269 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                56                230 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                56                230 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                58                228 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                58                228 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 9                277 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 9                277 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                33                253 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                33                253 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               24               262 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               24               262 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                7               279 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                7               279 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5               281 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5               281 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                8               278 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                8               278 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              115               171 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              115               171 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               11               275 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               11               275 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               67               219 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               67               219 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               42               244 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               42               244 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               12               274 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               12               274 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               63               223 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               63               223 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               27               259 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               27               259 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               28               258 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               28               258 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                6               280 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                6               280 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               20               266 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               20               266 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               63               223 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               63               223 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               10               276 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               10               276 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               82               204 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               82               204 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               27               259 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               27               259 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                43                243 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                43                243 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                28                258 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                28                258 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                52                234 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                52                234 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                76                210 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                76                210 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                14                272 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                14                272 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                13                273 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                13                273 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                59                227 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                59                227 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                14                272 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                14                272 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                25                261 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                25                261 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                16                270 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                16                270 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                23                263 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                23                263 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                40                246 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                40                246 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 8                278 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 8                278 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                37                249 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                37                249 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                79                207 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                79                207 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                30                256 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                30                256 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                22                264 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                22                264 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                15                271 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                15                271 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 6                280 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 6                280 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                54                232 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                54                232 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                23                263 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                23                263 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "NEOADJUVANTTHERAPY"                    
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 286 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
         461          283          415          489          276          248 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
         190          845         1761          186          179          242 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        1635         1747          152          244           NA           63 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
          NA          113          236          186         2891          275 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
         140          133          557          192          412          310 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
         142          194          325          166          343          383 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
         522          369          395          240          436          348 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
         810          875          397          279          289          173 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
         377          866          252          493          351          360 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
         352          380           NA          413          274          207 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
         228          143          154          201          159           45 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
         134           97          276          201          188          224 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
          42          177           83          119           NA          114 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
         100           46         1465         1207          654           NA 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 
        1183          841          896         1028          317          128 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
         870           NA         1000         1057          984           NA 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 
          NA           NA          814         1006          693         2562 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
         358         1662         1152          798         1777         1521 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
          NA         1050         1125           NA          514           NA 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
         362          311          345          354          233          379 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
         350          479           NA         1435         1190         1440 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
        1244           NA          104           NA          759          889 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
          30          972           NA         1036           NA          796 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
          NA          997         1430           NA          392          907 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
         913          946          908          898          929          216 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
         156          180         1077          910         1471         4115 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
         522         3930         3295         1438          584          546 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
        2732         2663         2326         2567         1969          519 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
         406          540         1736         1478         1007          215 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
        1315         1246          405          743          179           NA 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
          NA           NA         3835           NA           NA           NA 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
        3836         3380           NA           NA           NA           NA 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
          NA         3496         1724           NA         1444         1095 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
         797           NA           NA           NA           NA           NA 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
          NA           NA         1099           NA           NA           NA 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
        4334           NA           NA           NA          316          321 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
         236          828          403          325          250          238 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
          77          152          153          127         1149         1058 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 
         516          477          548           NA          360          299 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7831 
          35           30            2            5           25           NA 
TCGA-HD-7832 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
          NA          160          122          113 
Variable 1:'AGE':	nDistinctValues=56,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=114,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=187,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=20,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=93,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "PATHOLOGY.T"                           
[4] "PATHOLOGY.N"                           
[5] "PATHOLOGICSPREAD(M)"                   
[6] "RADIATIONS.RADIATION.REGIMENINDICATION"
[7] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 286 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=56, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 19  79  76 102 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 19  79  76 102 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 19  79  76 102 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 19  79  76 102 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
112  44 105   4 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
112  44 105   4 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
112  44 105   4 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
112  44 105   4 
PATHOLOGICSPREAD(M), nv=2, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    10   5
  1P GAIN WILD-TYPE 155 114
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               15               269 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                5               114 
$`1P GAIN MUTATED`
TCGA-BA-6870 TCGA-BA-7269 TCGA-CN-4727 TCGA-CR-6472 TCGA-CR-6482 TCGA-CR-7368 
       14.79         7.76         6.38        34.52        11.34        40.90 
TCGA-CR-7373 TCGA-CV-5442 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-7101 TCGA-CV-7407 
       29.23        76.47        57.07        33.11         5.23        35.54 
TCGA-CV-7422 TCGA-CV-7437 TCGA-DQ-5625 
       34.09        16.60        34.78 

$`1P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 
       53.75        57.44         5.00         8.02         2.07        12.99 
TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        3.72         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 
       18.31         6.31        13.55        10.19         4.67        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       33.80        10.42         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 
       16.90         6.02        11.90        10.22        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 
       47.34        35.84         3.42         3.06        24.95         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       87.55        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       48.59         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7410 
       11.87        47.97         2.10        36.13        18.41       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
        0.07       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        5.03         4.18        37.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 
       14.04        11.84         9.83         1.15         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.16         0.82         5.26         4.01         3.72 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             5.23              0.07 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            76.47            210.94 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            33.11             13.35 
[1] "5.2 - 76.5 (33.1)"  "0.1 - 210.9 (13.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D1V2, continuous
D1V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      6    9
  1P GAIN WILD-TYPE   75  196
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE               6                75
  MALE                 9               196
D1V4, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1               0                19
  T2               4                75
  T3               3                73
  T4               6                96
D1V5, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0               3               109
  N1               7                37
  N2               1               104
  N3               0                 4
D1V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     14    1
  1P GAIN WILD-TYPE  268    2
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0              14               268
  M1               1                 2
D1V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      4   11
  1P GAIN WILD-TYPE   72  199
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                4                72
  YES              11               199
D1V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      3   12
  1P GAIN WILD-TYPE   44  227
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                3                44
  YES              12               227

Clustering(2) Variable = 1q gain mutation analysis
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED    22  18
  1Q GAIN WILD-TYPE 143 101
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               40               244 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               18               101 
$`1Q GAIN MUTATED`
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-7269 TCGA-BB-4227 TCGA-CN-4727 TCGA-CN-4735 
       14.79         2.07         7.76         4.37         6.38        12.13 
TCGA-CN-5367 TCGA-CN-5374 TCGA-CN-6013 TCGA-CN-6023 TCGA-CR-6472 TCGA-CR-6482 
       11.57         9.01         5.06         6.18        34.52        11.34 
TCGA-CR-7370 TCGA-CR-7390 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5440 
        3.42        29.82       135.29        17.16       108.33        89.82 
TCGA-CV-5442 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6951 
       76.47        33.11        43.23         9.70         5.46        30.05 
TCGA-CV-6956 TCGA-CV-6962 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7250 
        7.13         4.14         5.23        21.76        71.21        95.34 
TCGA-CV-7254 TCGA-CV-7407 TCGA-CV-7422 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7086 
       47.97        35.54        34.09        16.60        21.99         7.76 
TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-HD-7754 
        4.18        34.78        16.96         0.82 

$`1Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         5.00         8.02        12.99         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-CN-4722 
        6.12        95.05         9.04         4.60        18.31         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       13.55        10.19         4.67        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
       12.49         8.52        13.58         6.81         7.50         4.70 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.61         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       32.35        13.25         4.21        14.96        26.76        33.07 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       58.42        50.01        39.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
        6.02        11.90        10.22        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 
       35.41        29.92        48.36       129.21        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       17.95        87.55        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 
       17.75        57.07        48.59         7.07        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6938 
       24.43         5.88        90.08         2.14        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       42.35        15.06         6.08        53.92        65.82        10.98 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        8.38        28.31         2.50        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       12.89        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 
       36.00        26.20        18.97        17.10         4.96        11.87 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
        2.10        36.13        18.41       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 
        0.46        22.85        25.02        25.94         0.07       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 
       84.49        19.73         7.13       142.49         6.38        10.39 
TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
       10.55        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 
        2.53         5.00         5.03        37.78        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 
       14.04        11.84         9.83         1.15         0.99         0.07 
TCGA-HD-7753 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.16         5.26         4.01         3.72 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.82              0.07 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           135.29            210.94 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           15.695            13.610 
[1] "0.8 - 135.3 (15.7)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D2V2, continuous
D2V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     11   29
  1Q GAIN WILD-TYPE   70  176
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              11                70
  MALE                29               176
D2V4, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1               0                19
  T2              13                66
  T3              11                65
  T4              14                88
D2V5, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0               9               103
  N1               8                36
  N2              17                88
  N3               0                 4
D2V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     38    2
  1Q GAIN WILD-TYPE  244    1
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0              38               244
  M1               2                 1
D2V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     15   25
  1Q GAIN WILD-TYPE   61  185
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO               15                61
  YES              25               185
D2V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      8   32
  1Q GAIN WILD-TYPE   39  207
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO                8                39
  YES              32               207

Clustering(3) Variable = 2p gain mutation analysis
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED    17   8
  2P GAIN WILD-TYPE 148 111
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               25               259 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                8               111 
$`2P GAIN MUTATED`
TCGA-CN-4727 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CQ-5329 TCGA-CR-5247 
        6.38         6.18         1.38         5.82        27.65        11.77 
TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5440 TCGA-CV-6933 
       29.82         5.13         5.92       135.29        89.82        90.08 
TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6962 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7250 
       11.24        15.06         4.14        71.21        56.68        95.34 
TCGA-CV-7261 TCGA-CV-7421 TCGA-CV-7437 TCGA-D6-6516 TCGA-DQ-5629 TCGA-DQ-7592 
       36.13         0.07        16.60        10.68        16.96         9.83 
TCGA-HD-7753 
        0.16 

$`2P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
        4.60         4.37        18.31         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6992 TCGA-CN-6994 
        3.19         9.07         6.61         7.36         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        38.89        29.46        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       84.23        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7401 
       31.10        29.85        29.52        30.54         7.10        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       29.92        48.36        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 
       26.43       126.08        19.79        12.03        42.35        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
       28.31         2.50        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 
       12.89        21.76        10.75       114.94         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 
       36.00        26.20        18.97        17.10         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
       47.97         2.10        18.41        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 
        9.67         0.46        22.85        25.02        25.94        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 
       16.27        84.49        19.73         7.13       142.49         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 
       37.78        34.78        15.68        18.02        14.04        11.84 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 
        1.15         0.99         0.07         0.82         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.07              0.07 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           135.29            210.94 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            11.77             14.04 
[1] "0.1 - 135.3 (11.8)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D3V2, continuous
D3V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      4   21
  2P GAIN WILD-TYPE   77  184
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE               4                77
  MALE                21               184
D3V4, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1               2                17
  T2               3                76
  T3               9                67
  T4              11                91
D3V5, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0              11               101
  N1               2                42
  N2              10                95
  N3               0                 4
D3V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     25    0
  2P GAIN WILD-TYPE  257    3
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0              25               257
  M1               0                 3
D3V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      7   18
  2P GAIN WILD-TYPE   69  192
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                7                69
  YES              18               192
D3V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      5   20
  2P GAIN WILD-TYPE   42  219
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                5                42
  YES              20               219

Clustering(4) Variable = 2q gain mutation analysis
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    10   6
  2Q GAIN WILD-TYPE 155 113
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               16               268 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                6               113 
$`2Q GAIN MUTATED`
TCGA-CN-4727 TCGA-CQ-5329 TCGA-CR-5247 TCGA-CR-7370 TCGA-CV-5430 TCGA-CV-5434 
        6.38        27.65        11.77         3.42       135.29       108.33 
TCGA-CV-5440 TCGA-CV-6933 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6962 TCGA-CV-7235 
       89.82        90.08        11.24        15.06         4.14        56.68 
TCGA-CV-7250 TCGA-CV-7261 TCGA-DQ-5629 TCGA-DQ-7592 
       95.34        36.13        16.96         9.83 

$`2Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
        4.60         4.37        18.31         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        10.42         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       26.76        33.07        22.78        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 
       47.18        39.12        47.34        40.90        35.84         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       48.36        17.16       129.21        47.28        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 
       40.96        13.32        24.43         5.88         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 
        5.46        20.52         4.70        21.86        26.43       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        42.35        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       71.21        10.75       114.94         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       26.20        18.97        17.10         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
        2.10        18.41        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        5.03         4.18        37.78        34.78        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 
       14.04        11.84         1.15         0.99         0.07         0.16 
TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         5.26         4.01         3.72 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             3.42              0.07 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           135.29            210.94 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           22.305            13.565 
[1] "3.4 - 135.3 (22.3)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D4V2, continuous
D4V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      2   14
  2Q GAIN WILD-TYPE   79  191
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE               2                79
  MALE                14               191
D4V4, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1               0                19
  T2               3                76
  T3               6                70
  T4               7                95
D4V5, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0               7               105
  N1               2                42
  N2               6                99
  N3               0                 4
D4V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     16    0
  2Q GAIN WILD-TYPE  266    3
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0              16               266
  M1               0                 3
D4V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      6   10
  2Q GAIN WILD-TYPE   70  200
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                6                70
  YES              10               200
D4V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      3   13
  2Q GAIN WILD-TYPE   44  226
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                3                44
  YES              13               226

Clustering(5) Variable = 3p gain mutation analysis
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    21  10
  3P GAIN WILD-TYPE 144 109
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               31               253 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               10               109 
$`3P GAIN MUTATED`
TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 
       16.08         9.07        57.90        57.44         2.07        95.05 
TCGA-BB-4225 TCGA-CN-4727 TCGA-CN-4739 TCGA-CN-6010 TCGA-CN-6013 TCGA-CN-6021 
        4.60         6.38        11.44         6.81         5.06         9.07 
TCGA-CN-6023 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CR-6470 TCGA-CR-6474 TCGA-CR-6487 
        6.18        34.75        13.25        50.01        18.51         7.66 
TCGA-CR-6488 TCGA-CR-7368 TCGA-CR-7385 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5977 
       12.46        40.90        32.78        76.47        64.73        33.11 
TCGA-CV-6003 TCGA-CV-6951 TCGA-CV-7178 TCGA-CV-7254 TCGA-CV-7414 TCGA-CX-7082 
       40.96        30.05        71.21        47.97         0.46        10.39 
TCGA-DQ-5624 
       37.78 

$`3P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        13.64         8.15         6.25        27.78 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
        6.12         5.88         7.96        53.75         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 
       14.79        12.99         3.72         7.76         6.12         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        4.37        18.31         6.31        13.55        10.19         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99         7.89        14.33        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 
       13.58         9.01         7.50         4.70         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 
        1.48         4.41         3.19         6.61         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        29.46        33.80        10.42         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.35        32.88        32.35         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 
       26.24        58.42        39.52        34.52        36.99        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6491 
        6.02        11.90        10.22        11.34        11.64        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 
       15.75         9.27        47.18        39.12        47.34        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 
        9.17        34.06        19.92        26.17        17.13        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 
       47.28        19.20        17.95        89.82        87.55        84.39 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       17.06        13.35        17.75        57.07        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       43.23        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        11.87         2.10        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 
       35.54       210.94        89.33         9.67        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 
        7.13       142.49        16.60         6.38        21.99        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 
        2.53         5.00         5.03         4.18        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 
       15.68        18.02        14.04        11.84         9.83         1.15 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         0.07         0.16         0.82         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.46              0.07 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            95.05            210.94 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            18.51             13.58 
[1] "0.5 - 95.0 (18.5)"  "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D5V2, continuous
D5V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      7   24
  3P GAIN WILD-TYPE   74  181
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE               7                74
  MALE                24               181
D5V4, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1               2                17
  T2              11                68
  T3               5                71
  T4              12                90
D5V5, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0               8               104
  N1               7                37
  N2              15                90
  N3               0                 4
D5V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     30    1
  3P GAIN WILD-TYPE  252    2
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0              30               252
  M1               1                 2
D5V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     11   20
  3P GAIN WILD-TYPE   65  190
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO               11                65
  YES              20               190
D5V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      9   22
  3P GAIN WILD-TYPE   38  217
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                9                38
  YES              22               217

Clustering(6) Variable = 3q gain mutation analysis
D6V1, survival
                   sevent
clus2                0  1
  3Q GAIN MUTATED   75 42
  3Q GAIN WILD-TYPE 90 77
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              117               167 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               42                77 
$`3Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5559 
        9.30        16.08         9.07         6.25        57.90        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4223 
        5.00         8.02         2.07        12.99         7.76        95.05 
TCGA-BB-4225 TCGA-BB-4227 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        4.60         4.37        13.55         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4741 
        5.46        11.28        12.59         7.89        11.44        28.77 
TCGA-CN-5356 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
        9.50        12.39        28.47        13.58         9.01         6.81 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6023 
        4.70         5.06         4.41         3.19         9.07         6.18 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5329 
        1.38         5.82         2.73         1.51        48.16        27.65 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-5247 
       32.35        32.88        34.75        13.25        14.96        11.77 
TCGA-CR-5248 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       54.64        58.42        50.01        36.99        18.51        16.90 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-7365 TCGA-CR-7368 
       11.90        10.22         7.66        12.46        39.12        40.90 
TCGA-CR-7369 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7385 TCGA-CR-7389 TCGA-CR-7390 
       35.84        24.95         0.99        32.78        12.89        29.82 
TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 
        5.92        29.92        48.36       135.29       129.21       108.33 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5970 
       19.20        17.95        89.82        76.47        64.73        13.35 
TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6933 
       57.07        33.11         7.07        40.96        13.32        90.08 
TCGA-CV-6935 TCGA-CV-6940 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-7091 
        9.70        26.43        42.35        15.06        30.05       111.12 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7178 TCGA-CV-7245 
        9.01         5.23         1.84        52.31        71.21        26.20 
TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7414 
       95.34        11.87        47.97         2.10        36.13         0.46 
TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7430 
       22.85         0.07        34.09       100.54        14.86        16.27 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CX-7082 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6825 
       19.73         7.13        10.39         8.22         7.82         5.00 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-HD-7754 
       37.78        16.96         0.82 

$`3Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 
       15.16        13.64         8.15        27.78         6.12         5.88 
TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6870 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4224 
        7.96        53.75        14.79         3.72         6.12         9.04 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       18.31         6.31        10.19        17.16        12.13        12.99 
TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5363 
       14.33        26.63        13.05         9.17         5.69         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-6011 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6022 TCGA-CN-6024 
        7.50         6.61         5.23         1.48         6.61         7.36 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CQ-5324 TCGA-CQ-5325 
        3.91         3.68         3.75         3.29        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 
        2.93        38.89        29.46        33.80        10.42         4.21 
TCGA-CQ-6218 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       28.60        32.35         4.21        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6478 
       84.23        37.87        26.24        39.52        34.52         6.02 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
       11.34        11.64        11.51        15.75         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 
       47.34         3.42         3.06        29.23        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 
       34.06        19.92        26.17        17.13        47.01        27.02 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7401 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5441 TCGA-CV-5443 
        5.13        35.41        17.16        47.28        87.55        84.39 
TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 
       17.06        17.75        48.59        43.23        24.43         5.88 
TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 
        2.14         5.46        20.52         4.70        21.86        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
      126.08        19.79        12.03         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7104 
       64.80       126.12        18.81        12.66         7.99        12.89 
TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       21.76        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7263 TCGA-CV-7407 
       36.00        18.97        17.10         4.96        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7425 
      210.94        89.33         9.67        25.02        25.94        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7435 TCGA-CV-7437 
      156.49        54.90         3.48        84.49       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
        6.38        21.99        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5630 
       10.68         2.53         5.03         4.18        34.78        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 
       18.02        14.04        11.84         9.83         1.15         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.07         0.16         5.26         4.01         3.72 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.07              0.07 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           135.29            210.94 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            13.55             14.33 
[1] "0.1 - 135.3 (13.6)" "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D6V2, continuous
D6V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     23   94
  3Q GAIN WILD-TYPE   58  111
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              23                58
  MALE                94               111
D6V4, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1               7                12
  T2              29                50
  T3              34                42
  T4              42                60
D6V5, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0              40                72
  N1              20                24
  N2              48                57
  N3               2                 2
D6V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED    116    1
  3Q GAIN WILD-TYPE  166    2
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0             116               166
  M1               1                 2
D6V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     37   80
  3Q GAIN WILD-TYPE   39  130
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO               37                39
  YES              80               130
D6V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     23   94
  3Q GAIN WILD-TYPE   24  145
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO               23                24
  YES              94               145

Clustering(7) Variable = 4p gain mutation analysis
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED     9   4
  4P GAIN WILD-TYPE 156 115
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               13               271 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                4               115 
$`4P GAIN MUTATED`
TCGA-BA-7269 TCGA-BB-4225 TCGA-CN-4737 TCGA-CQ-6224 TCGA-CV-5973 TCGA-CV-5976 
        7.76         4.60         7.89        32.35        57.07        48.59 
TCGA-CV-5977 TCGA-CV-6954 TCGA-CV-7102 TCGA-CV-7255 TCGA-CV-7414 TCGA-DQ-5625 
       33.11        65.82         1.84         2.10         0.46        34.78 
TCGA-DQ-7592 
        9.83 

$`4P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
       12.99         3.72         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       18.31         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       33.80        10.42         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       34.75        13.25         4.21        14.96        26.76        33.07 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5978 TCGA-CV-5979 
       64.73        17.06        13.35        17.75         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       30.05         6.08        53.92        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         5.23        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        11.87        47.97        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 
       35.54       210.94        89.33         9.67        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-F7-7848 
       16.96        15.68        18.02        14.04        11.84         1.15 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         0.07         0.16         0.82         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             0.46              0.07 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            65.82            210.94 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             9.83             14.04 
[1] "0.5 - 65.8 (9.8)"   "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D7V2, continuous
D7V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      4    9
  4P GAIN WILD-TYPE   77  196
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               4                77
  MALE                 9               196
D7V4, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1               0                19
  T2               4                75
  T3               4                72
  T4               5                97
D7V5, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0               3               109
  N1               4                40
  N2               6                99
  N3               0                 4
D7V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED     13    0
  4P GAIN WILD-TYPE  269    3
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  M0              13               269
  M1               0                 3
D7V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      4    9
  4P GAIN WILD-TYPE   72  201
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                4                72
  YES               9               201
D7V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      3   10
  4P GAIN WILD-TYPE   44  229
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                3                44
  YES              10               229

Clustering(8) Variable = 4q gain mutation analysis
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     4   3
  4Q GAIN WILD-TYPE 161 116
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                7               277 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3               116 
$`4Q GAIN MUTATED`
TCGA-BB-4225 TCGA-CV-5436 TCGA-CV-5977 TCGA-CV-7102 TCGA-CV-7245 TCGA-CV-7415 
        4.60        19.20        33.11         1.84        26.20        22.85 
TCGA-DQ-5625 
       34.78 

$`4Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        4.37        18.31         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        29.46        33.80        10.42         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       14.96        26.76        33.07        22.78        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      129.21       108.33        47.28        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       57.07        48.59         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         9.01         5.23        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       47.47        36.00        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5629 
        2.53         5.00         5.03         4.18        37.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 
       15.68        18.02        14.04        11.84         9.83         1.15 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         0.07         0.16         0.82         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             1.84              0.07 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            34.78            210.94 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            22.85             13.58 
[1] "1.8 - 34.8 (22.9)"  "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D8V2, continuous
D8V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      2    5
  4Q GAIN WILD-TYPE   79  200
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               2                79
  MALE                 5               200
D8V4, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               0                19
  T2               1                78
  T3               4                72
  T4               2               100
D8V5, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0               2               110
  N1               1                43
  N2               4               101
  N3               0                 4
D8V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      7    0
  4Q GAIN WILD-TYPE  275    3
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0               7               275
  M1               0                 3
D8V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      0    7
  4Q GAIN WILD-TYPE   76  203
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                0                76
  YES               7               203
D8V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      0    7
  4Q GAIN WILD-TYPE   47  232
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                0                47
  YES               7               232

Clustering(9) Variable = 5p gain mutation analysis
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED    50  34
  5P GAIN WILD-TYPE 115  85
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               84               200 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               34                85 
$`5P GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       15.16         9.30         6.12        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4223 
        8.02        14.79        12.99         3.72         7.76        95.05 
TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4730 
        4.37        18.31        13.55         6.38         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-5366 TCGA-CN-6011 TCGA-CN-6023 
       12.59        12.99        14.33        11.84         7.50         6.18 
TCGA-CN-6988 TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5330 TCGA-CQ-6221 TCGA-CQ-6224 
        1.38         3.91         3.29        29.46        32.88        32.35 
TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 
       84.23        54.64        58.42        39.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6488 TCGA-CR-7368 TCGA-CR-7374 TCGA-CR-7389 
       16.90         6.02        12.46        40.90         0.99        12.89 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5435 
        7.10         5.13         5.92        48.36       108.33        47.28 
TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5973 TCGA-CV-5979 
       17.95        76.47        17.06        13.35        57.07        43.23 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6941 TCGA-CV-6954 
        5.88        90.08         5.46        20.52        11.24        65.82 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7102 
        7.13         8.38         2.50       111.12        18.81         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7242 TCGA-CV-7245 
       52.31        12.89        71.21        56.68        36.00        26.20 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6517 
       25.02         0.07       100.54        16.60         7.76         8.22 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-HD-7753 TCGA-IQ-7630 
       16.96        15.68        18.02         9.83         0.16         5.26 

$`5P GAIN WILD-TYPE`
TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       13.64        16.08         9.07         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-6871 TCGA-BB-4217 TCGA-BB-4224 
       57.90         5.88         7.96         2.07         6.12         9.04 
TCGA-BB-4225 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4733 
        4.60         6.31        10.19         4.67        10.68        17.16 
TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.13         7.89        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.54        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 
        1.48         4.41         3.19         9.07         6.61         7.36 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 
        5.82         2.73         3.68         3.75         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 
       39.68        21.50         2.93        38.89        27.65        33.80 
TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 
       10.42         4.21        28.60        32.35        34.75        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5247 
        4.21        14.96        26.76        33.07        22.78        11.77 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6480 TCGA-CR-6481 
       37.87        26.24        50.01        34.52        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.34        11.64         7.66        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       47.18        39.12        47.34        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        27.02        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7401 
       30.02        31.10        29.85        29.52        30.54        35.41 
TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5440 
       29.92       135.29        17.16       129.21        19.20        89.82 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 
       87.55        84.39        64.73        17.75        48.59        33.11 
TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 
        7.07        40.96        13.32        24.43         2.14         9.70 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        26.43       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 
       42.35        15.06        30.05         6.08        53.92        10.98 
TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7099 
       28.31         4.14        64.80       126.12        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 
        9.01         5.23        21.76        10.75       114.94         4.73 
TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       47.47        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
       47.97         2.10        36.13        18.41        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7422 
       89.33         9.67         0.46        22.85        25.94        34.09 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13       142.49         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6823 
       10.39        10.55        27.22        13.25        10.68         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 
       14.04        11.84         1.15         0.99         0.07         0.82 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.07              0.07 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           111.12            210.94 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            13.94             13.84 
[1] "0.1 - 111.1 (13.9)" "0.1 - 210.9 (13.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     20   66
  5P GAIN WILD-TYPE   61  139
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              20                61
  MALE                66               139
D9V4, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1               3                16
  T2              24                55
  T3              26                50
  T4              30                72
D9V5, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0              28                84
  N1              17                27
  N2              34                71
  N3               1                 3
D9V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     84    1
  5P GAIN WILD-TYPE  198    2
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0              84               198
  M1               1                 2
D9V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     25   61
  5P GAIN WILD-TYPE   51  149
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO               25                51
  YES              61               149
D9V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     15   71
  5P GAIN WILD-TYPE   32  168
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO               15                32
  YES              71               168

Clustering(10) Variable = 5q gain mutation analysis
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    15   6
  5Q GAIN WILD-TYPE 150 113
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               21               263 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                6               113 
$`5Q GAIN MUTATED`
TCGA-BB-4223 TCGA-BB-4227 TCGA-CN-5366 TCGA-CN-6011 TCGA-CN-6023 TCGA-CQ-5330 
       95.05         4.37        11.84         7.50         6.18        29.46 
TCGA-CQ-6224 TCGA-CR-5243 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-7389 
       32.35        84.23        58.42        39.52        36.99        12.89 
TCGA-CR-7397 TCGA-CV-5979 TCGA-CV-6937 TCGA-CV-6954 TCGA-CV-7102 TCGA-CV-7235 
        7.10        43.23        20.52        65.82         1.84        56.68 
TCGA-CV-7245 TCGA-CV-7416 TCGA-DQ-5630 
       26.20        25.02        15.68 

$`5Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4225 
       12.99         3.72         7.76         6.12         9.04         4.60 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       18.31         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
        8.28        16.21        11.54        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
       13.58         9.01         6.81         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 
        2.93        38.89        27.65        33.80        10.42         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 
       28.60        32.35        32.88        34.75        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5247 TCGA-CR-5248 
       14.96        26.76        33.07        22.78        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 
       37.87        26.24        50.01        34.52        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        27.02        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7398 
       30.02        31.10        29.85        29.52        30.54         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 
       17.75        57.07        48.59        33.11         7.07        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
        5.46         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       53.92        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.23        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       71.21        10.75       114.94         4.73        47.47        36.00 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
        2.10        36.13        18.41        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5631 
        5.03         4.18        37.78        34.78        16.96        18.02 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 
       14.04        11.84         9.83         1.15         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.16         0.82         5.26         4.01         3.72 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             1.84              0.07 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            95.05            210.94 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            26.20             13.35 
[1] "1.8 - 95.0 (26.2)"  "0.1 - 210.9 (13.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "2"  
D10V2, continuous
D10V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      3   20
  5Q GAIN WILD-TYPE   78  185
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE               3                78
  MALE                20               185
D10V4, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1               0                19
  T2               8                71
  T3               6                70
  T4               8                94
D10V5, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0               6               106
  N1               5                39
  N2              11                94
  N3               0                 4
D10V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     23    0
  5Q GAIN WILD-TYPE  259    3
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0              23               259
  M1               0                 3
D10V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      9   14
  5Q GAIN WILD-TYPE   67  196
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                9                67
  YES              14               196
D10V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      6   17
  5Q GAIN WILD-TYPE   41  222
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                6                41
  YES              17               222

Clustering(11) Variable = 6p gain mutation analysis
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    15   8
  6P GAIN WILD-TYPE 150 111
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               23               261 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                8               111 
$`6P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-6869 TCGA-BB-4224 TCGA-CN-5356 TCGA-CN-5363 
        9.30         6.12         8.02         9.04         9.50         8.28 
TCGA-CN-6989 TCGA-CQ-5329 TCGA-CQ-5334 TCGA-CR-6480 TCGA-CR-7368 TCGA-CR-7402 
        5.82        27.65         4.21        11.90        40.90        29.92 
TCGA-CV-5430 TCGA-CV-5442 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6954 TCGA-CV-7235 
      135.29        76.47        40.96        90.08        65.82        56.68 
TCGA-CV-7255 TCGA-CV-7407 TCGA-CV-7434 TCGA-DQ-5625 TCGA-HD-7229 
        2.10        35.54         7.13        34.78         0.07 

$`6P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        16.08         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78        57.90         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        5.00        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 
        6.12        95.05         4.60         4.37        18.31         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39        28.47        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        1.38         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       29.46        33.80        10.42        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       18.51        16.90         6.02        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       39.12        47.34        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5431 
        7.10         5.13         5.92        35.41        48.36        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       87.55        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       57.07        48.59        33.11         7.07        43.23        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       71.21        10.75       114.94         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       47.97        36.13        18.41       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.73       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        4.18        37.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7753 TCGA-HD-7754 
       11.84         9.83         1.15         0.99         0.16         0.82 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.07              0.07 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           135.29            210.94 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            11.90             14.04 
[1] "0.1 - 135.3 (11.9)" "0.1 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D11V2, continuous
D11V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      6   17
  6P GAIN WILD-TYPE   75  188
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE               6                75
  MALE                17               188
D11V4, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1               0                19
  T2               6                73
  T3               8                68
  T4               8                94
D11V5, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0              10               102
  N1               5                39
  N2               5               100
  N3               1                 3
D11V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     23    0
  6P GAIN WILD-TYPE  259    3
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0              23               259
  M1               0                 3
D11V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      3   20
  6P GAIN WILD-TYPE   73  190
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                3                73
  YES              20               190
D11V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      1   22
  6P GAIN WILD-TYPE   46  217
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                1                46
  YES              22               217

Clustering(12) Variable = 6q gain mutation analysis
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED     7   6
  6Q GAIN WILD-TYPE 158 113
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               13               271 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                6               113 
$`6Q GAIN MUTATED`
TCGA-CN-5363 TCGA-CN-5367 TCGA-CQ-5334 TCGA-CV-5430 TCGA-CV-5441 TCGA-CV-5442 
        8.28        11.57         4.21       135.29        87.55        76.47 
TCGA-CV-5973 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-7255 TCGA-CV-7434 TCGA-DQ-5625 
       57.07        40.96        90.08         2.10         7.13        34.78 
TCGA-HD-7229 
        0.07 

$`6Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
        4.60         4.37        18.31         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 
       12.39        28.47        16.21        11.54        11.84        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       29.46        33.80        10.42        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.06        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       29.92        48.36        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       19.20        17.95        89.82        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       13.35        17.75        48.59        33.11         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       13.32        24.43         5.88         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        11.87        47.97        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
       19.73       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        15.68        18.02        14.04        11.84         9.83 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 
        1.15         0.99         0.16         0.82         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.07              0.07 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           135.29            210.94 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            34.78             13.64 
[1] "0.1 - 135.3 (34.8)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D12V2, continuous
D12V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      6    7
  6Q GAIN WILD-TYPE   75  198
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE               6                75
  MALE                 7               198
D12V4, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1               0                19
  T2               2                77
  T3               3                73
  T4               8                94
D12V5, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0               3               109
  N1               6                38
  N2               3               102
  N3               1                 3
D12V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     13    0
  6Q GAIN WILD-TYPE  269    3
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0              13               269
  M1               0                 3
D12V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      3   10
  6Q GAIN WILD-TYPE   73  200
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                3                73
  YES              10               200
D12V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      1   12
  6Q GAIN WILD-TYPE   46  227
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                1                46
  YES              12               227

Clustering(13) Variable = 7p gain mutation analysis
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    34  25
  7P GAIN WILD-TYPE 131  94
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               59               225 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               25                94 
$`7P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5555 TCGA-CN-4730 TCGA-CN-4737 
        9.30        13.64         8.15         6.12        11.28         7.89 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6023 TCGA-CN-6024 
        7.50         4.70         5.06         6.61         6.18         7.36 
TCGA-CQ-5329 TCGA-CQ-6225 TCGA-CQ-7068 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-7364 
       27.65        13.25        22.78        18.51        16.90        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7390 TCGA-CR-7398 
       39.12        47.34        19.92        26.17        29.82         5.13 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5440 
      135.29        17.16       129.21       108.33        19.20        89.82 
TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-6936 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 
       76.47        64.73         5.46        15.06        30.05        53.92 
TCGA-CV-6954 TCGA-CV-6962 TCGA-CV-7101 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7235 
       65.82         4.14         5.23        21.76        71.21        56.68 
TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7424 
       18.97        47.97         2.10        25.02       100.54        14.86 
TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6827 TCGA-DQ-5625 
       16.60        21.99         7.76        10.68         4.18        34.78 
TCGA-DQ-5629 TCGA-DQ-7592 TCGA-HD-7229 TCGA-HD-7753 TCGA-IQ-7631 
       16.96         9.83         0.07         0.16         4.01 

$`7P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       15.16        16.08         9.07         6.25        27.78        57.90 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
        5.88         7.96        53.75        57.44         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
       14.79         2.07        12.99         3.72         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 
       95.05         9.04         4.60         4.37        18.31         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.13        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 
       38.89        29.46        33.80        10.42         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        32.88        34.75        32.35         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       26.76        33.07        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7368 TCGA-CR-7369 
       12.46        11.51        15.75         9.27        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
        9.17        34.06        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5435 
        7.10         5.92        35.41        29.92        48.36        47.28 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       17.95        87.55        84.39        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 
       19.79        12.03        42.35         6.08        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        8.38        28.31         2.50        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 
       18.81        12.66         7.99         9.01         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       12.89        10.75       114.94         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7261 
       26.20        17.10        95.34         4.96        11.87        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       18.41        35.54       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7427 
       22.85        25.94         0.07        34.09        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
      142.49         6.38        10.39        10.55        27.22        13.25 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-DQ-5624 
        8.22         7.82         2.53         5.00         5.03        37.78 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-F7-7848 TCGA-H7-7774 
       15.68        18.02        14.04        11.84         1.15         0.99 
TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7632 
        0.82         5.26         3.72 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.07              0.07 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           135.29            210.94 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            16.96             13.25 
[1] "0.1 - 135.3 (17.0)" "0.1 - 210.9 (13.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D13V2, continuous
D13V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     13   46
  7P GAIN WILD-TYPE   68  159
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              13                68
  MALE                46               159
D13V4, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1               2                17
  T2              15                64
  T3              18                58
  T4              23                79
D13V5, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0              25                87
  N1               7                37
  N2              22                83
  N3               0                 4
D13V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     59    0
  7P GAIN WILD-TYPE  223    3
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0              59               223
  M1               0                 3
D13V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     19   40
  7P GAIN WILD-TYPE   57  170
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO               19                57
  YES              40               170
D13V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     11   48
  7P GAIN WILD-TYPE   36  191
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO               11                36
  YES              48               191

Clustering(14) Variable = 7q gain mutation analysis
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    24  15
  7Q GAIN WILD-TYPE 141 104
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               39               245 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               15               104 
$`7Q GAIN MUTATED`
TCGA-BA-5555 TCGA-CN-4727 TCGA-CN-5360 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        6.12         6.38        28.47         7.50         4.70         5.06 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CQ-6225 TCGA-CQ-7068 TCGA-CR-7390 TCGA-CV-5430 
        7.36         5.82        13.25        22.78        29.82       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 
       17.16       129.21       108.33        89.82        76.47        64.73 
TCGA-CV-6936 TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7101 
        5.46        11.24        15.06        30.05         4.14         5.23 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7416 
       21.76        71.21        56.68        47.97        36.13        25.02 
TCGA-CV-7424 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6827 TCGA-DQ-5625 
       14.86        16.60         7.76        10.68         4.18        34.78 
TCGA-DQ-5629 TCGA-HD-7753 TCGA-IQ-7631 
       16.96         0.16         4.01 

$`7Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        4.37        18.31         6.31        13.55        10.19         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 
       13.05         9.17         9.50         5.69        12.39         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
       13.58         9.01         6.81         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         6.18         1.38 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        10.42         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        32.35         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       33.07        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 
       47.28        19.20        17.95        87.55        84.39        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        2.14         9.70        20.52         4.70        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 
      126.08        19.79        12.03        42.35         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 
        9.01         1.84        52.31        12.89        10.75       114.94 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 
       95.34         4.96        11.87         2.10        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        22.85        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
        0.07        34.09       100.54        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
        6.38        21.99        10.39        10.55        27.22        13.25 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-DQ-5624 
        8.22         7.82         2.53         5.00         5.03        37.78 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 
       15.68        18.02        14.04        11.84         9.83         1.15 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7632 
        0.99         0.07         0.82         5.26         3.72 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.16              0.07 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           135.29            210.94 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            16.60             13.55 
[1] "0.2 - 135.3 (16.6)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D14V2, continuous
D14V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      8   31
  7Q GAIN WILD-TYPE   73  174
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE               8                73
  MALE                31               174
D14V4, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1               2                17
  T2               8                71
  T3              12                64
  T4              17                85
D14V5, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0              18                94
  N1               4                40
  N2              15                90
  N3               0                 4
D14V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     39    0
  7Q GAIN WILD-TYPE  243    3
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0              39               243
  M1               0                 3
D14V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     12   27
  7Q GAIN WILD-TYPE   64  183
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO               12                64
  YES              27               183
D14V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      7   32
  7Q GAIN WILD-TYPE   40  207
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO                7                40
  YES              32               207

Clustering(15) Variable = 8p gain mutation analysis
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    39  15
  8P GAIN WILD-TYPE 126 104
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               54               230 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               15               104 
$`8P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6871 
        9.30         8.15         6.12         7.96        57.44         2.07 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 TCGA-CN-4723 TCGA-CN-4729 TCGA-CN-4731 
       95.05         4.60        18.31        13.55         5.46        12.59 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5355 TCGA-CN-5359 TCGA-CN-6012 TCGA-CN-6024 
       11.44        26.63         9.17        12.39         4.70         7.36 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6998 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-7068 
        3.91         3.68         1.51        27.65        29.46        22.78 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6493 TCGA-CR-7370 
       58.42        50.01        11.34        11.64         9.27         3.42 
TCGA-CR-7389 TCGA-CV-5430 TCGA-CV-5435 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 
       12.89       135.29        47.28        89.82        76.47        64.73 
TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6940 
       33.11        40.96        13.32         2.14        20.52        26.43 
TCGA-CV-6948 TCGA-CV-7090 TCGA-CV-7235 TCGA-CV-7245 TCGA-CV-7253 TCGA-CV-7407 
       42.35       126.12        56.68        26.20        11.87        35.54 
TCGA-CV-7415 TCGA-CV-7428 TCGA-CV-7440 TCGA-CX-7086 TCGA-DQ-5625 TCGA-DQ-7588 
       22.85        54.90        21.99         7.76        34.78        14.04 

$`8P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.16        13.64        16.08         9.07         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
       57.90         5.88        53.75         5.00         8.02        14.79 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 
       12.99         3.72         7.76         6.12         9.04         4.37 
TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 
        6.31        10.19         4.67         6.38        10.68        11.28 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4741 
       17.16        12.13        12.99         7.89        14.33        28.77 
TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
       13.05         9.50         5.69        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         7.50         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6996 TCGA-CN-6997 TCGA-CQ-5323 
        1.38         5.82         2.73         3.75         3.29        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 
       39.68        21.50         2.93        38.89        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CR-5243 
       13.25         4.21        14.96        26.76        33.07        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6471 TCGA-CR-6472 
       11.77        54.64        37.87        26.24        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 
        7.66        12.46        11.51        15.75        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.90        35.84         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 
        5.92        35.41        29.92        48.36        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5966 
      108.33        19.20        17.95        87.55        84.39        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 
       13.35        17.75        57.07        48.59         7.07        43.23 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 
       24.43         5.88        90.08         9.70         5.46         4.70 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6950 
       21.86        11.24       126.08        19.79        12.03        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 
        8.38        28.31         2.50         4.14        64.80       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        36.00        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7410 
        4.96        47.97         2.10        36.13        18.41       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 
       34.09       100.54        14.86        56.48       156.49         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
        6.38        10.39        10.55        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7591 TCGA-DQ-7592 
       37.78        16.96        15.68        18.02        11.84         9.83 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 
        1.15         0.99         0.07         0.16         0.82         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             1.51              0.07 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           135.29            210.94 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           16.175            13.610 
[1] "1.5 - 135.3 (16.2)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D15V2, continuous
D15V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     15   40
  8P GAIN WILD-TYPE   66  165
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              15                66
  MALE                40               165
D15V4, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1               1                18
  T2              21                58
  T3              11                65
  T4              21                81
D15V5, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0              19                93
  N1              11                33
  N2              22                83
  N3               0                 4
D15V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     54    1
  8P GAIN WILD-TYPE  228    2
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0              54               228
  M1               1                 2
D15V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     12   43
  8P GAIN WILD-TYPE   64  167
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO               12                64
  YES              43               167
D15V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      9   46
  8P GAIN WILD-TYPE   38  193
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                9                38
  YES              46               193

Clustering(16) Variable = 8q gain mutation analysis
D16V1, survival
                   sevent
clus2                0  1
  8Q GAIN MUTATED   74 48
  8Q GAIN WILD-TYPE 91 71
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              122               162 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               48                71 
$`8Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 
        9.30        16.08         8.15         6.12         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4223 
       57.44         5.00         2.07        12.99         3.72        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4723 TCGA-CN-4729 
        9.04         4.60         4.37        18.31        13.55         5.46 
TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5355 TCGA-CN-5359 
       12.59         7.89        11.44        26.63         9.17        12.39 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6012 
        8.28        16.21        11.84         8.52        13.58         4.70 
TCGA-CN-6013 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 
        5.06         7.36         1.38         5.82         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5334 
        3.75         3.29         1.51        27.65        29.46         4.21 
TCGA-CQ-6218 TCGA-CQ-6224 TCGA-CQ-6228 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 
       28.60        32.35        14.96        33.07        22.78        84.23 
TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6482 
       11.77        58.42        50.01        39.52        36.99        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7369 TCGA-CR-7370 
       11.64         7.66         9.27        39.12        35.84         3.42 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7399 TCGA-CR-7401 TCGA-CV-5430 TCGA-CV-5432 
       12.89        29.82         5.92        35.41       135.29       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5444 
       47.28        19.20        89.82        87.55        76.47        64.73 
TCGA-CV-5970 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6934 
       13.35        48.59        33.11        40.96        13.32         2.14 
TCGA-CV-6937 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6948 
       20.52        26.43        11.24       126.08        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7095 
       15.06        30.05         6.08         4.14       126.12        18.81 
TCGA-CV-7099 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7235 TCGA-CV-7238 
        7.99         1.84        12.89        71.21        56.68        47.47 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7254 TCGA-CV-7407 TCGA-CV-7414 
       26.20        18.97        17.10        47.97        35.54         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7434 
       22.85        25.02         0.07       156.49        54.90         7.13 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6823 
       16.60         6.38        21.99         7.76        27.22         7.82 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7592 TCGA-F7-7848 
       37.78        34.78        18.02        14.04         9.83         1.15 
TCGA-HD-7229 TCGA-IQ-7630 
        0.07         5.26 

$`8Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       15.16        13.64         9.07         6.25        27.78        57.90 
TCGA-BA-5556 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-7269 TCGA-BB-4217 TCGA-CN-4722 
        5.88         8.02        14.79         7.76         6.12         6.31 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4733 
       10.19         4.67         6.38        10.68        11.28        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 
       12.13        12.99        14.33        28.77        13.05         9.50 
TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5374 
        5.69        28.47        11.54        11.57        12.49         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        6.81         7.50         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6992 TCGA-CQ-5323 
        3.19         9.07         6.61         6.18         2.73        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 
       39.68        21.50         2.93        38.89        33.80        10.42 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 
       32.35        32.88        34.75        13.25         4.21        26.76 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 
       54.64        37.87        26.24        34.52        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
        6.02        11.90        10.22        12.46        11.51        15.75 
TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.18        47.34        40.90         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7391 TCGA-CR-7392 
       17.13        32.78        47.01        27.02        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7402 
       29.85        29.52        30.54         7.10         5.13        29.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5439 TCGA-CV-5443 TCGA-CV-5966 
       48.36        17.16       108.33        17.95        84.39        17.06 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6436 TCGA-CV-6441 
       17.75        57.07         7.07        43.23        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6943 
       90.08         9.70         5.46         4.70        21.86        19.79 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7100 TCGA-CV-7101 
        2.50        64.80       111.12        12.66         9.01         5.23 
TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7242 
       52.31        21.76        10.75       114.94         4.73        36.00 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        11.87         2.10        36.13        18.41 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 
      210.94        89.33         9.67        25.94        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
       14.86        56.48         3.48        16.27        84.49        19.73 
TCGA-CV-7435 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
      142.49        10.39        10.55        13.25        10.68         8.22 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5629 TCGA-DQ-5630 
        2.53         5.00         5.03         4.18        16.96        15.68 
TCGA-DQ-7591 TCGA-H7-7774 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7631 TCGA-IQ-7632 
       11.84         0.99         0.16         0.82         4.01         3.72 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.07              0.16 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           156.49            210.94 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           13.810            13.985 
[1] "0.1 - 156.5 (13.8)" "0.2 - 210.9 (14.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
D16V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     34   90
  8Q GAIN WILD-TYPE   47  115
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              34                47
  MALE                90               115
D16V4, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1               6                13
  T2              33                46
  T3              33                43
  T4              49                53
D16V5, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0              39                73
  N1              19                25
  N2              56                49
  N3               2                 2
D16V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED    123    1
  8Q GAIN WILD-TYPE  159    2
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0             123               159
  M1               1                 2
D16V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     31   93
  8Q GAIN WILD-TYPE   45  117
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO               31                45
  YES              93               117
D16V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     23  101
  8Q GAIN WILD-TYPE   24  138
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO               23                24
  YES             101               138

Clustering(17) Variable = 9p gain mutation analysis
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    25  20
  9P GAIN WILD-TYPE 140  99
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               45               239 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               20                99 
$`9P GAIN MUTATED`
TCGA-BA-5556 TCGA-BA-5559 TCGA-CN-4727 TCGA-CN-5355 TCGA-CN-5370 TCGA-CN-6010 
        5.88        57.44         6.38         9.17         8.52         6.81 
TCGA-CN-6011 TCGA-CN-6018 TCGA-CN-6023 TCGA-CN-6996 TCGA-CQ-5329 TCGA-CQ-7068 
        7.50         1.48         6.18         3.75        27.65        22.78 
TCGA-CR-6467 TCGA-CR-6478 TCGA-CR-6487 TCGA-CR-6493 TCGA-CR-7373 TCGA-CR-7395 
       58.42         6.02         7.66         9.27        29.23        30.54 
TCGA-CR-7402 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 
       29.92        17.16        17.95        89.82        76.47        64.73 
TCGA-CV-5966 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6939 TCGA-CV-6940 
       17.06        33.11        13.32        24.43        21.86        26.43 
TCGA-CV-6952 TCGA-CV-6956 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7099 TCGA-CV-7247 
        6.08         7.13         4.14        64.80         7.99        18.97 
TCGA-CV-7254 TCGA-CV-7407 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7434 
       47.97        35.54        56.48       156.49         3.48         7.13 
TCGA-D6-6516 TCGA-DQ-5625 TCGA-H7-7774 
       10.68        34.78         0.99 

$`9P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78        57.90         6.12         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 
       18.31         6.31        13.55        10.19         4.67        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 
       11.54        11.84        11.57        12.49        13.58         9.01 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 
        4.70         5.06         6.61         5.23         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        9.07         6.61         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.91         3.68         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        38.89        29.46        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CR-5243 
       13.25         4.21        14.96        26.76        33.07        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 
       11.77        54.64        37.87        26.24        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6480 TCGA-CR-6481 
       34.52        36.99        18.51        16.90        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 
       11.34        11.64        12.46        11.51        15.75        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       24.95         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7397 
       29.82        30.02        31.10        29.85        29.52         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5432 
        5.13         5.92        35.41        48.36       135.29       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5970 
      108.33        47.28        19.20        87.55        84.39        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.75        57.07        48.59         7.07        43.23        40.96 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
        4.70        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 
       15.06        30.05        53.92        65.82        10.98         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
       28.31         2.50       126.12       111.12        18.81        12.66 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       36.00        26.20        17.10        95.34         4.96        11.87 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
        2.10        36.13        18.41       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      100.54        14.86        54.90        16.27        84.49        19.73 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
        7.76        27.22        13.25         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 
        5.00         5.03         4.18        37.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-HD-7229 
       18.02        14.04        11.84         9.83         1.15         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.16         0.82         5.26         4.01         3.72 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.99              0.07 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           156.49            210.94 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            17.16             13.58 
[1] "1.0 - 156.5 (17.2)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D17V2, continuous
D17V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     17   28
  9P GAIN WILD-TYPE   64  177
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE              17                64
  MALE                28               177
D17V4, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1               2                17
  T2              13                66
  T3              11                65
  T4              17                85
D17V5, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0              18                94
  N1              12                32
  N2              10                95
  N3               0                 4
D17V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     45    0
  9P GAIN WILD-TYPE  237    3
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0              45               237
  M1               0                 3
D17V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     10   35
  9P GAIN WILD-TYPE   66  175
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO               10                66
  YES              35               175
D17V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      6   39
  9P GAIN WILD-TYPE   41  200
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                6                41
  YES              39               200

Clustering(18) Variable = 9q gain mutation analysis
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    33  18
  9Q GAIN WILD-TYPE 132 101
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               51               233 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               18               101 
$`9Q GAIN MUTATED`
TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5556 TCGA-BA-5559 TCGA-BB-4224 TCGA-CN-4727 
       16.08         8.15         5.88        57.44         9.04         6.38 
TCGA-CN-4731 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6018 
       12.59        28.77         9.17         6.81         7.50         1.48 
TCGA-CN-6023 TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-5329 TCGA-CQ-7068 TCGA-CR-6467 
        6.18         3.75        48.16        27.65        22.78        58.42 
TCGA-CR-6491 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7373 TCGA-CR-7402 TCGA-CV-5434 
       11.51        39.12        40.90        29.23        29.92       108.33 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5977 
       17.95        89.82        76.47        64.73        17.06        33.11 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6939 TCGA-CV-6952 TCGA-CV-7089 TCGA-CV-7099 
       13.32        24.43        21.86         6.08        64.80         7.99 
TCGA-CV-7100 TCGA-CV-7177 TCGA-CV-7235 TCGA-CV-7247 TCGA-CV-7407 TCGA-CV-7415 
        9.01        21.76        56.68        18.97        35.54        22.85 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7434 TCGA-D6-6516 
       56.48       156.49         3.48        16.27         7.13        10.68 
TCGA-DQ-5625 TCGA-H7-7774 TCGA-HD-7229 
       34.78         0.99         0.07 

$`9Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        13.64         9.07         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
       57.90         6.12         7.96        53.75         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
       14.79         2.07        12.99         3.72         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 
       95.05         4.60         4.37        18.31         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 
       10.19         4.67        10.68         5.46        11.28        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
       13.05         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
       13.58         9.01         4.70         5.06         6.61         5.23 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 TCGA-CN-6998 
        5.82         2.73         3.91         3.68         3.29         1.51 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50         2.93        38.89        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       32.35        13.25         4.21        14.96        26.76        33.07 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 
       15.75         9.27        47.18        47.34        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
        3.06        24.95         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 
       30.54         7.10         5.13         5.92        35.41        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 
      135.29        17.16       129.21        47.28        19.20        87.55 
TCGA-CV-5443 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       84.39        13.35        17.75        57.07        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       43.23        40.96         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
        5.46        20.52         4.70        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 
       19.79        12.03        42.35        15.06        30.05        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7101 
        4.14       126.12       111.12        18.81        12.66         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
        1.84        52.31        12.89        71.21        10.75       114.94 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        36.00        26.20        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7432 
        0.07        34.09       100.54        14.86        54.90        84.49 
TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
       19.73       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.55         7.76        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5629 
        2.53         5.00         5.03         4.18        37.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 
       15.68        18.02        14.04        11.84         9.83         1.15 
TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.16         0.82         5.26         4.01         3.72 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.07              0.07 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           156.49            210.94 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
            18.97             13.25 
[1] "0.1 - 156.5 (19.0)" "0.1 - 210.9 (13.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D18V2, continuous
D18V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     17   35
  9Q GAIN WILD-TYPE   64  170
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE              17                64
  MALE                35               170
D18V4, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1               1                18
  T2              13                66
  T3              11                65
  T4              26                76
D18V5, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0              24                88
  N1               9                35
  N2              16                89
  N3               0                 4
D18V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     52    0
  9Q GAIN WILD-TYPE  230    3
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0              52               230
  M1               0                 3
D18V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     14   38
  9Q GAIN WILD-TYPE   62  172
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO               14                62
  YES              38               172
D18V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      9   43
  9Q GAIN WILD-TYPE   38  196
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                9                38
  YES              43               196

Clustering(19) Variable = 10p gain mutation analysis
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    10   3
  10P GAIN WILD-TYPE 155 116
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                13                271 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 3                116 
$`10P GAIN MUTATED`
TCGA-BA-5151 TCGA-BA-6869 TCGA-CN-4727 TCGA-CN-5356 TCGA-CN-6013 TCGA-CR-5247 
        6.25         8.02         6.38         9.50         5.06        11.77 
TCGA-CR-6488 TCGA-CR-7399 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7421 TCGA-F7-7848 
       12.46         5.92        95.34        47.97         0.07         1.15 
TCGA-HD-7753 
        0.16 

$`10P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         5.00        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 
       18.31         6.31        13.55        10.19         4.67        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.17         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         7.50         4.70         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       84.23        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6491 
       11.90        10.22        11.34        11.64         7.66        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 
       56.68         4.73        47.47        36.00        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
       17.10         4.96        11.87         2.10        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02        25.94        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 
       34.78        16.96        15.68        18.02        14.04        11.84 
TCGA-DQ-7592 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 
        9.83         0.99         0.07         0.82         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.07               0.07 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             95.34             210.94 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              6.38              14.96 
[1] "0.1 - 95.3 (6.4)"   "0.1 - 210.9 (15.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D19V2, continuous
D19V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      2   11
  10P GAIN WILD-TYPE   79  194
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE                2                 79
  MALE                 11                194
D19V4, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1                1                 18
  T2                2                 77
  T3                6                 70
  T4                4                 98
D19V5, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0                9                103
  N1                2                 42
  N2                2                103
  N3                0                  4
D19V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED     13    0
  10P GAIN WILD-TYPE  269    3
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0               13                269
  M1                0                  3
D19V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      4    9
  10P GAIN WILD-TYPE   72  201
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 4                 72
  YES                9                201
D19V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      2   11
  10P GAIN WILD-TYPE   45  228
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 2                 45
  YES               11                228

Clustering(20) Variable = 10q gain mutation analysis
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED     4   1
  10Q GAIN WILD-TYPE 161 118
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 5                279 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                118 
$`10Q GAIN MUTATED`
TCGA-BA-5151 TCGA-CN-6013 TCGA-CR-7399 TCGA-CV-6441 TCGA-HD-7753 
        6.25         5.06         5.92         5.88         0.16 

$`10Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        4.37        18.31         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        4.70         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        10.42         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       26.76        33.07        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.13        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 
       11.84         9.83         1.15         0.99         0.07         0.82 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              0.16               0.07 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              6.25             210.94 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              5.88              14.79 
[1] "0.2 - 6.2 (5.9)"    "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "3.3"
D20V2, continuous
D20V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1    4
  10Q GAIN WILD-TYPE   80  201
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                1                 80
  MALE                  4                201
D20V4, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                1                 18
  T2                0                 79
  T3                2                 74
  T4                2                100
D20V5, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0                3                109
  N1                0                 44
  N2                2                103
  N3                0                  4
D20V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      5    0
  10Q GAIN WILD-TYPE  277    3
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0                5                277
  M1                0                  3
D20V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      2    3
  10Q GAIN WILD-TYPE   74  207
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 2                 74
  YES                3                207
D20V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1    4
  10Q GAIN WILD-TYPE   46  235
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 1                 46
  YES                4                235

Clustering(21) Variable = 11p gain mutation analysis
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    13   4
  11P GAIN WILD-TYPE 152 115
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                17                267 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                115 
$`11P GAIN MUTATED`
TCGA-BB-4225 TCGA-CN-4737 TCGA-CQ-5329 TCGA-CQ-5334 TCGA-CQ-7065 TCGA-CR-7370 
        4.60         7.89        27.65         4.21        33.07         3.42 
TCGA-CR-7382 TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6951 TCGA-CV-7254 TCGA-CV-7261 
       26.17        89.82        40.96        30.05        47.97        36.13 
TCGA-CV-7432 TCGA-D6-6516 TCGA-D6-6827 TCGA-HD-7229 TCGA-IQ-7630 
       84.49        10.68         4.18         0.07         5.26 

$`11P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        4.37        18.31         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.13        12.99        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 
       48.16        39.68        21.50         2.93        38.89        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       33.80        10.42        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7068 
       32.35        13.25         4.21        14.96        26.76        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.90        35.84         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7383 
        0.99        31.96         9.17        34.06        19.92        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 
      129.21       108.33        47.28        19.20        17.95        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 
       57.07        48.59        33.11         7.07        43.23        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        42.35        15.06         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
        4.96        11.87         2.10        18.41        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
       54.90         3.48        16.27        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       27.22        13.25         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        5.03        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7753 
       14.04        11.84         9.83         1.15         0.99         0.16 
TCGA-HD-7754 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         4.01         3.72 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.07               0.07 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             89.82             210.94 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             26.17              13.64 
[1] "0.1 - 89.8 (26.2)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D21V2, continuous
D21V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      4   13
  11P GAIN WILD-TYPE   77  192
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE                4                 77
  MALE                 13                192
D21V4, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1                1                 18
  T2               10                 69
  T3                2                 74
  T4                4                 98
D21V5, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0               10                102
  N1                1                 43
  N2                6                 99
  N3                0                  4
D21V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     17    0
  11P GAIN WILD-TYPE  265    3
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0               17                265
  M1                0                  3
D21V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      4   13
  11P GAIN WILD-TYPE   72  197
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 4                 72
  YES               13                197
D21V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      1   16
  11P GAIN WILD-TYPE   46  223
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 1                 46
  YES               16                223

Clustering(22) Variable = 11q gain mutation analysis
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    14   6
  11Q GAIN WILD-TYPE 151 113
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                20                264 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 6                113 
$`11Q GAIN MUTATED`
TCGA-BA-5558 TCGA-BB-4225 TCGA-CN-4731 TCGA-CN-4737 TCGA-CQ-5329 TCGA-CQ-5334 
       53.75         4.60        12.59         7.89        27.65         4.21 
TCGA-CQ-7065 TCGA-CR-7382 TCGA-CV-5976 TCGA-CV-6951 TCGA-CV-6960 TCGA-CV-7261 
       33.07        26.17        48.59        30.05        28.31        36.13 
TCGA-CV-7416 TCGA-CV-7432 TCGA-D6-6516 TCGA-D6-6827 TCGA-DQ-5631 TCGA-HD-7229 
       25.02        84.49        10.68         4.18        18.02         0.07 
TCGA-IQ-7630 TCGA-IQ-7631 
        5.26         4.01 

$`11Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       18.31         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       10.68         5.46        11.28        17.16        12.13        12.99 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        38.89        29.46        33.80        10.42 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
        4.21        14.96        26.76        22.78        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7383 TCGA-CR-7385 
       31.96         9.17        34.06        19.92        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       57.07        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        42.35        15.06         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 
       65.82        10.98         7.13         8.38         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
       11.87        47.97         2.10        18.41        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
        3.48        16.27        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25         8.22         7.82         2.53         5.00         5.03 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7591 
       37.78        34.78        16.96        15.68        14.04        11.84 
TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7632 
        9.83         1.15         0.99         0.16         0.82         3.72 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.07               0.07 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             84.49             210.94 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             21.52              13.61 
[1] "0.1 - 84.5 (21.5)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D22V2, continuous
D22V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      5   15
  11Q GAIN WILD-TYPE   76  190
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE                5                 76
  MALE                 15                190
D22V4, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1                1                 18
  T2                8                 71
  T3                4                 72
  T4                7                 95
D22V5, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0               11                101
  N1                1                 43
  N2                8                 97
  N3                0                  4
D22V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     20    0
  11Q GAIN WILD-TYPE  262    3
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0               20                262
  M1                0                  3
D22V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      5   15
  11Q GAIN WILD-TYPE   71  195
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 5                 71
  YES               15                195
D22V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      1   19
  11Q GAIN WILD-TYPE   46  220
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 1                 46
  YES               19                220

Clustering(23) Variable = 12p gain mutation analysis
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED    39  21
  12P GAIN WILD-TYPE 126  98
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                60                224 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                21                 98 
$`12P GAIN MUTATED`
TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-CN-4725 
       57.44         2.07        95.05         9.04         4.60        10.19 
TCGA-CN-4727 TCGA-CN-4729 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-5359 TCGA-CN-6013 
        6.38         5.46         7.89        14.33        12.39         5.06 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6994 TCGA-CQ-5329 TCGA-CQ-5332 TCGA-CR-5243 
        7.36         1.38         3.91        27.65        10.42        84.23 
TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-7364 TCGA-CR-7390 
       11.77        58.42         7.66        12.46        47.18        29.82 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 
        5.13         5.92        17.16       129.21       108.33        89.82 
TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6962 
       33.11        40.96        90.08        11.24        12.03         4.14 
TCGA-CV-7091 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7245 
      111.12         1.84        52.31        21.76        71.21        26.20 
TCGA-CV-7247 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7418 TCGA-CV-7430 
       18.97        47.97        36.13        35.54        25.94        16.27 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7086 TCGA-D6-6516 
        7.13       142.49        16.60        21.99         7.76        10.68 
TCGA-DQ-5629 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7753 TCGA-HD-7754 
       16.96         9.83         1.15         0.99         0.16         0.82 

$`12P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75         5.00         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 
        7.76         6.12         4.37        18.31         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
        4.67        10.68        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       12.99        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        9.50         5.69        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         7.50         4.70         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 
        4.41         3.19         9.07         6.61         6.18         5.82 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        2.73         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50         2.93        38.89        29.46        33.80 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 
       11.34        11.64        11.51        15.75         9.27        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5435 TCGA-CV-5436 
       35.41        29.92        48.36       135.29        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       17.95        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 
       13.35        17.75        57.07        48.59         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       13.32        24.43         5.88         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        26.43       126.08        19.79 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       12.89        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       36.00        17.10        95.34         4.96        11.87         2.10 
TCGA-CV-7263 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       18.41       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7438 
      156.49        54.90         3.48        84.49        19.73         6.38 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.39        10.55        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-HD-7229 TCGA-IQ-7630 
       15.68        18.02        14.04        11.84         0.07         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.16               0.07 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            142.49             210.94 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            13.395             13.840 
[1] "0.2 - 142.5 (13.4)" "0.1 - 210.9 (13.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D23V2, continuous
D23V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     12   49
  12P GAIN WILD-TYPE   69  156
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               12                 69
  MALE                 49                156
D23V4, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1                4                 15
  T2               18                 61
  T3               18                 58
  T4               21                 81
D23V5, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0               23                 89
  N1               10                 34
  N2               24                 81
  N3                0                  4
D23V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     60    1
  12P GAIN WILD-TYPE  222    2
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0               60                222
  M1                1                  2
D23V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     12   49
  12P GAIN WILD-TYPE   64  161
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                12                 64
  YES               49                161
D23V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      7   54
  12P GAIN WILD-TYPE   40  185
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 7                 40
  YES               54                185

Clustering(24) Variable = 12q gain mutation analysis
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    18   9
  12Q GAIN WILD-TYPE 147 110
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                27                257 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 9                110 
$`12Q GAIN MUTATED`
TCGA-BA-5559 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4225 TCGA-CN-4725 TCGA-CN-4727 
       57.44         2.07        95.05         4.60        10.19         6.38 
TCGA-CN-4737 TCGA-CN-5359 TCGA-CN-6988 TCGA-CQ-5329 TCGA-CQ-5332 TCGA-CR-5247 
        7.89        12.39         1.38        27.65        10.42        11.77 
TCGA-CR-6467 TCGA-CR-7399 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-6941 TCGA-CV-6962 
       58.42         5.92        17.16       108.33        11.24         4.14 
TCGA-CV-7102 TCGA-CV-7245 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-D6-6516 
        1.84        26.20       142.49        16.60        21.99        10.68 
TCGA-H7-7774 TCGA-HD-7753 TCGA-HD-7754 
        0.99         0.16         0.82 

$`12Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75         5.00         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 
        7.76         6.12         9.04         4.37        18.31         6.31 
TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
       13.55         4.67        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       17.16        12.13        12.99        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5360 
       28.77        13.05         9.17         9.50         5.69        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 
        9.07         6.61         6.18         7.36         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50         2.93        38.89        29.46        33.80 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 
       84.23        54.64        37.87        26.24        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5435 
       35.41        29.92        48.36       135.29       129.21        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        26.43       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        5.23        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 
      114.94        56.68         4.73        47.47        36.00        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7438 TCGA-CX-7082 
       16.27        84.49        19.73         7.13         6.38        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.55         7.76        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        15.68        18.02        14.04        11.84         9.83 
TCGA-F7-7848 TCGA-HD-7229 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        1.15         0.07         5.26         4.01         3.72 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.16               0.07 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            142.49             210.94 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             10.68              14.86 
[1] "0.2 - 142.5 (10.7)" "0.1 - 210.9 (14.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D24V2, continuous
D24V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      5   22
  12Q GAIN WILD-TYPE   76  183
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE                5                 76
  MALE                 22                183
D24V4, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1                2                 17
  T2                8                 71
  T3               10                 66
  T4                7                 95
D24V5, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0                9                103
  N1                3                 41
  N2               12                 93
  N3                0                  4
D24V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     26    1
  12Q GAIN WILD-TYPE  256    2
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0               26                256
  M1                1                  2
D24V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      7   20
  12Q GAIN WILD-TYPE   69  190
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 7                 69
  YES               20                190
D24V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      4   23
  12Q GAIN WILD-TYPE   43  216
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 4                 43
  YES               23                216

Clustering(25) Variable = 13q gain mutation analysis
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED    11   7
  13Q GAIN WILD-TYPE 154 112
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                18                266 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 7                112 
$`13Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BB-4225 TCGA-CN-4729 TCGA-CN-4737 TCGA-CN-4742 TCGA-CN-6013 
        9.30         4.60         5.46         7.89        13.05         5.06 
TCGA-CR-5247 TCGA-CR-7367 TCGA-CR-7372 TCGA-CR-7390 TCGA-CV-5440 TCGA-CV-6003 
       11.77        47.34        24.95        29.82        89.82        40.96 
TCGA-CV-6933 TCGA-CV-7095 TCGA-CV-7178 TCGA-CV-7416 TCGA-CV-7437 TCGA-DQ-5629 
       90.08        18.81        71.21        25.02        16.60        16.96 

$`13Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        16.08         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         9.04         4.37 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       18.31         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       10.68        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-5355 TCGA-CN-5356 
       14.33        11.44        26.63        28.77         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         7.50         4.70         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 
       38.89        27.65        29.46        33.80        10.42         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 
        4.21        14.96        26.76        33.07        22.78        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        47.18        39.12        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.42         3.06        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 
        7.07        43.23        13.32        24.43         5.88         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
      111.12        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       18.41        35.54       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       22.85        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
       19.73         7.13       142.49         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 
       34.78        15.68        18.02        14.04        11.84         9.83 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 
        1.15         0.99         0.07         0.16         0.82         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              4.60               0.07 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             90.08             210.94 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            17.885             13.565 
[1] "4.6 - 90.1 (17.9)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
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        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D25V2, continuous
D25V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      5   14
  13Q GAIN WILD-TYPE   76  191
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                5                 76
  MALE                 14                191
D25V4, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                1                 18
  T2                4                 75
  T3                4                 72
  T4               10                 92
D25V5, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0                5                107
  N1                5                 39
  N2                8                 97
  N3                0                  4
D25V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED     19    0
  13Q GAIN WILD-TYPE  263    3
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0               19                263
  M1                0                  3
D25V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      6   13
  13Q GAIN WILD-TYPE   70  197
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 6                 70
  YES               13                197
D25V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      4   15
  13Q GAIN WILD-TYPE   43  224
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 4                 43
  YES               15                224

Clustering(26) Variable = 14q gain mutation analysis
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    25  21
  14Q GAIN WILD-TYPE 140  98
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                46                238 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                21                 98 
$`14Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-5555 TCGA-BA-6872 TCGA-BA-6873 TCGA-CN-5363 TCGA-CN-5366 
        9.30         6.12        12.99         3.72         8.28        11.84 
TCGA-CN-5367 TCGA-CN-6021 TCGA-CN-6994 TCGA-CQ-5329 TCGA-CQ-5334 TCGA-CR-6477 
       11.57         9.07         3.91        27.65         4.21        16.90 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7380 TCGA-CR-7383 
       12.46        11.51        47.34         3.42        19.92        17.13 
TCGA-CR-7390 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-5973 TCGA-CV-5977 
       29.82       129.21       108.33        89.82        57.07        33.11 
TCGA-CV-6003 TCGA-CV-6934 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6950 TCGA-CV-7090 
       40.96         2.14        26.43       126.08        15.06       126.12 
TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7178 TCGA-CV-7245 TCGA-CV-7413 TCGA-CV-7415 
       18.81         5.23        71.21        26.20         9.67        22.85 
TCGA-CV-7416 TCGA-CV-7434 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6823 
       25.02         7.13        16.60         7.76        10.68         7.82 
TCGA-D6-6825 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-HD-7753 
        5.00        34.78        16.96         0.16 

$`14Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        16.08         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78        57.90         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-7269 TCGA-BB-4217 
        5.00         8.02        14.79         2.07         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 
       95.05         9.04         4.60         4.37        18.31         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 
        9.50         5.69        12.39        28.47        16.21        11.54 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        3.19         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        2.73         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 
       39.68        21.50         2.93        38.89        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
       10.42        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6478 
       50.01        39.52        34.52        36.99        18.51         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6492 
       11.90        10.22        11.34        11.64         7.66        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 
        9.27        47.18        39.12        40.90        35.84         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7382 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 
       26.17        32.78        47.01        27.02        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 
       64.73        17.06        13.35        17.75        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6935 
       43.23        13.32        24.43         5.88        90.08         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 
        5.46        20.52         4.70        21.86        11.24        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       12.03        42.35        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
       64.80       111.12        12.66         7.99         9.01         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        36.00        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 
       35.54       210.94        89.33         0.46        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7438 
        3.48        16.27        84.49        19.73       142.49         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       21.99        10.39        10.55        27.22        13.25         8.22 
TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5630 TCGA-DQ-5631 
        2.53         5.03         4.18        37.78        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 
       14.04        11.84         9.83         1.15         0.99         0.07 
TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         5.26         4.01         3.72 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.16               0.07 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            129.21             210.94 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             15.83              13.61 
[1] "0.2 - 129.2 (15.8)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D26V2, continuous
D26V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     17   29
  14Q GAIN WILD-TYPE   64  176
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE               17                 64
  MALE                 29                176
D26V4, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1                4                 15
  T2               11                 68
  T3               10                 66
  T4               18                 84
D26V5, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0               20                 92
  N1                7                 37
  N2               15                 90
  N3                1                  3
D26V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     46    0
  14Q GAIN WILD-TYPE  236    3
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0               46                236
  M1                0                  3
D26V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      9   37
  14Q GAIN WILD-TYPE   67  173
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 9                 67
  YES               37                173
D26V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      5   41
  14Q GAIN WILD-TYPE   42  198
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 5                 42
  YES               41                198

Clustering(27) Variable = 15q gain mutation analysis
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED     6   5
  15Q GAIN WILD-TYPE 159 114
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                11                273 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 5                114 
$`15Q GAIN MUTATED`
TCGA-CN-4729 TCGA-CN-4737 TCGA-CQ-6228 TCGA-CR-6477 TCGA-CR-7364 TCGA-CV-7178 
        5.46         7.89        14.96        16.90        47.18        71.21 
TCGA-CV-7235 TCGA-CV-7254 TCGA-CV-7413 TCGA-CV-7418 TCGA-D6-6516 
       56.68        47.97         9.67        25.94        10.68 

$`15Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
        4.60         4.37        18.31         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67         6.38        10.68        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.13        12.99        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        10.42         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 
       32.88        34.75        32.35        13.25         4.21        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       18.51         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 
        7.66        12.46        11.51        15.75         9.27        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 
       10.75       114.94         4.73        47.47        36.00        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       18.97        17.10        95.34         4.96        11.87         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 
       36.13        18.41        35.54       210.94        89.33         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       22.85        25.02         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       10.39        10.55         7.76        27.22        13.25         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 
       34.78        16.96        15.68        18.02        14.04        11.84 
TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        9.83         1.15         0.99         0.07         0.16         0.82 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              5.46               0.07 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             71.21             210.94 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             16.90              13.58 
[1] "5.5 - 71.2 (16.9)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D27V2, continuous
D27V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      4    7
  15Q GAIN WILD-TYPE   77  198
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE                4                 77
  MALE                  7                198
D27V4, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1                2                 17
  T2                4                 75
  T3                1                 75
  T4                2                100
D27V5, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0                5                107
  N1                1                 43
  N2                4                101
  N3                0                  4
D27V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     11    0
  15Q GAIN WILD-TYPE  271    3
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0               11                271
  M1                0                  3
D27V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      1   10
  15Q GAIN WILD-TYPE   75  200
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 1                 75
  YES               10                200
D27V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      1   10
  15Q GAIN WILD-TYPE   46  229
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 1                 46
  YES               10                229

Clustering(28) Variable = 16p gain mutation analysis
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    11   5
  16P GAIN WILD-TYPE 154 114
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                16                268 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 5                114 
$`16P GAIN MUTATED`
TCGA-BA-6869 TCGA-BB-4224 TCGA-CN-4737 TCGA-CN-6013 TCGA-CQ-5329 TCGA-CR-6472 
        8.02         9.04         7.89         5.06        27.65        34.52 
TCGA-CR-7390 TCGA-CV-5978 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7255 TCGA-CV-7423 
       29.82         7.07        26.20        18.97         2.10       100.54 
TCGA-CV-7433 TCGA-CX-7086 TCGA-DQ-5625 TCGA-IQ-7631 
       19.73         7.76        34.78         4.01 

$`16P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75        57.44         5.00        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         4.60         4.37 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       18.31         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6016 
       13.58         9.01         6.81         7.50         4.70         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        38.89        29.46        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 
       17.75        57.07        48.59        33.11        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7248 TCGA-CV-7250 
       56.68         4.73        47.47        36.00        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
        4.96        11.87        47.97        36.13        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.94         0.07        34.09        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7434 TCGA-CV-7435 
       54.90         3.48        16.27        84.49         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 
       16.60         6.38        21.99        10.39        10.55        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        5.03         4.18        37.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 
       14.04        11.84         9.83         1.15         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7632 
        0.16         0.82         5.26         3.72 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              2.10               0.07 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            100.54             210.94 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            14.005             13.840 
[1] "2.1 - 100.5 (14.0)" "0.1 - 210.9 (13.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D28V2, continuous
D28V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      5   11
  16P GAIN WILD-TYPE   76  194
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE                5                 76
  MALE                 11                194
D28V4, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1                0                 19
  T2                6                 73
  T3                4                 72
  T4                5                 97
D28V5, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0                8                104
  N1                1                 43
  N2                4                101
  N3                1                  3
D28V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     16    0
  16P GAIN WILD-TYPE  266    3
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0               16                266
  M1                0                  3
D28V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      3   13
  16P GAIN WILD-TYPE   73  197
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 3                 73
  YES               13                197
D28V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      2   14
  16P GAIN WILD-TYPE   45  225
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 2                 45
  YES               14                225

Clustering(29) Variable = 16q gain mutation analysis
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    10  10
  16Q GAIN WILD-TYPE 155 109
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                20                264 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                10                109 
$`16Q GAIN MUTATED`
TCGA-BB-4224 TCGA-CN-4737 TCGA-CN-6013 TCGA-CN-6989 TCGA-CQ-5329 TCGA-CR-7390 
        9.04         7.89         5.06         5.82        27.65        29.82 
TCGA-CV-5436 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-7099 TCGA-CV-7177 
       19.20        33.11         7.07        43.23         7.99        21.76 
TCGA-CV-7178 TCGA-CV-7245 TCGA-CV-7415 TCGA-CV-7423 TCGA-CV-7433 TCGA-DQ-5631 
       71.21        26.20        22.85       100.54        19.73        18.02 
TCGA-DQ-7588 TCGA-IQ-7631 
       14.04         4.01 

$`16Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 
       12.99         3.72         7.76         6.12        95.05         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        4.37        18.31         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.13        12.99        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 
        6.61         6.18         7.36         1.38         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        38.89        29.46        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 
       17.16       129.21       108.33        47.28        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       17.75        57.07        48.59        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 
        9.01         5.23         1.84        52.31        12.89        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 
      114.94        56.68         4.73        47.47        36.00        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 
        0.46        25.02        25.94         0.07        34.09        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 
       34.78        16.96        15.68        11.84         9.83         1.15 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7632 
        0.99         0.07         0.16         0.82         5.26         3.72 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              4.01               0.07 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            100.54             210.94 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            19.465             13.450 
[1] "4.0 - 100.5 (19.5)" "0.1 - 210.9 (13.4)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D29V2, continuous
D29V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      6   14
  16Q GAIN WILD-TYPE   75  191
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE                6                 75
  MALE                 14                191
D29V4, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1                0                 19
  T2                9                 70
  T3                4                 72
  T4                7                 95
D29V5, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0                6                106
  N1                3                 41
  N2                9                 96
  N3                1                  3
D29V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     20    0
  16Q GAIN WILD-TYPE  262    3
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0               20                262
  M1                0                  3
D29V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      5   15
  16Q GAIN WILD-TYPE   71  195
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 5                 71
  YES               15                195
D29V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      3   17
  16Q GAIN WILD-TYPE   44  222
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 3                 44
  YES               17                222

Clustering(30) Variable = 17p gain mutation analysis
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED    10   8
  17P GAIN WILD-TYPE 155 111
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                18                266 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 8                111 
$`17P GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-6872 TCGA-BA-7269 TCGA-CN-6023 TCGA-CQ-5329 TCGA-CQ-6229 
        9.30        12.99         7.76         6.18        27.65        26.76 
TCGA-CR-5247 TCGA-CR-6467 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5440 TCGA-CV-5977 
       11.77        58.42       135.29       129.21        89.82        33.11 
TCGA-CV-6941 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6962 TCGA-CV-7095 TCGA-CV-7414 
       11.24        15.06        30.05         4.14        18.81         0.46 

$`17P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        16.08         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6873 
       57.44         5.00         8.02        14.79         2.07         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.61         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
       21.50         2.93        38.89        29.46        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 
       13.25         4.21        14.96        33.07        22.78        84.23 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 
       35.41        29.92        48.36        17.16       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       17.06        13.35        17.75        57.07        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 
       26.43       126.08        19.79        12.03        42.35         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 
        2.50        64.80       126.12       111.12        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         9.67        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        15.68        18.02        14.04        11.84         9.83 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 
        1.15         0.99         0.07         0.16         0.82         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.46               0.07 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            135.29             210.94 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            16.935             13.610 
[1] "0.5 - 135.3 (16.9)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D30V2, continuous
D30V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      2   16
  17P GAIN WILD-TYPE   79  189
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE                2                 79
  MALE                 16                189
D30V4, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1                0                 19
  T2                5                 74
  T3                7                 69
  T4                6                 96
D30V5, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0                6                106
  N1                4                 40
  N2                7                 98
  N3                0                  4
D30V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     18    0
  17P GAIN WILD-TYPE  264    3
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0               18                264
  M1                0                  3
D30V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      6   12
  17P GAIN WILD-TYPE   70  198
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 6                 70
  YES               12                198
D30V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      2   16
  17P GAIN WILD-TYPE   45  223
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 2                 45
  YES               16                223

Clustering(31) Variable = 17q gain mutation analysis
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    12  10
  17Q GAIN WILD-TYPE 153 109
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                22                262 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                10                109 
$`17Q GAIN MUTATED`
TCGA-BA-7269 TCGA-CN-6023 TCGA-CN-6988 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6473 
        7.76         6.18         1.38        11.77        58.42        36.99 
TCGA-CR-7390 TCGA-CR-7399 TCGA-CV-5430 TCGA-CV-5440 TCGA-CV-5977 TCGA-CV-6941 
       29.82         5.92       135.29        89.82        33.11        11.24 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6962 TCGA-CV-7095 TCGA-CV-7102 
       15.06        30.05         6.08         4.14        18.81         1.84 
TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7424 TCGA-D6-6516 
       95.34        11.87        14.86        10.68 

$`17Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
       12.99         3.72         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        4.37        18.31         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 
        3.19         9.07         6.61         7.36         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       33.80        10.42         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       33.07        22.78        84.23        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        34.52        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       40.90        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 
       17.13        32.78        47.01        27.02        12.89        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       35.41        29.92        48.36        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       21.86        26.43       126.08        19.79        12.03        42.35 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 
        2.50        64.80       126.12       111.12        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        9.01         5.23        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 
       26.20        18.97        17.10         4.96        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
      100.54        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 
       11.84         9.83         1.15         0.99         0.07         0.16 
TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         5.26         4.01         3.72 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              1.38               0.07 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            135.29             210.94 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            13.365             13.840 
[1] "1.4 - 135.3 (13.4)" "0.1 - 210.9 (13.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D31V2, continuous
D31V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      4   19
  17Q GAIN WILD-TYPE   77  186
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE                4                 77
  MALE                 19                186
D31V4, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1                1                 18
  T2                3                 76
  T3               10                 66
  T4                8                 94
D31V5, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0                8                104
  N1                4                 40
  N2                9                 96
  N3                0                  4
D31V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     23    0
  17Q GAIN WILD-TYPE  259    3
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0               23                259
  M1                0                  3
D31V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      5   18
  17Q GAIN WILD-TYPE   71  192
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 5                 71
  YES               18                192
D31V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      1   22
  17Q GAIN WILD-TYPE   46  217
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 1                 46
  YES               22                217

Clustering(32) Variable = 18p gain mutation analysis
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    21  24
  18P GAIN WILD-TYPE 144  95
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                45                239 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                24                 95 
$`18P GAIN MUTATED`
TCGA-BA-4076 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6873 TCGA-BB-4223 TCGA-BB-4225 
       13.64        57.44         8.02         3.72        95.05         4.60 
TCGA-BB-4228 TCGA-CN-4725 TCGA-CN-5366 TCGA-CN-6024 TCGA-CN-6988 TCGA-CQ-5332 
       18.31        10.19        11.84         7.36         1.38        10.42 
TCGA-CQ-6227 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6482 TCGA-CR-6493 TCGA-CR-7364 
        4.21        11.77        58.42        11.34         9.27        47.18 
TCGA-CR-7370 TCGA-CR-7390 TCGA-CR-7402 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5439 
        3.42        29.82        29.92       129.21       108.33        17.95 
TCGA-CV-5441 TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6935 
       87.55        57.07        33.11        13.32         5.88         9.70 
TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-7101 TCGA-CV-7102 
       11.24        12.03        15.06        30.05         5.23         1.84 
TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7422 TCGA-CV-7434 TCGA-CV-7437 
       18.97        11.87         2.10        34.09         7.13        16.60 
TCGA-CV-7440 TCGA-DQ-5631 TCGA-DQ-7588 
       21.99        18.02        14.04 

$`18P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        16.08         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4217 
        5.00        14.79         2.07        12.99         7.76         6.12 
TCGA-BB-4224 TCGA-BB-4227 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 
        9.04         4.37         6.31        13.55         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
        8.28        16.21        11.54        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        6.61         6.18         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5334 
        2.93        38.89        27.65        29.46        33.80         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 
       14.96        26.76        33.07        22.78        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       37.87        26.24        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 
       18.51        16.90         6.02        11.90        10.22        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7365 TCGA-CR-7367 
        7.66        12.46        11.51        15.75        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 
       35.41        48.36       135.29        17.16        47.28        19.20 
TCGA-CV-5440 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       89.82        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 
       17.75        48.59         7.07        43.23        40.96        24.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
       90.08         2.14         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 
       26.43       126.08        19.79        42.35         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        7.99         9.01        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7261 
       26.20        17.10        95.34         4.96        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       18.41        35.54       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7424 
       22.85        25.02        25.94         0.07       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       19.73       142.49         6.38        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.00         5.03         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 
       15.68        11.84         9.83         1.15         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.16         0.82         5.26         4.01         3.72 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              1.38               0.07 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            129.21             210.94 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             13.32              14.79 
[1] "1.4 - 129.2 (13.3)" "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D32V2, continuous
D32V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      5   41
  18P GAIN WILD-TYPE   76  164
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE                5                 76
  MALE                 41                164
D32V4, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1                0                 19
  T2               11                 68
  T3               22                 54
  T4               12                 90
D32V5, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0               16                 96
  N1                9                 35
  N2               18                 87
  N3                0                  4
D32V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     46    0
  18P GAIN WILD-TYPE  236    3
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0               46                236
  M1                0                  3
D32V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      8   38
  18P GAIN WILD-TYPE   68  172
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 8                 68
  YES               38                172
D32V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      2   44
  18P GAIN WILD-TYPE   45  195
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 2                 45
  YES               44                195

Clustering(33) Variable = 18q gain mutation analysis
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    13   4
  18Q GAIN WILD-TYPE 152 115
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                17                267 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 4                115 
$`18Q GAIN MUTATED`
TCGA-BA-4076 TCGA-BA-5559 TCGA-BA-6869 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4228 
       13.64        57.44         8.02        95.05         4.60        18.31 
TCGA-CN-6024 TCGA-CR-6467 TCGA-CR-6482 TCGA-CR-7367 TCGA-CR-7370 TCGA-CR-7398 
        7.36        58.42        11.34        47.34         3.42         5.13 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-6433 TCGA-CV-6950 TCGA-CV-6951 
      129.21       108.33        13.32        15.06        30.05 

$`18Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        16.08         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        5.00        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
        6.12         9.04         4.37         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         6.18         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        29.46        33.80        10.42         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       14.96        26.76        33.07        22.78        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
       47.18        39.12        40.90        35.84         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
       17.16        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       19.79        12.03        42.35         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 
       34.78        16.96        15.68        18.02        14.04        11.84 
TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        9.83         1.15         0.99         0.07         0.16         0.82 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              3.42               0.07 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            129.21             210.94 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             15.06              13.58 
[1] "3.4 - 129.2 (15.1)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
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        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "2.5"
D33V2, continuous
D33V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      2   15
  18Q GAIN WILD-TYPE   79  190
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE                2                 79
  MALE                 15                190
D33V4, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1                0                 19
  T2                7                 72
  T3                6                 70
  T4                3                 99
D33V5, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0                6                106
  N1                2                 42
  N2                8                 97
  N3                0                  4
D33V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED     17    0
  18Q GAIN WILD-TYPE  265    3
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0               17                265
  M1                0                  3
D33V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      5   12
  18Q GAIN WILD-TYPE   71  198
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 5                 71
  YES               12                198
D33V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      1   16
  18Q GAIN WILD-TYPE   46  223
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 1                 46
  YES               16                223

Clustering(34) Variable = 19p gain mutation analysis
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    10   2
  19P GAIN WILD-TYPE 155 117
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                12                272 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 2                117 
$`19P GAIN MUTATED`
TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4225 TCGA-CN-6016 TCGA-CN-6021 TCGA-CQ-5323 
       57.44        95.05         4.60         6.61         9.07        48.16 
TCGA-CQ-5324 TCGA-CR-6467 TCGA-CV-5442 TCGA-CV-7261 TCGA-CV-7407 TCGA-IQ-7631 
       39.68        58.42        76.47        36.13        35.54         4.01 

$`19P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        3.72         7.76         6.12         9.04         4.37        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 
        5.23         1.48         4.41         3.19         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        3.75         3.29         1.51        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        29.46        33.80        10.42         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       14.96        26.76        33.07        22.78        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       54.64        37.87        26.24        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
        4.73        47.47        36.00        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 
       95.34         4.96        11.87        47.97         2.10        18.41 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 
       34.78        16.96        15.68        18.02        14.04        11.84 
TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        9.83         1.15         0.99         0.07         0.16         0.82 
TCGA-IQ-7630 TCGA-IQ-7632 
        5.26         3.72 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              4.01               0.07 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             95.05             210.94 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            37.905             13.565 
[1] "4.0 - 95.0 (37.9)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
[1] "hr=" "3.8"
D34V2, continuous
D34V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      4    8
  19P GAIN WILD-TYPE   77  197
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                4                 77
  MALE                  8                197
D34V4, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1                0                 19
  T2                5                 74
  T3                3                 73
  T4                3                 99
D34V5, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0                4                108
  N1                3                 41
  N2                3                102
  N3                0                  4
D34V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED     12    0
  19P GAIN WILD-TYPE  270    3
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0               12                270
  M1                0                  3
D34V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      4    8
  19P GAIN WILD-TYPE   72  202
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 4                 72
  YES                8                202
D34V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      2   10
  19P GAIN WILD-TYPE   45  229
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 2                 45
  YES               10                229

Clustering(35) Variable = 19q gain mutation analysis
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    11   6
  19Q GAIN WILD-TYPE 154 113
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                17                267 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 6                113 
$`19Q GAIN MUTATED`
TCGA-BA-5559 TCGA-BB-4223 TCGA-BB-4225 TCGA-CN-6021 TCGA-CQ-5324 TCGA-CR-6467 
       57.44        95.05         4.60         9.07        39.68        58.42 
TCGA-CR-7367 TCGA-CR-7389 TCGA-CV-5434 TCGA-CV-5442 TCGA-CV-6937 TCGA-CV-7253 
       47.34        12.89       108.33        76.47        20.52        11.87 
TCGA-CV-7407 TCGA-CV-7435 TCGA-CV-7437 TCGA-DQ-7592 TCGA-IQ-7631 
       35.54       142.49        16.60         9.83         4.01 

$`19Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       53.75         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        3.72         7.76         6.12         9.04         4.37        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 
        6.61         5.23         1.48         4.41         3.19         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5325 
        3.68         3.75         3.29         1.51        48.16        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       84.23        11.77        54.64        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7368 
       11.51        15.75         9.27        47.18        39.12        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 
       47.28        19.20        17.95        89.82        87.55        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6938 
        5.88        90.08         2.14         9.70         5.46         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7410 TCGA-CV-7411 
       47.97         2.10        36.13        18.41       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7438 
        3.48        16.27        84.49        19.73         7.13         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 
       14.04        11.84         1.15         0.99         0.07         0.16 
TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7632 
        0.82         5.26         3.72 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              4.01               0.07 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            142.49             210.94 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             35.54              13.55 
[1] "4.0 - 142.5 (35.5)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D35V2, continuous
D35V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      5   12
  19Q GAIN WILD-TYPE   76  193
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE                5                 76
  MALE                 12                193
D35V4, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1                0                 19
  T2                7                 72
  T3                4                 72
  T4                5                 97
D35V5, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0                4                108
  N1                4                 40
  N2                6                 99
  N3                0                  4
D35V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     17    0
  19Q GAIN WILD-TYPE  265    3
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0               17                265
  M1                0                  3
D35V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      5   12
  19Q GAIN WILD-TYPE   71  198
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 5                 71
  YES               12                198
D35V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      2   15
  19Q GAIN WILD-TYPE   45  224
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 2                 45
  YES               15                224

Clustering(36) Variable = 20p gain mutation analysis
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    38  18
  20P GAIN WILD-TYPE 127 101
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                56                228 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                18                101 
$`20P GAIN MUTATED`
TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-6868 TCGA-BB-4224 TCGA-BB-4225 TCGA-CN-4725 
        9.07         8.15         5.00         9.04         4.60        10.19 
TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5360 TCGA-CN-5374 
       12.59         7.89        28.77        13.05        28.47         9.01 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        4.70         5.06         6.18         7.36         1.38         5.82 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CR-5243 TCGA-CR-5247 
       27.65        29.46        32.35        32.35        84.23        11.77 
TCGA-CR-6467 TCGA-CR-6473 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7370 TCGA-CV-5430 
       58.42        36.99        39.12        47.34         3.42       135.29 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5973 
      108.33        47.28        19.20        76.47        64.73        57.07 
TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6936 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6954 
       33.11        40.96         5.46        12.03        42.35        65.82 
TCGA-CV-6956 TCGA-CV-6962 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7245 TCGA-CV-7255 
        7.13         4.14        21.76        71.21        26.20         2.10 
TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 TCGA-D6-6517 
       25.02       100.54        16.60         7.76        10.68         8.22 
TCGA-DQ-5624 TCGA-IQ-7630 
       37.78         5.26 

$`20P GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        13.64        16.08         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 
        6.12        95.05         4.37        18.31         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 
        4.67         6.38        10.68         5.46        11.28        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5355 
       12.13        12.99        14.33        11.44        26.63         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        9.50         5.69        12.39         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 
       11.84        11.57        12.49         8.52        13.58         6.81 
TCGA-CN-6011 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        7.50         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        9.07         6.61         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 
       38.89        33.80        10.42         4.21        28.60        32.88 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       34.75        13.25         4.21        14.96        26.76        33.07 
TCGA-CQ-7068 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 
       22.78        54.64        37.87        26.24        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       34.52        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 
        9.27        47.18        40.90        35.84         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 
       17.16       129.21        17.95        89.82        87.55        84.39 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 
       17.06        13.35        17.75        48.59         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 
       19.79        15.06        30.05         6.08        53.92        10.98 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        8.38        28.31         2.50        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       52.31        12.89        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       47.47        36.00        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
       11.87        47.97        36.13        18.41        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 
       16.27        84.49        19.73         7.13       142.49         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6823 
       21.99        10.39        10.55        27.22        13.25         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 
        2.53         5.00         5.03         4.18        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 
       15.68        18.02        14.04        11.84         9.83         1.15 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.07         0.16         0.82         4.01         3.72 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              1.38               0.07 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            135.29             210.94 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             17.90              13.61 
[1] "1.4 - 135.3 (17.9)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D36V2, continuous
D36V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     15   41
  20P GAIN WILD-TYPE   66  164
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               15                 66
  MALE                 41                164
D36V4, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1                1                 18
  T2               14                 65
  T3               17                 59
  T4               23                 79
D36V5, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0               14                 98
  N1               11                 33
  N2               26                 79
  N3                1                  3
D36V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     56    0
  20P GAIN WILD-TYPE  226    3
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0               56                226
  M1                0                  3
D36V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     21   35
  20P GAIN WILD-TYPE   55  175
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                21                 55
  YES               35                175
D36V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     16   40
  20P GAIN WILD-TYPE   31  199
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                16                 31
  YES               40                199

Clustering(37) Variable = 20q gain mutation analysis
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED    36  22
  20Q GAIN WILD-TYPE 129  97
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                58                226 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                22                 97 
$`20Q GAIN MUTATED`
TCGA-BA-4075 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-6868 TCGA-BB-4225 TCGA-CN-4725 
        9.30         9.07         8.15         5.00         4.60        10.19 
TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5374 TCGA-CN-6011 
       12.59         7.89        28.77        13.05         9.01         7.50 
TCGA-CN-6013 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CQ-5329 TCGA-CQ-5330 
        5.06         1.38         5.82         3.91        27.65        29.46 
TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-6467 TCGA-CR-6473 
       32.35        32.35        84.23        11.77        58.42        36.99 
TCGA-CR-6474 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CV-5430 TCGA-CV-5432 
       18.51        47.18        39.12        47.34       135.29       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5973 
      108.33        47.28        19.20        76.47        64.73        57.07 
TCGA-CV-5977 TCGA-CV-6003 TCGA-CV-6936 TCGA-CV-6945 TCGA-CV-6951 TCGA-CV-6954 
       33.11        40.96         5.46        12.03        30.05        65.82 
TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-7097 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7245 
        7.13        28.31        12.66        21.76        71.21        26.20 
TCGA-CV-7255 TCGA-CV-7416 TCGA-CV-7423 TCGA-CV-7437 TCGA-CX-7086 TCGA-D6-6516 
        2.10        25.02       100.54        16.60         7.76        10.68 
TCGA-D6-6823 TCGA-DQ-5624 TCGA-DQ-5631 TCGA-IQ-7630 
        7.82        37.78        18.02         5.26 

$`20Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
       15.16        13.64        16.08         6.25        27.78        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
        6.12         5.88         7.96        53.75        57.44         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
       14.79         2.07        12.99         3.72         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 
       95.05         9.04         4.37        18.31         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 
        4.67         6.38        10.68         5.46        11.28        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-5355 
       12.13        12.99        14.33        11.44        26.63         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        6.81         4.70         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6992 
        3.19         9.07         6.61         6.18         7.36         2.73 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
        3.68         3.75         3.29         1.51        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 
       21.50         2.93        38.89        33.80        10.42         4.21 
TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       28.60        32.88        34.75        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       26.76        33.07        22.78        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       50.01        39.52        34.52        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       15.75         9.27        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 
       48.36        17.16        17.95        89.82        87.55        84.39 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5978 TCGA-CV-5979 
       17.06        13.35        17.75        48.59         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 
       19.79        42.35        15.06         6.08        53.92        10.98 
TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        8.38         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       18.81         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       12.89        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       36.00        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
       47.97        36.13        18.41        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.94         0.07        34.09 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13       142.49         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 
       10.39        10.55        27.22        13.25         8.22         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.00         5.03         4.18        34.78        16.96        15.68 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 
       14.04        11.84         9.83         1.15         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7631 TCGA-IQ-7632 
        0.16         0.82         4.01         3.72 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              1.38               0.07 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            135.29             210.94 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            20.480             13.335 
[1] "1.4 - 135.3 (20.5)" "0.1 - 210.9 (13.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
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"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D37V2, continuous
D37V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     13   45
  20Q GAIN WILD-TYPE   68  160
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               13                 68
  MALE                 45                160
D37V4, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1                1                 18
  T2               15                 64
  T3               18                 58
  T4               23                 79
D37V5, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0               19                 93
  N1               11                 33
  N2               24                 81
  N3                1                  3
D37V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     58    0
  20Q GAIN WILD-TYPE  224    3
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0               58                224
  M1                0                  3
D37V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     22   36
  20Q GAIN WILD-TYPE   54  174
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                22                 54
  YES               36                174
D37V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     14   44
  20Q GAIN WILD-TYPE   33  195
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                14                 33
  YES               44                195

Clustering(38) Variable = 21q gain mutation analysis
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED     6   3
  21Q GAIN WILD-TYPE 159 116
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 9                275 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 3                116 
$`21Q GAIN MUTATED`
TCGA-BB-4225 TCGA-CN-4727 TCGA-CN-6024 TCGA-CR-6467 TCGA-CR-6478 TCGA-CR-7370 
        4.60         6.38         7.36        58.42         6.02         3.42 
TCGA-CV-5432 TCGA-CV-7414 TCGA-CV-7415 
      129.21         0.46        22.85 

$`21Q GAIN WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        4.37        18.31         6.31        13.55        10.19         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        9.07         6.61         6.18         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       33.80        10.42         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       26.24        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
       16.90        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.90        35.84         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       17.16       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      111.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 
      114.94        56.68         4.73        47.47        36.00        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
        2.10        36.13        18.41        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        9.67        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 
       14.04        11.84         9.83         1.15         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.16         0.82         5.26         4.01         3.72 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.46               0.07 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            129.21             210.94 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              6.38              14.33 
[1] "0.5 - 129.2 (6.4)"  "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D38V2, continuous
D38V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      2    7
  21Q GAIN WILD-TYPE   79  198
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE                2                 79
  MALE                  7                198
D38V4, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                0                 19
  T2                2                 77
  T3                2                 74
  T4                4                 98
D38V5, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0                3                109
  N1                1                 43
  N2                4                101
  N3                0                  4
D38V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      9    0
  21Q GAIN WILD-TYPE  273    3
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0                9                273
  M1                0                  3
D38V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      2    7
  21Q GAIN WILD-TYPE   74  203
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 2                 74
  YES                7                203
D38V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      1    8
  21Q GAIN WILD-TYPE   46  231
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 1                 46
  YES                8                231

Clustering(39) Variable = 22q gain mutation analysis
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED    16  16
  22Q GAIN WILD-TYPE 149 103
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                32                252 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                16                103 
$`22Q GAIN MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5557 TCGA-BA-7269 TCGA-CN-6012 
       15.16         9.07         6.12         7.96         7.76         4.70 
TCGA-CN-6024 TCGA-CN-6994 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CR-6471 
        7.36         3.91         2.93        10.42        32.88        39.52 
TCGA-CR-6474 TCGA-CR-6482 TCGA-CR-7370 TCGA-CR-7390 TCGA-CR-7397 TCGA-CR-7401 
       18.51        11.34         3.42        29.82         7.10        35.41 
TCGA-CV-5434 TCGA-CV-5978 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-7090 TCGA-CV-7102 
      108.33         7.07        26.43        11.24       126.12         1.84 
TCGA-CV-7178 TCGA-CV-7245 TCGA-CV-7254 TCGA-CV-7407 TCGA-CV-7424 TCGA-CV-7437 
       71.21        26.20        47.97        35.54        14.86        16.60 
TCGA-DQ-5625 TCGA-DQ-5629 
       34.78        16.96 

$`22Q GAIN WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        16.08         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 
       57.90         5.88        53.75        57.44         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
       14.79         2.07        12.99         3.72         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 
        9.04         4.60         4.37        18.31         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         7.50         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         6.18         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        5.82         2.73         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       48.16        39.68        21.50        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 
       33.80         4.21        28.60        32.35        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       50.01        34.52        36.99        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.06        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       27.02        12.89        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
       30.54         5.13         5.92        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       17.16       129.21        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 
       17.75        57.07        48.59        33.11        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 
        5.46        20.52         4.70        21.86       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        4.14        64.80       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 
        9.01         5.23        52.31        12.89        21.76        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 
      114.94        56.68         4.73        47.47        36.00        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7261 
       17.10        95.34         4.96        11.87         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       18.41       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 
       25.02        25.94         0.07        34.09       100.54        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
        7.13       142.49         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5630 
        2.53         5.00         5.03         4.18        37.78        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 
       18.02        14.04        11.84         9.83         1.15         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.07         0.16         0.82         5.26         4.01         3.72 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              1.84               0.07 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            126.12             210.94 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             15.01              13.61 
[1] "1.8 - 126.1 (15.0)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D39V2, continuous
D39V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      8   25
  22Q GAIN WILD-TYPE   73  180
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE                8                 73
  MALE                 25                180
D39V4, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1                2                 17
  T2               11                 68
  T3               10                 66
  T4                9                 93
D39V5, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0               10                102
  N1                4                 40
  N2               14                 91
  N3                1                  3
D39V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     33    0
  22Q GAIN WILD-TYPE  249    3
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0               33                249
  M1                0                  3
D39V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      8   25
  22Q GAIN WILD-TYPE   68  185
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 8                 68
  YES               25                185
D39V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      4   29
  22Q GAIN WILD-TYPE   43  210
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 4                 43
  YES               29                210

Clustering(40) Variable = 1p loss mutation analysis
D40V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    14  10
  1P LOSS WILD-TYPE 151 109
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               24               260 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               10               109 
$`1P LOSS MUTATED`
TCGA-BA-6871 TCGA-CN-4737 TCGA-CN-5360 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6992 
        2.07         7.89        28.47         9.07         7.36         2.73 
TCGA-CN-6997 TCGA-CQ-6225 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7374 TCGA-CR-7399 
        3.29        13.25         3.42         3.06         0.99         5.92 
TCGA-CV-5430 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-6935 TCGA-CV-6948 TCGA-CV-6962 
      135.29       108.33        89.82         9.70        42.35         4.14 
TCGA-CV-7245 TCGA-CV-7261 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7424 TCGA-D6-6516 
       26.20        36.13         0.46        25.94        14.86        10.68 

$`1P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         5.00         8.02        14.79        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        4.37        18.31         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.13        12.99        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 
       13.05         9.17         9.50         5.69        12.39         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 
        6.61         5.23         1.48         4.41         3.19         6.61 
TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        6.18         1.38         5.82         3.91         3.68         3.75 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        29.46        33.80        10.42         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        32.88        34.75        32.35         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       26.76        33.07        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 
        7.10         5.13        35.41        29.92        48.36        17.16 
TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 
      129.21        47.28        19.20        17.95        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 
       24.43         5.88        90.08         2.14         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       12.03        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         2.50        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
        2.10        18.41        35.54       210.94        89.33         9.67 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 
       22.85        25.02         0.07        34.09       100.54        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 
       10.55         7.76        27.22        13.25         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        15.68        18.02        14.04        11.84         9.83 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 
        1.15         0.99         0.07         0.16         0.82         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.46              0.07 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           135.29            210.94 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            9.385            14.875 
[1] "0.5 - 135.3 (9.4)"  "0.1 - 210.9 (14.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D40V2, continuous
D40V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      6   18
  1P LOSS WILD-TYPE   75  187
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE               6                75
  MALE                18               187
D40V4, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1               1                18
  T2               3                76
  T3               9                67
  T4              10                92
D40V5, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0               7               105
  N1               1                43
  N2              14                91
  N3               0                 4
D40V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     23    1
  1P LOSS WILD-TYPE  259    2
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0              23               259
  M1               1                 2
D40V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      7   17
  1P LOSS WILD-TYPE   69  193
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                7                69
  YES              17               193
D40V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      4   20
  1P LOSS WILD-TYPE   43  219
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                4                43
  YES              20               219

Clustering(41) Variable = 1q loss mutation analysis
D41V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED     4   3
  1Q LOSS WILD-TYPE 161 116
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                7               277 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                3               116 
$`1Q LOSS MUTATED`
TCGA-CN-6024 TCGA-CN-6992 TCGA-CQ-6225 TCGA-CR-7371 TCGA-CR-7374 TCGA-CV-7261 
        7.36         2.73        13.25         3.06         0.99        36.13 
TCGA-CV-7424 
       14.86 

$`1Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
        4.60         4.37        18.31         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6988 
        4.41         3.19         9.07         6.61         6.18         1.38 
TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        5.82         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        10.42         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        32.35         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
       11.87        47.97         2.10        18.41        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
        0.07        34.09       100.54        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.00         5.03         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 
       15.68        18.02        14.04        11.84         9.83         1.15 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         0.07         0.16         0.82         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.99              0.07 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            36.13            210.94 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             7.36             14.33 
[1] "1.0 - 36.1 (7.4)"   "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "2.1"
D41V2, continuous
D41V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      2    5
  1Q LOSS WILD-TYPE   79  200
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE               2                79
  MALE                 5               200
D41V4, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T1               0                19
  T2               1                78
  T3               4                72
  T4               2               100
D41V5, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  N0               3               109
  N1               1                43
  N2               3               102
  N3               0                 4
D41V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      7    0
  1Q LOSS WILD-TYPE  275    3
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  M0               7               275
  M1               0                 3
D41V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      1    6
  1Q LOSS WILD-TYPE   75  204
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                1                75
  YES               6               204
D41V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      1    6
  1Q LOSS WILD-TYPE   46  233
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                1                46
  YES               6               233

Clustering(42) Variable = 2p loss mutation analysis
D42V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED     3   2
  2P LOSS WILD-TYPE 162 117
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5               279 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                2               117 
$`2P LOSS MUTATED`
TCGA-BA-4076 TCGA-CN-6011 TCGA-CQ-6218 TCGA-CR-6472 TCGA-CV-7432 
       13.64         7.50        28.60        34.52        84.49 

$`2P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        16.08         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        4.37        18.31         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 
       12.49         8.52        13.58         9.01         6.81         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6221 
       29.46        33.80        10.42         4.21        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
        7.99         9.01         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 
       56.48       156.49        54.90         3.48        16.27        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 
       34.78        16.96        15.68        18.02        14.04        11.84 
TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
        9.83         1.15         0.99         0.07         0.16         0.82 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             7.50              0.07 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            84.49            210.94 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            28.60             13.58 
[1] "7.5 - 84.5 (28.6)"  "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D42V2, continuous
D42V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      1    4
  2P LOSS WILD-TYPE   80  201
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               1                80
  MALE                 4               201
D42V4, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1               0                19
  T2               1                78
  T3               2                74
  T4               1               101
D42V5, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  N0               2               110
  N1               0                44
  N2               2               103
  N3               0                 4
D42V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      5    0
  2P LOSS WILD-TYPE  277    3
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  M0               5               277
  M1               0                 3
D42V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      2    3
  2P LOSS WILD-TYPE   74  207
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                2                74
  YES               3               207
D42V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      2    3
  2P LOSS WILD-TYPE   45  236
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                2                45
  YES               3               236

Clustering(43) Variable = 2q loss mutation analysis
D43V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED     6   2
  2Q LOSS WILD-TYPE 159 117
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                8               276 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                2               117 
$`2Q LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-5152 TCGA-BA-6871 TCGA-CR-6472 TCGA-CR-7371 TCGA-CR-7399 
       13.64        27.78         2.07        34.52         3.06         5.92 
TCGA-CR-7402 TCGA-CV-5973 
       29.92        57.07 

$`2Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        16.08         9.07         8.15         6.25 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        5.00         8.02        14.79        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 
        9.17         9.50         5.69        12.39        28.47         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       33.80        10.42         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 
       39.12        47.34        40.90        35.84         3.42        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        7.10         5.13        35.41        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       17.75        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
       13.32        24.43         5.88        90.08         2.14         9.70 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
        5.46        20.52         4.70        21.86        26.43        11.24 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
      126.08        19.79        12.03        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
       28.31         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 
       56.68         4.73        47.47        36.00        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
        0.46        22.85        25.02        25.94         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 
       18.02        14.04        11.84         9.83         1.15         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.07         0.16         0.82         5.26         4.01         3.72 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             2.07              0.07 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            57.07            210.94 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            20.71             13.81 
[1] "2.1 - 57.1 (20.7)"  "0.1 - 210.9 (13.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D43V2, continuous
D43V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      3    5
  2Q LOSS WILD-TYPE   78  200
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE               3                78
  MALE                 5               200
D43V4, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T1               0                19
  T2               0                79
  T3               5                71
  T4               2               100
D43V5, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  N0               2               110
  N1               2                42
  N2               3               102
  N3               0                 4
D43V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      7    1
  2Q LOSS WILD-TYPE  275    2
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  M0               7               275
  M1               1                 2
D43V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      1    7
  2Q LOSS WILD-TYPE   75  203
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                1                75
  YES               7               203
D43V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      0    8
  2Q LOSS WILD-TYPE   47  231
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                0                47
  YES               8               231

Clustering(44) Variable = 3p loss mutation analysis
D44V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED    56  58
  3P LOSS WILD-TYPE 109  61
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              114               170 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               58                61 
$`3P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5149 TCGA-BA-5558 TCGA-BA-6869 TCGA-BA-6870 
       15.16        13.64         8.15        53.75         8.02        14.79 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4224 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4735 
       12.99         7.76         9.04        10.19         4.67        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-5355 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
       12.99         7.89         9.17        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6024 TCGA-CN-6988 
       11.54        11.57        13.58         7.50         7.36         1.38 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5326 TCGA-CQ-5330 
        2.73         3.91         3.29         1.51         2.93        29.46 
TCGA-CQ-5332 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-7065 TCGA-CR-5243 TCGA-CR-5247 
       10.42        28.60        32.35        33.07        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5250 TCGA-CR-6480 TCGA-CR-6482 TCGA-CR-6491 TCGA-CR-6493 
       54.64        26.24        11.90        11.34        11.51         9.27 
TCGA-CR-7364 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7380 TCGA-CR-7390 
       47.18        35.84         3.42         3.06        19.92        29.82 
TCGA-CR-7398 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
        5.13        29.92       135.29       129.21       108.33        47.28 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5970 TCGA-CV-5976 TCGA-CV-5979 TCGA-CV-6441 
       17.95        89.82        13.35        48.59        43.23         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6940 TCGA-CV-6941 
       90.08         2.14         9.70         5.46        26.43        11.24 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 
       12.03        42.35         6.08        65.82         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7099 
       28.31         2.50         4.14       126.12        18.81         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7242 
        9.01         1.84        12.89        21.76        10.75        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7261 TCGA-CV-7263 
       26.20        18.97         4.96        11.87        36.13        18.41 
TCGA-CV-7413 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 
        9.67        25.94         0.07       100.54        14.86        54.90 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7435 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6516 
       16.27        84.49       142.49         7.76        27.22        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6825 TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7588 
        8.22         7.82         5.00        16.96        18.02        14.04 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-HD-7229 TCGA-HD-7753 TCGA-IQ-7630 
       11.84         9.83         1.15         0.07         0.16         5.26 

$`3P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        16.08         9.07         6.25        27.78        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6871 
        6.12         5.88         7.96        57.44         5.00         2.07 
TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        3.72         6.12        95.05         4.60         4.37        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
        6.31        13.55         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.59        17.16        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5366 TCGA-CN-5369 
       13.05         9.50         5.69        12.39        11.84        12.49 
TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        8.52         9.01         6.81         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6995 TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-5324 
        6.18         5.82         3.68         3.75        48.16        39.68 
TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6221 
       21.50        38.89        27.65        33.80         4.21        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7068 TCGA-CR-5249 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       22.78        37.87        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6481 TCGA-CR-6484 
       36.99        18.51        16.90         6.02        10.22        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
        7.66        12.46        15.75        39.12        47.34        40.90 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5436 TCGA-CV-5441 
        5.92        35.41        48.36        17.16        19.20        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 
       76.47        84.39        64.73        17.06        17.75        57.07 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6937 
       33.11         7.07        40.96        13.32        24.43        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 
        4.70        21.86       126.08        19.79        15.06        30.05 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7101 
       53.92        10.98        64.80       111.12        12.66         5.23 
TCGA-CV-7103 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       52.31        71.21       114.94        56.68         4.73        47.47 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7407 TCGA-CV-7410 
       17.10        95.34        47.97         2.10        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7425 
       89.33         0.46        22.85        25.02        34.09        56.48 
TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 
      156.49         3.48        19.73         7.13        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6824 TCGA-D6-6826 
       21.99        10.39        10.55        13.25         2.53         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-H7-7774 TCGA-HD-7754 
        4.18        37.78        34.78        15.68         0.99         0.82 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.07              0.46 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           142.49            210.94 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           11.965            16.980 
[1] "0.1 - 142.5 (12.0)" "0.5 - 210.9 (17.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D44V2, continuous
D44V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     22   93
  3P LOSS WILD-TYPE   59  112
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              22                59
  MALE                93               112
D44V4, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1               5                14
  T2              26                53
  T3              40                36
  T4              41                61
D44V5, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0              50                62
  N1              13                31
  N2              45                60
  N3               2                 2
D44V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED    112    2
  3P LOSS WILD-TYPE  170    1
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0             112               170
  M1               2                 1
D44V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     29   86
  3P LOSS WILD-TYPE   47  124
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO               29                47
  YES              86               124
D44V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     18   97
  3P LOSS WILD-TYPE   29  142
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO               18                29
  YES              97               142

Clustering(45) Variable = 3q loss mutation analysis
D45V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED     3   8
  3Q LOSS WILD-TYPE 162 111
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               11               273 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                8               111 
$`3Q LOSS MUTATED`
TCGA-CN-5363 TCGA-CR-7380 TCGA-CR-7398 TCGA-CV-5435 TCGA-CV-5976 TCGA-CV-6952 
        8.28        19.92         5.13        47.28        48.59         6.08 
TCGA-CV-7095 TCGA-CV-7252 TCGA-CV-7418 TCGA-CV-7428 TCGA-HD-7753 
       18.81         4.96        25.94        54.90         0.16 

$`3Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
        4.60         4.37        18.31         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39        28.47        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        29.46        33.80        10.42         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       14.96        26.76        33.07        22.78        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
       31.96         9.17        34.06        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5977 
       64.73        17.06        13.35        17.75        57.07        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       42.35        15.06        30.05        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.12       111.12        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 
      114.94        56.68         4.73        47.47        36.00        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       18.97        17.10        95.34        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       36.13        18.41        35.54       210.94        89.33         9.67 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
        0.46        22.85        25.02         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       14.86        56.48       156.49         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       19.73         7.13       142.49        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 
       11.84         9.83         1.15         0.99         0.07         0.82 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.16              0.07 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            54.90            210.94 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            18.81             13.64 
[1] "0.2 - 54.9 (18.8)"  "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "2"  
D45V2, continuous
D45V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      4    7
  3Q LOSS WILD-TYPE   77  198
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE               4                77
  MALE                 7               198
D45V4, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1               1                18
  T2               2                77
  T3               1                75
  T4               7                95
D45V5, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0               6               106
  N1               1                43
  N2               3               102
  N3               1                 3
D45V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     11    0
  3Q LOSS WILD-TYPE  271    3
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0              11               271
  M1               0                 3
D45V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      2    9
  3Q LOSS WILD-TYPE   74  201
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                2                74
  YES               9               201
D45V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      2    9
  3Q LOSS WILD-TYPE   45  230
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                2                45
  YES               9               230

Clustering(46) Variable = 4p loss mutation analysis
D46V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED    37  30
  4P LOSS WILD-TYPE 128  89
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               67               217 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               30                89 
$`4P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16        13.64        16.08         9.07         8.15         6.25 
TCGA-BA-5555 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6871 TCGA-BB-4223 TCGA-BB-4224 
        6.12        53.75         5.00         2.07        95.05         9.04 
TCGA-BB-4227 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-5360 
        4.37        13.55         4.67        11.28        12.13        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5374 TCGA-CN-6021 TCGA-CN-6989 TCGA-CN-6992 
        8.28        16.21         9.01         9.07         5.82         2.73 
TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-5332 TCGA-CQ-6225 TCGA-CR-5247 TCGA-CR-5248 
        3.29        48.16        10.42        13.25        11.77        54.64 
TCGA-CR-6472 TCGA-CR-6487 TCGA-CR-6491 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7374 
       34.52         7.66        11.51        35.84         3.42         0.99 
TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7398 TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5435 
       27.02        29.82         5.13        48.36       108.33        47.28 
TCGA-CV-5440 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6940 TCGA-CV-6948 
       89.82        90.08         2.14         9.70        26.43        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7101 
       15.06        30.05         2.50         4.14       111.12         5.23 
TCGA-CV-7103 TCGA-CV-7242 TCGA-CV-7261 TCGA-CV-7413 TCGA-CV-7418 TCGA-CV-7430 
       52.31        36.00        36.13         9.67        25.94        16.27 
TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7219 TCGA-D6-6516 TCGA-DQ-5629 TCGA-DQ-7588 
        6.38        10.39        27.22        10.68        16.96        14.04 
TCGA-HD-7753 
        0.16 

$`4P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 
        9.30        27.78        57.90         5.88         7.96        57.44 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
        8.02        14.79        12.99         3.72         7.76         6.12 
TCGA-BB-4225 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4728 
        4.60        18.31         6.31        10.19         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
        5.46        12.59        17.16        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        5.69        12.39        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.52        13.58         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 
        6.61         5.23         1.48         4.41         3.19         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        6.18         7.36         1.38         3.91         3.68         3.75 
TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
        1.51        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       29.46        33.80         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 
       34.75        32.35         4.21        14.96        26.76        33.07 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       22.78        84.23        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       39.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 
       10.22        11.34        11.64        12.46        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7371 TCGA-CR-7372 
       47.18        39.12        47.34        40.90         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 
       17.13        32.78        47.01        12.89        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.92        35.41 
TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5439 
       29.92       135.29        17.16       129.21        19.20        17.95 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6936 TCGA-CV-6937 
       40.96        13.32        24.43         5.88         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        11.24       126.08        19.79        12.03 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       28.31        64.80       126.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        9.01         1.84        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7245 TCGA-CV-7247 
      114.94        56.68         4.73        47.47        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 
       18.41        35.54       210.94        89.33         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
      156.49        54.90         3.48        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 
      142.49        16.60        21.99        10.55         7.76        13.25 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7591 TCGA-DQ-7592 
       37.78        34.78        15.68        18.02        11.84         9.83 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 
        1.15         0.99         0.07         0.82         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.16              0.07 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           111.12            210.94 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            12.13             14.96 
[1] "0.2 - 111.1 (12.1)" "0.1 - 210.9 (15.0)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D46V2, continuous
D46V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     14   53
  4P LOSS WILD-TYPE   67  152
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              14                67
  MALE                53               152
D46V4, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1               5                14
  T2              14                65
  T3              21                55
  T4              24                78
D46V5, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0              21                91
  N1               5                39
  N2              35                70
  N3               2                 2
D46V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     66    1
  4P LOSS WILD-TYPE  216    2
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0              66               216
  M1               1                 2
D46V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     18   49
  4P LOSS WILD-TYPE   58  161
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO               18                58
  YES              49               161
D46V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     13   54
  4P LOSS WILD-TYPE   34  185
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO               13                34
  YES              54               185

Clustering(47) Variable = 4q loss mutation analysis
D47V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED    23  19
  4Q LOSS WILD-TYPE 142 100
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               42               242 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               19               100 
$`4Q LOSS MUTATED`
TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-5558 TCGA-BB-4227 TCGA-CN-4725 TCGA-CN-4735 
        9.07         6.12        53.75         4.37        10.19        12.13 
TCGA-CN-5360 TCGA-CN-6021 TCGA-CN-6997 TCGA-CQ-5323 TCGA-CQ-6225 TCGA-CR-5248 
       28.47         9.07         3.29        48.16        13.25        54.64 
TCGA-CR-6472 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-7370 TCGA-CR-7374 TCGA-CR-7380 
       34.52        11.64         7.66         3.42         0.99        19.92 
TCGA-CR-7388 TCGA-CR-7398 TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 
       27.02         5.13        48.36       108.33        47.28        17.95 
TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6935 TCGA-CV-6954 TCGA-CV-6962 TCGA-CV-7091 
       89.82        40.96         9.70        65.82         4.14       111.12 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7180 TCGA-CV-7261 TCGA-CV-7413 
        5.23        52.31        12.89        10.75        36.13         9.67 
TCGA-CV-7418 TCGA-CV-7430 TCGA-CV-7438 TCGA-CX-7082 TCGA-CX-7219 TCGA-DQ-5629 
       25.94        16.27         6.38        10.39        27.22        16.96 

$`4Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        16.08         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6868 
       27.78        57.90         5.88         7.96        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 TCGA-CN-4722 
        6.12        95.05         9.04         4.60        18.31         6.31 
TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       13.55         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       12.39         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        3.19         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5324 
        2.73         3.91         3.68         3.75         1.51        39.68 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
       21.50         2.93        38.89        27.65        29.46        33.80 
TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 
       10.42         4.21        28.60        32.35        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       32.35         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       84.23        11.77        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       39.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       10.22        11.34        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 
       47.18        39.12        47.34        40.90        35.84         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7382 
       24.95        29.23        31.96         9.17        34.06        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.54         7.10         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5436 
       35.41        29.92       135.29        17.16       129.21        19.20 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 
       13.32        24.43         5.88        90.08         2.14         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       53.92        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       126.12        18.81        12.66         7.99         9.01 
TCGA-CV-7102 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
        1.84        21.76        71.21       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 
        4.96        11.87        47.97         2.10        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 
      210.94        89.33         0.46        22.85        25.02         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
        3.48        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       21.99        10.55         7.76        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 
       34.78        15.68        18.02        14.04        11.84         9.83 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 
        1.15         0.99         0.07         0.16         0.82         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.99              0.07 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           111.12            210.94 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            14.76             13.84 
[1] "1.0 - 111.1 (14.8)" "0.1 - 210.9 (13.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D47V2, continuous
D47V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     11   31
  4Q LOSS WILD-TYPE   70  174
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              11                70
  MALE                31               174
D47V4, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1               3                16
  T2              12                67
  T3               9                67
  T4              15                87
D47V5, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0              17                95
  N1               2                42
  N2              19                86
  N3               0                 4
D47V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     42    0
  4Q LOSS WILD-TYPE  240    3
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0              42               240
  M1               0                 3
D47V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     12   30
  4Q LOSS WILD-TYPE   64  180
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO               12                64
  YES              30               180
D47V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      6   36
  4Q LOSS WILD-TYPE   41  203
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO                6                41
  YES              36               203

Clustering(48) Variable = 5p loss mutation analysis
D48V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED     4   8
  5P LOSS WILD-TYPE 161 111
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               12               272 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                8               111 
$`5P LOSS MUTATED`
TCGA-CN-6021 TCGA-CN-6995 TCGA-CR-7364 TCGA-CV-5432 TCGA-CV-6940 TCGA-CV-6951 
        9.07         3.68        47.18       129.21        26.43        30.05 
TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7435 
        4.14       126.12        35.54         0.46        25.94       142.49 

$`5P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
        4.60         4.37        18.31         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        4.41         3.19         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        5.82         2.73         3.91         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        10.42         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       26.76        33.07        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.06        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 
       29.92        48.36       135.29        17.16       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
        5.88        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
        4.70        21.86        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       42.35        15.06         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7091 
        7.13         8.38        28.31         2.50        64.80       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 
       56.68         4.73        47.47        36.00        26.20        18.97 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
       17.10        95.34         4.96        11.87        47.97         2.10 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 
       36.13        18.41       210.94        89.33         9.67        22.85 
TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
        7.13        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        15.68        18.02        14.04        11.84         9.83 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 
        1.15         0.99         0.07         0.16         0.82         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.46              0.07 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           142.49            210.94 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           28.240            13.565 
[1] "0.5 - 142.5 (28.2)" "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D48V2, continuous
D48V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      4    8
  5P LOSS WILD-TYPE   77  197
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE               4                77
  MALE                 8               197
D48V4, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1               0                19
  T2               3                76
  T3               2                74
  T4               6                96
D48V5, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0               4               108
  N1               1                43
  N2               4               101
  N3               0                 4
D48V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     12    0
  5P LOSS WILD-TYPE  270    3
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0              12               270
  M1               0                 3
D48V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      0   12
  5P LOSS WILD-TYPE   76  198
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                0                76
  YES              12               198
D48V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      0   12
  5P LOSS WILD-TYPE   47  227
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                0                47
  YES              12               227

Clustering(49) Variable = 5q loss mutation analysis
D49V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    36  27
  5Q LOSS WILD-TYPE 129  92
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               63               221 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               27                92 
$`5Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6868 TCGA-BA-7269 TCGA-BB-4224 
       15.16         9.07         6.12         5.00         7.76         9.04 
TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4731 TCGA-CN-4737 TCGA-CN-4739 TCGA-CN-5360 
       10.19         6.38        12.59         7.89        11.44        28.47 
TCGA-CN-6010 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6995 
        6.81         9.07         7.36         1.38         2.73         3.68 
TCGA-CQ-5332 TCGA-CQ-6225 TCGA-CQ-7065 TCGA-CR-5247 TCGA-CR-6493 TCGA-CR-7364 
       10.42        13.25        33.07        11.77         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7390 TCGA-CR-7398 
       39.12        35.84         3.42         3.06        29.82         5.13 
TCGA-CR-7399 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5440 TCGA-CV-6003 TCGA-CV-6933 
        5.92       129.21       108.33        89.82        40.96        90.08 
TCGA-CV-6940 TCGA-CV-6951 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7090 
       26.43        30.05         7.13        28.31         4.14       126.12 
TCGA-CV-7091 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7255 
      111.12         5.23        52.31        21.76        10.75         2.10 
TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7424 
       36.13        35.54         0.46        25.94         0.07        14.86 
TCGA-CV-7435 TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6823 TCGA-DQ-5629 TCGA-DQ-5631 
      142.49        10.39         7.76         7.82        16.96        18.02 
TCGA-DQ-7592 TCGA-F7-7848 TCGA-HD-7753 
        9.83         1.15         0.16 

$`5Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        16.08         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
       57.90         5.88         7.96        53.75        57.44         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
       14.79         2.07        12.99         3.72         6.12        95.05 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 
        4.60         4.37        18.31         6.31        13.55         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
       10.68         5.46        11.28        17.16        12.13        12.99 
TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       14.33        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 
       11.57        12.49         8.52        13.58         9.01         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 
        3.19         6.61         6.18         5.82         3.91         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 
       38.89        27.65        29.46        33.80         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        32.88        34.75        32.35         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       26.76        22.78        84.23        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7367 TCGA-CR-7368 
        7.66        12.46        11.51        15.75        47.34        40.90 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       12.89        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        7.10        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       33.11         7.07        43.23        13.32        24.43         5.88 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6961 
        6.08        53.92        65.82        10.98         8.38         2.50 
TCGA-CV-7089 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 
       64.80        18.81        12.66         7.99         9.01         1.84 
TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       12.89        71.21       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7263 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
       11.87        47.97        18.41       210.94        89.33         9.67 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 
       22.85        25.02        34.09       100.54        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 
       16.60         6.38        21.99        10.55        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
       10.68         8.22         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-H7-7774 
       37.78        34.78        15.68        14.04        11.84         0.99 
TCGA-HD-7229 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.07         0.82         5.26         4.01         3.72 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.07              0.07 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           142.49            210.94 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            10.42             15.68 
[1] "0.1 - 142.5 (10.4)" "0.1 - 210.9 (15.7)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D49V2, continuous
D49V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     13   50
  5Q LOSS WILD-TYPE   68  155
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              13                68
  MALE                50               155
D49V4, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1               2                17
  T2              19                60
  T3              20                56
  T4              21                81
D49V5, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0              25                87
  N1               9                35
  N2              25                80
  N3               1                 3
D49V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     63    0
  5Q LOSS WILD-TYPE  219    3
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0              63               219
  M1               0                 3
D49V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     16   47
  5Q LOSS WILD-TYPE   60  163
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO               16                60
  YES              47               163
D49V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     11   52
  5Q LOSS WILD-TYPE   36  187
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO               11                36
  YES              52               187

Clustering(50) Variable = 6p loss mutation analysis
D50V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    15  12
  6P LOSS WILD-TYPE 150 107
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               27               257 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               12               107 
$`6P LOSS MUTATED`
TCGA-BA-5152 TCGA-BB-4225 TCGA-BB-4227 TCGA-CN-4735 TCGA-CN-5364 TCGA-CN-6010 
       27.78         4.60         4.37        12.13        16.21         6.81 
TCGA-CN-6988 TCGA-CN-6994 TCGA-CN-6997 TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CQ-6223 
        1.38         3.91         3.29        10.42        32.88        34.75 
TCGA-CR-7371 TCGA-CR-7399 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5443 
        3.06         5.92       108.33        47.28        19.20        84.39 
TCGA-CV-6934 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7247 TCGA-CV-7430 TCGA-DQ-5624 
        2.14        28.31         4.14        18.97        16.27        37.78 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-HD-7753 
       14.04        11.84         0.16 

$`6P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 
       57.44         5.00         8.02        14.79         2.07        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4228 
        3.72         7.76         6.12        95.05         9.04        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 
        5.46        11.28        12.59        17.16        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5365 
        9.50         5.69        12.39        28.47         8.28        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 
        5.82         2.73         3.68         3.75         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6224 TCGA-CQ-6225 
       33.80         4.21        28.60        32.35        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 
        4.21        14.96        26.76        33.07        22.78        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       39.52        34.52        36.99        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.42        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5966 
       17.95        89.82        87.55        76.47        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        8.38         2.50        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        36.00        26.20        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49        54.90         3.48        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5625 
        7.82         2.53         5.00         5.03         4.18        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 
       16.96        15.68        18.02         9.83         1.15         0.99 
TCGA-HD-7229 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.07         0.82         5.26         4.01         3.72 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.16              0.07 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           108.33            210.94 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            12.13             14.33 
[1] "0.2 - 108.3 (12.1)" "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D50V2, continuous
D50V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      4   23
  6P LOSS WILD-TYPE   77  182
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE               4                77
  MALE                23               182
D50V4, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1               1                18
  T2               3                76
  T3              12                64
  T4              11                91
D50V5, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0               9               103
  N1               3                41
  N2              13                92
  N3               0                 4
D50V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     27    0
  6P LOSS WILD-TYPE  255    3
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0              27               255
  M1               0                 3
D50V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      8   19
  6P LOSS WILD-TYPE   68  191
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                8                68
  YES              19               191
D50V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      6   21
  6P LOSS WILD-TYPE   41  218
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                6                41
  YES              21               218

Clustering(51) Variable = 6q loss mutation analysis
D51V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    15  13
  6Q LOSS WILD-TYPE 150 106
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               28               256 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               13               106 
$`6Q LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-5152 TCGA-BB-4225 TCGA-CN-4736 TCGA-CN-6010 TCGA-CN-6988 
       13.64        27.78         4.60        12.99         6.81         1.38 
TCGA-CN-6994 TCGA-CQ-6223 TCGA-CR-5248 TCGA-CR-6473 TCGA-CR-6491 TCGA-CR-7399 
        3.91        34.75        54.64        36.99        11.51         5.92 
TCGA-CR-7404 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5443 TCGA-CV-6441 TCGA-CV-6953 
       48.36       108.33        47.28        84.39         5.88        53.92 
TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-7247 TCGA-CV-7253 TCGA-CV-7430 TCGA-DQ-5624 
       65.82        28.31        18.97        11.87        16.27        37.78 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-HD-7753 
       18.02        14.04        11.84         0.16 

$`6Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        16.08         9.07         8.15         6.25 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
        5.00         8.02        14.79         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-BB-4228 
        7.76         6.12        95.05         9.04         4.37        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4737 
        5.46        11.28        12.59        17.16        12.13         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        7.36         5.82         2.73         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        29.46        33.80        10.42         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.35        32.88        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5249 
       26.76        33.07        22.78        84.23        11.77        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 
       26.24        58.42        50.01        39.52        34.52        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
        7.66        12.46        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CV-5430 TCGA-CV-5431 
        7.10         5.13        35.41        29.92       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      129.21        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 
       42.35        15.06        30.05         6.08        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
        8.38         2.50         4.14        64.80       126.12       111.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 
       56.68         4.73        47.47        36.00        26.20        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        47.97         2.10        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49        54.90         3.48        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
        7.13       142.49        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5625 
        7.82         2.53         5.00         5.03         4.18        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 
       16.96        15.68         9.83         1.15         0.99         0.07 
TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         5.26         4.01         3.72 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.16              0.07 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           108.33            210.94 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           17.145            13.450 
[1] "0.2 - 108.3 (17.1)" "0.1 - 210.9 (13.4)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D51V2, continuous
D51V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      4   24
  6Q LOSS WILD-TYPE   77  181
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE               4                77
  MALE                24               181
D51V4, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1               2                17
  T2               2                77
  T3              11                65
  T4              12                90
D51V5, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0              13                99
  N1               2                42
  N2              12                93
  N3               0                 4
D51V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     28    0
  6Q LOSS WILD-TYPE  254    3
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0              28               254
  M1               0                 3
D51V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      6   22
  6Q LOSS WILD-TYPE   70  188
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                6                70
  YES              22               188
D51V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      3   25
  6Q LOSS WILD-TYPE   44  214
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                3                44
  YES              25               214

Clustering(52) Variable = 7p loss mutation analysis
D52V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED     3   3
  7P LOSS WILD-TYPE 162 116
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                6               278 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                3               116 
$`7P LOSS MUTATED`
TCGA-CR-6473 TCGA-CV-5435 TCGA-CV-5976 TCGA-CV-7242 TCGA-CV-7421 TCGA-CV-7430 
       36.99        47.28        48.59        36.00         0.07        16.27 

$`7P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
       53.75        57.44         5.00         8.02        14.79         2.07 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
        4.60         4.37        18.31         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
       12.39        28.47         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        1.38         5.82         2.73         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.29         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 
       38.89        27.65        29.46        33.80        10.42         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 
        4.21        14.96        26.76        33.07        22.78        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       11.77        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       39.52        34.52        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      129.21       108.33        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       57.07        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
       19.79        12.03        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       53.92        65.82        10.98         7.13         8.38        28.31 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 
       12.66         7.99         9.01         5.23         1.84        52.31 
TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       12.89        21.76        71.21        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
        4.73        47.47        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.02        25.94        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
      156.49        54.90         3.48        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        15.68        18.02        14.04        11.84         9.83 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 
        1.15         0.99         0.07         0.16         0.82         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.07              0.07 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            48.59            210.94 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
           36.495            13.565 
[1] "0.1 - 48.6 (36.5)"  "0.1 - 210.9 (13.6)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1    5
  7P LOSS WILD-TYPE   80  200
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               1                80
  MALE                 5               200
D52V4, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1               0                19
  T2               0                79
  T3               0                76
  T4               5                97
D52V5, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0               3               109
  N1               1                43
  N2               1               104
  N3               0                 4
D52V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      6    0
  7P LOSS WILD-TYPE  276    3
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  M0               6               276
  M1               0                 3
D52V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1    5
  7P LOSS WILD-TYPE   75  205
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                1                75
  YES               5               205
D52V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1    5
  7P LOSS WILD-TYPE   46  234
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                1                46
  YES               5               234

Clustering(53) Variable = 7q loss mutation analysis
D53V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED    14   6
  7Q LOSS WILD-TYPE 151 113
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               20               264 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6               113 
$`7Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5152 TCGA-BA-6868 TCGA-BB-4224 TCGA-CN-4731 
       15.16        13.64        27.78         5.00         9.04        12.59 
TCGA-CN-4735 TCGA-CN-6988 TCGA-CQ-6221 TCGA-CR-5247 TCGA-CR-7374 TCGA-CR-7385 
       12.13         1.38        32.88        11.77         0.99        32.78 
TCGA-CR-7398 TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7091 TCGA-CV-7415 
        5.13        65.82        28.31         2.50       111.12        22.85 
TCGA-CV-7435 TCGA-CX-7219 
      142.49        27.22 

$`7Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 
        9.30        16.08         9.07         8.15         6.25        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 
        6.12         5.88         7.96        53.75        57.44         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
       14.79         2.07        12.99         3.72         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 
       95.05         4.60         4.37        18.31         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       17.16        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 
        3.19         9.07         6.61         6.18         7.36         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        10.42         4.21        28.60        32.35 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       33.07        22.78        84.23        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
       39.12        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       24.95        29.23        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       26.17        17.13        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 
       40.96        13.32        24.43         5.88        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
       30.05         6.08        53.92        10.98         7.13         8.38 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        4.14        64.80       126.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         9.67         0.46        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 
       18.02        14.04        11.84         9.83         1.15         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.07         0.16         0.82         5.26         4.01         3.72 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.99              0.07 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
           142.49            210.94 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            14.40             13.81 
[1] "1.0 - 142.5 (14.4)" "0.1 - 210.9 (13.8)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D53V2, continuous
D53V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      4   16
  7Q LOSS WILD-TYPE   77  189
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE               4                77
  MALE                16               189
D53V4, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1               2                17
  T2               5                74
  T3               6                70
  T4               7                95
D53V5, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0               7               105
  N1               1                43
  N2              10                95
  N3               1                 3
D53V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED     20    0
  7Q LOSS WILD-TYPE  262    3
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0              20               262
  M1               0                 3
D53V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      4   16
  7Q LOSS WILD-TYPE   72  194
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                4                72
  YES              16               194
D53V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      4   16
  7Q LOSS WILD-TYPE   43  223
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                4                43
  YES              16               223

Clustering(54) Variable = 8p loss mutation analysis
D54V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED    24  39
  8P LOSS WILD-TYPE 141  80
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               63               221 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               39                80 
$`8P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-5152 TCGA-BA-6870 TCGA-BA-7269 TCGA-BB-4224 
       15.16        13.64        27.78        14.79         7.76         9.04 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4736 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5365 
       10.19         4.67        12.99        28.47         8.28        11.54 
TCGA-CN-5367 TCGA-CN-5370 TCGA-CN-6011 TCGA-CN-6992 TCGA-CN-6997 TCGA-CQ-5326 
       11.57         8.52         7.50         2.73         3.29         2.93 
TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-7364 
       10.42         4.21        32.35        13.25        14.96        47.18 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7380 TCGA-CR-7388 TCGA-CR-7399 
       24.95        29.23         0.99        19.92        27.02         5.92 
TCGA-CV-5434 TCGA-CV-5966 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-6935 TCGA-CV-6936 
      108.33        17.06        57.07        48.59         9.70         5.46 
TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-7097 
        6.08        65.82         7.13         8.38        28.31        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7247 TCGA-CV-7255 
        7.99         9.01         1.84        12.89        18.97         2.10 
TCGA-CV-7414 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7427 TCGA-CV-7430 TCGA-CV-7434 
        0.46         0.07       100.54       156.49        16.27         7.13 
TCGA-CV-7435 TCGA-CV-7438 TCGA-CX-7082 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6825 
      142.49         6.38        10.39         8.22         7.82         5.00 
TCGA-D6-6826 TCGA-HD-7229 TCGA-HD-7753 
        5.03         0.07         0.16 

$`8P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5153 
        9.30        16.08         9.07         8.15         6.25        57.90 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
        6.12         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
        8.02         2.07        12.99         3.72         6.12        95.05 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4727 
        4.60         4.37        18.31         6.31        13.55         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5366 
        9.17         9.50         5.69        12.39        16.21        11.84 
TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 
       12.49        13.58         9.01         6.81         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 
        6.61         6.18         7.36         1.38         5.82         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.68         3.75         1.51        48.16        39.68        21.50 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-6218 TCGA-CQ-6220 
       38.89        27.65        29.46        33.80        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       32.88        34.75         4.21        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 
       12.46        11.51        15.75         9.27        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7376 TCGA-CR-7377 
       40.90        35.84         3.42         3.06        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 
       34.06        26.17        17.13        32.78        47.01        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        7.10         5.13        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
       17.16       129.21        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 
       87.55        76.47        84.39        64.73        13.35        17.75 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        5.88        90.08         2.14        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6961 TCGA-CV-6962 
       15.06        30.05        53.92        10.98         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7101 TCGA-CV-7103 
       64.80       126.12       111.12        18.81         5.23        52.31 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       47.47        36.00        26.20        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
       11.87        47.97        36.13        18.41        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 
       89.33         9.67        22.85        25.02        25.94        34.09 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 
       14.86        56.48        54.90         3.48        84.49        19.73 
TCGA-CV-7437 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       16.60        21.99        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6824 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
       10.68         2.53         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 
       15.68        18.02        14.04        11.84         9.83         1.15 
TCGA-H7-7774 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.82         5.26         4.01         3.72 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.07              0.82 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           156.49            210.94 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            10.19             16.90 
[1] "0.1 - 156.5 (10.2)" "0.8 - 210.9 (16.9)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
[1] "hr=" "2.3"
D54V2, continuous
D54V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     18   45
  8P LOSS WILD-TYPE   63  160
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              18                63
  MALE                45               160
D54V4, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1               6                13
  T2              15                64
  T3              21                55
  T4              20                82
D54V5, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0              26                86
  N1               9                35
  N2              23                82
  N3               2                 2
D54V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     60    2
  8P LOSS WILD-TYPE  222    1
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0              60               222
  M1               2                 1
D54V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     14   49
  8P LOSS WILD-TYPE   62  161
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO               14                62
  YES              49               161
D54V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     10   53
  8P LOSS WILD-TYPE   37  186
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO               10                37
  YES              53               186

Clustering(55) Variable = 8q loss mutation analysis
D55V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED     5   5
  8Q LOSS WILD-TYPE 160 114
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               10               274 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                5               114 
$`8Q LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-6870 TCGA-CN-5360 TCGA-CN-5367 TCGA-CN-6011 TCGA-CR-7374 
       13.64        14.79        28.47        11.57         7.50         0.99 
TCGA-CV-6956 TCGA-CV-7100 TCGA-CV-7242 TCGA-CV-7435 
        7.13         9.01        36.00       142.49 

$`8Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        16.08         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         5.00         8.02         2.07        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       18.31         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 
       13.05         9.17         9.50         5.69        12.39         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       16.21        11.54        11.84        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        9.01         6.81         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 
       89.82        87.55        76.47        84.39        64.73        17.06 
TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       13.35        17.75        57.07        48.59        33.11         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 
       43.23        40.96        13.32        24.43         5.88        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        8.38        28.31         2.50         4.14        64.80       126.12 
TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 TCGA-CV-7102 
      111.12        18.81        12.66         7.99         5.23         1.84 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 
       56.68         4.73        47.47        26.20        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 
       18.41        35.54       210.94        89.33         9.67         0.46 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 
       22.85        25.02        25.94         0.07        34.09       100.54 
TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 
       14.86        56.48       156.49        54.90         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 
       84.49        19.73         7.13        16.60         6.38        21.99 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 
       10.39        10.55         7.76        27.22        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 
        8.22         7.82         2.53         5.00         5.03         4.18 
TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
       37.78        34.78        16.96        15.68        18.02        14.04 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 
       11.84         9.83         1.15         0.99         0.07         0.16 
TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         5.26         4.01         3.72 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.99              0.07 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
           142.49            210.94 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
           12.605            14.185 
[1] "1.0 - 142.5 (12.6)" "0.1 - 210.9 (14.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D55V2, continuous
D55V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      5    5
  8Q LOSS WILD-TYPE   76  200
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               5                76
  MALE                 5               200
D55V4, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1               0                19
  T2               3                76
  T3               2                74
  T4               5                97
D55V5, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0               5               107
  N1               1                43
  N2               4               101
  N3               0                 4
D55V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      9    1
  8Q LOSS WILD-TYPE  273    2
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0               9               273
  M1               1                 2
D55V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      4    6
  8Q LOSS WILD-TYPE   72  204
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                4                72
  YES               6               204
D55V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      4    6
  8Q LOSS WILD-TYPE   43  233
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                4                43
  YES               6               233

Clustering(56) Variable = 9p loss mutation analysis
D56V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED    46  36
  9P LOSS WILD-TYPE 119  83
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               82               202 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               36                83 
$`9P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6868 TCGA-BA-6869 
       15.16        13.64         9.07         6.12         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4224 TCGA-CN-4723 
       14.79         2.07        12.99         7.76         9.04        13.55 
TCGA-CN-4726 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4735 TCGA-CN-4737 
        4.67         5.46        11.28        12.59        12.13         7.89 
TCGA-CN-5360 TCGA-CN-5367 TCGA-CN-5373 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6992 
       28.47        11.57        13.58         7.36         1.38         2.73 
TCGA-CN-6997 TCGA-CQ-5326 TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CQ-6225 TCGA-CQ-6228 
        3.29         2.93        10.42        32.88        13.25        14.96 
TCGA-CQ-7065 TCGA-CR-5247 TCGA-CR-6472 TCGA-CR-6491 TCGA-CR-7364 TCGA-CR-7368 
       33.07        11.77        34.52        11.51        47.18        40.90 
TCGA-CR-7374 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7398 TCGA-CV-5430 TCGA-CV-5432 
        0.99        27.02        29.82         5.13       135.29       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5979 
      108.33        47.28        19.20        57.07        48.59        43.23 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6945 TCGA-CV-6948 
        5.88        90.08         2.14         9.70        12.03        42.35 
TCGA-CV-6960 TCGA-CV-7091 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
       28.31       111.12         1.84        52.31        12.89        21.76 
TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 
       10.75        36.00        26.20         4.96        11.87         2.10 
TCGA-CV-7263 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7435 TCGA-CX-7082 
       18.41         9.67        22.85         0.07       142.49        10.39 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6823 TCGA-DQ-5629 TCGA-DQ-5631 TCGA-DQ-7588 
        7.76        27.22         7.82        16.96        18.02        14.04 
TCGA-F7-7848 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 
        1.15         0.16         0.82         5.26 

$`9P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 
        9.30        16.08         8.15         6.25        27.78        57.90 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6873 TCGA-BB-4217 
        5.88         7.96        53.75        57.44         3.72         6.12 
TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4725 
       95.05         4.60         4.37        18.31         6.31        10.19 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
        6.38        10.68        17.16        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 
       12.39         8.28        16.21        11.54        11.84        12.49 
TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.52         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        6.61         6.18         5.82         3.91         3.68         3.75 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 
        1.51        48.16        39.68        21.50        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 
       29.46        33.80         4.21        28.60        32.35        34.75 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 
       32.35         4.21        26.76        22.78        84.23        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6473 
       37.87        26.24        58.42        50.01        39.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 
       11.64         7.66        12.46        15.75         9.27        39.12 
TCGA-CR-7367 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        35.84         3.42         3.06        24.95        29.23 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       32.78        47.01        12.89        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       48.36        17.16        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5977 
       84.39        64.73        17.06        13.35        17.75        33.11 
TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6936 TCGA-CV-6937 
        7.07        40.96        13.32        24.43         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38         2.50         4.14        64.80       126.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7178 
       18.81        12.66         7.99         9.01         5.23        71.21 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7248 
      114.94        56.68         4.73        47.47        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
       95.34        47.97        36.13        35.54       210.94        89.33 
TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
        0.46        25.02        25.94        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 
       19.73         7.13        16.60         6.38        21.99        10.55 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25        10.68         8.22         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-7591 TCGA-DQ-7592 
        4.18        37.78        34.78        15.68        11.84         9.83 
TCGA-H7-7774 TCGA-HD-7229 TCGA-IQ-7631 TCGA-IQ-7632 
        0.99         0.07         4.01         3.72 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.07              0.07 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           142.49            210.94 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            12.36             16.24 
[1] "0.1 - 142.5 (12.4)" "0.1 - 210.9 (16.2)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D56V2, continuous
D56V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     20   62
  9P LOSS WILD-TYPE   61  143
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              20                61
  MALE                62               143
D56V4, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1               4                15
  T2              21                58
  T3              29                47
  T4              26                76
D56V5, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0              27                85
  N1              12                32
  N2              39                66
  N3               1                 3
D56V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     80    2
  9P LOSS WILD-TYPE  202    1
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0              80               202
  M1               2                 1
D56V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     21   61
  9P LOSS WILD-TYPE   55  149
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO               21                55
  YES              61               149
D56V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     12   70
  9P LOSS WILD-TYPE   35  169
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO               12                35
  YES              70               169

Clustering(57) Variable = 9q loss mutation analysis
D57V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED    16  11
  9Q LOSS WILD-TYPE 149 108
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               27               257 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               11               108 
$`9Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-6871 TCGA-BA-7269 TCGA-CN-4729 TCGA-CN-4735 TCGA-CR-5247 
       15.16         2.07         7.76         5.46        12.13        11.77 
TCGA-CR-6472 TCGA-CR-7364 TCGA-CR-7374 TCGA-CV-5430 TCGA-CV-5435 TCGA-CV-5973 
       34.52        47.18         0.99       135.29        47.28        57.07 
TCGA-CV-5979 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6945 TCGA-CV-7091 
       43.23         5.88        90.08        26.43        12.03       111.12 
TCGA-CV-7102 TCGA-CV-7252 TCGA-CV-7255 TCGA-CV-7413 TCGA-CV-7435 TCGA-D6-6823 
        1.84         4.96         2.10         9.67       142.49         7.82 
TCGA-DQ-5631 TCGA-F7-7848 TCGA-HD-7753 
       18.02         1.15         0.16 

$`9Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
        9.30        13.64        16.08         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       57.44         5.00         8.02        14.79        12.99         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       11.28        12.59        17.16        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 
       84.23        54.64        37.87        26.24        58.42        50.01 
TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       39.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
       15.75         9.27        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 
        3.42         3.06        24.95        29.23        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 
       29.52        30.54         7.10         5.13         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 
       29.92        48.36        17.16       129.21       108.33        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 
       17.06        13.35        17.75        48.59        33.11         7.07 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       40.96        13.32        24.43         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        11.24       126.08        19.79 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       126.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        5.23        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 
      114.94        56.68         4.73        47.47        36.00        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7261 
       18.97        17.10        95.34        11.87        47.97        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 
       18.41        35.54       210.94        89.33         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 
       25.02        25.94         0.07        34.09       100.54        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 
       56.48       156.49        54.90         3.48        16.27        84.49 
TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 
       19.73         7.13        16.60         6.38        21.99        10.39 
TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 
       10.55         7.76        27.22        13.25        10.68         8.22 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-H7-7774 
       16.96        15.68        14.04        11.84         9.83         0.99 
TCGA-HD-7229 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.07         0.82         5.26         4.01         3.72 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.16              0.07 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           142.49            210.94 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            12.03             14.33 
[1] "0.2 - 142.5 (12.0)" "0.1 - 210.9 (14.3)"
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4074        TCGA-BA-4075        TCGA-BA-4076        TCGA-BA-4077 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-4078        TCGA-BA-5149        TCGA-BA-5151        TCGA-BA-5152 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5153        TCGA-BA-5555        TCGA-BA-5556        TCGA-BA-5557 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-5558        TCGA-BA-5559        TCGA-BA-6868        TCGA-BA-6869 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-6870        TCGA-BA-6871        TCGA-BA-6872        TCGA-BA-6873 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BA-7269        TCGA-BB-4217        TCGA-BB-4223        TCGA-BB-4224 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BB-4225        TCGA-BB-4227        TCGA-BB-4228        TCGA-CN-4722 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4723        TCGA-CN-4725        TCGA-CN-4726        TCGA-CN-4727 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4728        TCGA-CN-4729        TCGA-CN-4730        TCGA-CN-4731 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4733        TCGA-CN-4735        TCGA-CN-4736        TCGA-CN-4737 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4738        TCGA-CN-4739        TCGA-CN-4740        TCGA-CN-4741 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-4742        TCGA-CN-5355        TCGA-CN-5356        TCGA-CN-5358 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5359        TCGA-CN-5360        TCGA-CN-5363        TCGA-CN-5364 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5365        TCGA-CN-5366        TCGA-CN-5367        TCGA-CN-5369 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-5370        TCGA-CN-5373        TCGA-CN-5374        TCGA-CN-6010 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6011        TCGA-CN-6012        TCGA-CN-6013        TCGA-CN-6016 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6017        TCGA-CN-6018        TCGA-CN-6019        TCGA-CN-6020 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6021        TCGA-CN-6022        TCGA-CN-6023        TCGA-CN-6024 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6988        TCGA-CN-6989        TCGA-CN-6992        TCGA-CN-6994 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CN-6995        TCGA-CN-6996        TCGA-CN-6997        TCGA-CN-6998 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5323        TCGA-CQ-5324        TCGA-CQ-5325        TCGA-CQ-5326 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5327        TCGA-CQ-5329        TCGA-CQ-5330        TCGA-CQ-5331 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-5332        TCGA-CQ-5334        TCGA-CQ-6218        TCGA-CQ-6220 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6221        TCGA-CQ-6223        TCGA-CQ-6224        TCGA-CQ-6225 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-6227        TCGA-CQ-6228        TCGA-CQ-6229        TCGA-CQ-7065 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CQ-7068        TCGA-CR-5243        TCGA-CR-5247        TCGA-CR-5248 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CR-5249        TCGA-CR-5250        TCGA-CR-6467        TCGA-CR-6470 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6471        TCGA-CR-6472        TCGA-CR-6473        TCGA-CR-6474 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6477        TCGA-CR-6478        TCGA-CR-6480        TCGA-CR-6481 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6482        TCGA-CR-6484        TCGA-CR-6487        TCGA-CR-6488 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-6491        TCGA-CR-6492        TCGA-CR-6493        TCGA-CR-7364 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CR-7365        TCGA-CR-7367        TCGA-CR-7368        TCGA-CR-7369 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7370        TCGA-CR-7371        TCGA-CR-7372        TCGA-CR-7373 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7374        TCGA-CR-7376        TCGA-CR-7377        TCGA-CR-7379 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7380        TCGA-CR-7382        TCGA-CR-7383        TCGA-CR-7385 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7386        TCGA-CR-7388        TCGA-CR-7389        TCGA-CR-7390 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7391        TCGA-CR-7392        TCGA-CR-7393        TCGA-CR-7394 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7395        TCGA-CR-7397        TCGA-CR-7398        TCGA-CR-7399 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CR-7401        TCGA-CR-7402        TCGA-CR-7404        TCGA-CV-5430 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5431        TCGA-CV-5432        TCGA-CV-5434        TCGA-CV-5435 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-5436        TCGA-CV-5439        TCGA-CV-5440        TCGA-CV-5441 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5442        TCGA-CV-5443        TCGA-CV-5444        TCGA-CV-5966 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5970        TCGA-CV-5971        TCGA-CV-5973        TCGA-CV-5976 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-5977        TCGA-CV-5978        TCGA-CV-5979        TCGA-CV-6003 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6433        TCGA-CV-6436        TCGA-CV-6441        TCGA-CV-6933 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-CV-6934        TCGA-CV-6935        TCGA-CV-6936        TCGA-CV-6937 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6938        TCGA-CV-6939        TCGA-CV-6940        TCGA-CV-6941 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6942        TCGA-CV-6943        TCGA-CV-6945        TCGA-CV-6948 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6950        TCGA-CV-6951        TCGA-CV-6952        TCGA-CV-6953 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6954        TCGA-CV-6955        TCGA-CV-6956        TCGA-CV-6959 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-6960        TCGA-CV-6961        TCGA-CV-6962        TCGA-CV-7089 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7090        TCGA-CV-7091        TCGA-CV-7095        TCGA-CV-7097 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7099        TCGA-CV-7100        TCGA-CV-7101        TCGA-CV-7102 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7103        TCGA-CV-7104        TCGA-CV-7177        TCGA-CV-7178 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7180        TCGA-CV-7183        TCGA-CV-7235        TCGA-CV-7236 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7238        TCGA-CV-7242        TCGA-CV-7245        TCGA-CV-7247 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7248        TCGA-CV-7250        TCGA-CV-7252        TCGA-CV-7253 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7254        TCGA-CV-7255        TCGA-CV-7261        TCGA-CV-7263 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7407        TCGA-CV-7410        TCGA-CV-7411        TCGA-CV-7413 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CV-7414        TCGA-CV-7415        TCGA-CV-7416        TCGA-CV-7418 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7421        TCGA-CV-7422        TCGA-CV-7423        TCGA-CV-7424 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7425        TCGA-CV-7427        TCGA-CV-7428        TCGA-CV-7429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7430        TCGA-CV-7432        TCGA-CV-7433        TCGA-CV-7434 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CV-7435        TCGA-CV-7437        TCGA-CV-7438        TCGA-CV-7440 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-CX-7082        TCGA-CX-7085        TCGA-CX-7086        TCGA-CX-7219 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-D6-6515        TCGA-D6-6516        TCGA-D6-6517        TCGA-D6-6823 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-D6-6824        TCGA-D6-6825        TCGA-D6-6826        TCGA-D6-6827 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5624        TCGA-DQ-5625        TCGA-DQ-5629        TCGA-DQ-5630 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DQ-5631        TCGA-DQ-7588        TCGA-DQ-7591        TCGA-DQ-7592 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-F7-7848        TCGA-H7-7774        TCGA-HD-7229        TCGA-HD-7753 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HD-7754        TCGA-IQ-7630        TCGA-IQ-7631        TCGA-IQ-7632 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D57V2, continuous
D57V3, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      8   19
  9Q LOSS WILD-TYPE   73  186
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE               8                73
  MALE                19               186
D57V4, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1               2                17
  T2               6                73
  T3              11                65
  T4               6                96
D57V5, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0               9               103
  N1               8                36
  N2               9                96
  N3               0                 4
D57V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     26    1
  9Q LOSS WILD-TYPE  256    2
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0              26               256
  M1               1                 2
D57V7, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      7   20
  9Q LOSS WILD-TYPE   69  190
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                7                69
  YES              20               190
D57V8, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      3   24
  9Q LOSS WILD-TYPE   44  215
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                3                44
  YES              24               215

Clustering(58) Variable = 10p loss mutation analysis
D58V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    23  20
  10P LOSS WILD-TYPE 142  99
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                43                241 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                20                 99 
$`10P LOSS MUTATED`
TCGA-BA-4078 TCGA-BA-6868 TCGA-BA-6873 TCGA-BA-7269 TCGA-CN-4723 TCGA-CN-4737 
        9.07         5.00         3.72         7.76        13.55         7.89 
TCGA-CN-5355 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-6011 TCGA-CN-6018 TCGA-CN-6988 
        9.17        28.47         8.28         7.50         1.48         1.38 
TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-6225 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7389 
        3.75        48.16        13.25        35.84         3.42        12.89 
TCGA-CR-7398 TCGA-CV-5435 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5979 TCGA-CV-6936 
        5.13        47.28        64.73        17.06        43.23         5.46 
TCGA-CV-6942 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7090 
      126.08         6.08        65.82         2.50         4.14       126.12 
TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7178 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7418 
        9.01         1.84        71.21        26.20        18.97        25.94 
TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7434 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6826 
       14.86        54.90         7.13         8.22         7.82         5.03 
TCGA-DQ-5631 
       18.02 

$`10P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        16.08         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BB-4217 
       57.44         8.02        14.79         2.07        12.99         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 
       95.05         9.04         4.60         4.37        18.31         6.31 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.13        12.99        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       26.63        28.77        13.05         9.50         5.69        12.39 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 
       16.21        11.54        11.84        11.57        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
       13.58         9.01         6.81         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        5.23         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6997 
        7.36         5.82         2.73         3.91         3.68         3.29 
TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
        1.51        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        10.42         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.88        34.75        32.35         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7371 TCGA-CR-7372 
       47.18        39.12        47.34        40.90         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 
       26.17        17.13        32.78        47.01        27.02        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      129.21       108.33        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       76.47        84.39        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       33.11         7.07        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
       90.08         2.14         9.70        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       26.43        11.24        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 
       30.05        53.92        10.98         7.13         8.38        28.31 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 
       64.80       111.12        18.81        12.66         7.99         5.23 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        10.75       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
        4.73        47.47        36.00        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 
        0.07        34.09       100.54        56.48       156.49         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       16.27        84.49        19.73       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
       10.68         2.53         5.00         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 
       16.96        15.68        14.04        11.84         9.83         1.15 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         0.07         0.16         0.82         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              1.38               0.07 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            126.12             210.94 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              9.07              15.06 
[1] "1.4 - 126.1 (9.1)"  "0.1 - 210.9 (15.1)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D58V2, continuous
D58V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     10   33
  10P LOSS WILD-TYPE   71  172
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               10                 71
  MALE                 33                172
D58V4, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1                0                 19
  T2               12                 67
  T3               10                 66
  T4               21                 81
D58V5, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0               18                 94
  N1                6                 38
  N2               16                 89
  N3                2                  2
D58V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     43    0
  10P LOSS WILD-TYPE  239    3
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0               43                239
  M1                0                  3
D58V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     12   31
  10P LOSS WILD-TYPE   64  179
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                12                 64
  YES               31                179
D58V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      6   37
  10P LOSS WILD-TYPE   41  202
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 6                 41
  YES               37                202

Clustering(59) Variable = 10q loss mutation analysis
D59V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    13  15
  10Q LOSS WILD-TYPE 152 104
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                28                256 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                15                104 
$`10Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-CN-4727 TCGA-CN-5355 TCGA-CN-5360 
       15.16         9.07         6.12         6.38         9.17        28.47 
TCGA-CN-6021 TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CR-6470 TCGA-CR-7369 TCGA-CR-7370 
        9.07        13.25        14.96        50.01        35.84         3.42 
TCGA-CR-7374 TCGA-CR-7389 TCGA-CR-7398 TCGA-CV-5435 TCGA-CV-5979 TCGA-CV-6936 
        0.99        12.89         5.13        47.28        43.23         5.46 
TCGA-CV-6940 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7245 
       26.43        28.31         2.50         4.14       126.12        26.20 
TCGA-CV-7418 TCGA-CV-7424 TCGA-D6-6823 TCGA-DQ-5631 
       25.94        14.86         7.82        18.02 

$`10Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        16.08         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.90         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        8.02        14.79         2.07        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55        10.19         4.67        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5356 
       14.33        11.44        26.63        28.77        13.05         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        5.69        12.39         8.28        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 
       11.57        12.49         8.52        13.58         9.01         6.81 
TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        7.50         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        4.41         3.19         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        29.46        33.80        10.42         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6229 
       32.35        32.88        34.75        32.35         4.21        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       33.07        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       26.24        58.42        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       39.12        47.34        40.90         3.06        24.95        29.23 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 
       29.85        29.52        30.54         7.10         5.92        35.41 
TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       29.92        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
       33.11         7.07        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
       90.08         2.14         9.70        20.52         4.70        21.86 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       11.24       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 
       30.05         6.08        53.92        65.82        10.98         7.13 
TCGA-CV-6959 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        8.38        64.80       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       36.00        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
       47.97         2.10        36.13        18.41        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 
       89.33         9.67         0.46        22.85        25.02         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09       100.54        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25        10.68         8.22         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 
        4.18        37.78        34.78        16.96        15.68        14.04 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 
       11.84         9.83         1.15         0.99         0.07         0.16 
TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         5.26         4.01         3.72 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.99               0.07 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            126.12             210.94 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            14.055             13.840 
[1] "1.0 - 126.1 (14.1)" "0.1 - 210.9 (13.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D59V2, continuous
D59V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      6   22
  10Q LOSS WILD-TYPE   75  183
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE                6                 75
  MALE                 22                183
D59V4, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1                1                 18
  T2               11                 68
  T3                6                 70
  T4                9                 93
D59V5, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0               13                 99
  N1                3                 41
  N2               10                 95
  N3                0                  4
D59V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     28    0
  10Q LOSS WILD-TYPE  254    3
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0               28                254
  M1                0                  3
D59V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      8   20
  10Q LOSS WILD-TYPE   68  190
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 8                 68
  YES               20                190
D59V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      5   23
  10Q LOSS WILD-TYPE   42  216
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 5                 42
  YES               23                216

Clustering(60) Variable = 11p loss mutation analysis
D60V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    25  27
  11P LOSS WILD-TYPE 140  92
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                52                232 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                27                 92 
$`11P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5559 TCGA-BA-6871 
       15.16        13.64        16.08         9.07        57.44         2.07 
TCGA-BA-6872 TCGA-BA-7269 TCGA-BB-4227 TCGA-CN-4735 TCGA-CN-5356 TCGA-CN-5363 
       12.99         7.76         4.37        12.13         9.50         8.28 
TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6988 TCGA-CN-6992 
       11.54        11.57         9.01         7.50         1.38         2.73 
TCGA-CN-6995 TCGA-CQ-5332 TCGA-CQ-6221 TCGA-CQ-6228 TCGA-CR-5243 TCGA-CR-5247 
        3.68        10.42        32.88        14.96        84.23        11.77 
TCGA-CR-5248 TCGA-CR-6472 TCGA-CR-7369 TCGA-CR-7385 TCGA-CR-7399 TCGA-CV-5977 
       54.64        34.52        35.84        32.78         5.92        33.11 
TCGA-CV-6441 TCGA-CV-6936 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6948 
        5.88         5.46        26.43       126.08        12.03        42.35 
TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7253 
        4.14       111.12        12.66         5.23         1.84        11.87 
TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7423 TCGA-CV-7430 TCGA-CX-7082 
       22.85        25.02         0.07       100.54        16.27        10.39 
TCGA-DQ-5624 TCGA-DQ-5629 TCGA-F7-7848 TCGA-HD-7753 
       37.78        16.96         1.15         0.16 

$`11P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 
        9.30         8.15         6.25        27.78        57.90         6.12 
TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 
        5.88         7.96        53.75         5.00         8.02        14.79 
TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4228 
        3.72         6.12        95.05         9.04         4.60        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
        6.31        13.55        10.19         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 
        5.46        11.28        12.59        17.16        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5369 
        5.69        12.39        28.47        16.21        11.84        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        8.52        13.58         6.81         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 
        6.18         7.36         5.82         3.91         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       27.65        29.46        33.80         4.21        28.60        32.35 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 
       34.75        32.35        13.25         4.21        26.76        33.07 
TCGA-CQ-7068 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       22.78        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7370 
        9.27        47.18        39.12        47.34        40.90         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.06        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 
       34.06        19.92        26.17        17.13        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.54         7.10         5.13        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       17.06        13.35        17.75        57.07        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 
       43.23        40.96        13.32        24.43        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6943 
        9.70        20.52         4.70        21.86        11.24        19.79 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38        28.31         2.50        64.80       126.12 
TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
       18.81         7.99         9.01        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
       47.97         2.10        36.13        18.41        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 
       89.33         9.67         0.46        25.94        34.09        14.86 
TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 
       56.48       156.49        54.90         3.48        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 
        7.13       142.49        16.60         6.38        21.99        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5625 TCGA-DQ-5630 
        2.53         5.00         5.03         4.18        34.78        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-H7-7774 TCGA-HD-7229 
       18.02        14.04        11.84         9.83         0.99         0.07 
TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         5.26         4.01         3.72 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.07               0.07 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            126.08             210.94 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             11.95              15.37 
[1] "0.1 - 126.1 (11.9)" "0.1 - 210.9 (15.4)"
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D60V2, continuous
D60V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     11   41
  11P LOSS WILD-TYPE   70  164
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               11                 70
  MALE                 41                164
D60V4, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1                4                 15
  T2               12                 67
  T3               15                 61
  T4               20                 82
D60V5, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0               13                 99
  N1                6                 38
  N2               27                 78
  N3                2                  2
D60V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     50    2
  11P LOSS WILD-TYPE  232    1
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0               50                232
  M1                2                  1
D60V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     11   41
  11P LOSS WILD-TYPE   65  169
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                11                 65
  YES               41                169
D60V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     10   42
  11P LOSS WILD-TYPE   37  197
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                10                 37
  YES               42                197

Clustering(61) Variable = 11q loss mutation analysis
D61V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    45  31
  11Q LOSS WILD-TYPE 120  88
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                76                208 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                31                 88 
$`11Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5153 
       15.16        13.64        16.08         9.07         8.15        57.90 
TCGA-BA-5555 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-7269 
        6.12        57.44         5.00         2.07        12.99         7.76 
TCGA-BB-4227 TCGA-CN-4727 TCGA-CN-4735 TCGA-CN-4741 TCGA-CN-5360 TCGA-CN-5363 
        4.37         6.38        12.13        28.77        28.47         8.28 
TCGA-CN-5365 TCGA-CN-5367 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6013 TCGA-CN-6024 
       11.54        11.57         9.01         7.50         5.06         7.36 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CQ-6221 TCGA-CQ-6228 TCGA-CR-5243 TCGA-CR-5247 
        2.73         3.68        32.88        14.96        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6482 
       54.64        37.87        26.24        58.42        50.01        11.34 
TCGA-CR-6487 TCGA-CR-7369 TCGA-CR-7380 TCGA-CR-7385 TCGA-CR-7399 TCGA-CV-5430 
        7.66        35.84        19.92        32.78         5.92       135.29 
TCGA-CV-5432 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5443 TCGA-CV-5970 TCGA-CV-5977 
      129.21        89.82        87.55        84.39        13.35        33.11 
TCGA-CV-6433 TCGA-CV-6441 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6939 TCGA-CV-6940 
       13.32         5.88         9.70         5.46        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6945 TCGA-CV-6961 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
      126.08        12.03         2.50       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7102 TCGA-CV-7247 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7421 
       12.66         1.84        18.97         0.46        22.85         0.07 
TCGA-CV-7423 TCGA-CV-7428 TCGA-CX-7082 TCGA-CX-7219 TCGA-D6-6825 TCGA-DQ-5624 
      100.54        54.90        10.39        27.22         5.00        37.78 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-F7-7848 TCGA-HD-7753 
       14.04        11.84         1.15         0.16 

$`11Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        9.30         6.25        27.78         5.88         7.96        53.75 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        8.02        14.79         3.72         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        4.60        18.31         6.31        13.55        10.19         4.67 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 
       10.68         5.46        11.28        12.59        17.16        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4742 TCGA-CN-5355 
        7.89        14.33        11.44        26.63        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5369 
        9.50         5.69        12.39        16.21        11.84        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6016 TCGA-CN-6017 
        8.52        13.58         6.81         4.70         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        1.38         5.82         3.91         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        10.42         4.21        28.60        32.35 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 
       34.75        32.35        13.25         4.21        26.76        33.07 
TCGA-CQ-7068 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       22.78        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 
        6.02        11.90        10.22        11.64        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 
        9.17        34.06        26.17        17.13        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.54         7.10         5.13        35.41        29.92        48.36 
TCGA-CV-5431 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5442 
       17.16       108.33        47.28        19.20        17.95        76.47 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5978 
       64.73        17.06        17.75        57.07        48.59         7.07 
TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6937 
       43.23        40.96        24.43        90.08         2.14        20.52 
TCGA-CV-6938 TCGA-CV-6941 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
        4.70        11.24        19.79        42.35        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
        6.08        53.92        65.82        10.98         7.13         8.38 
TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
       28.31         4.14        64.80         7.99         9.01         5.23 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
       52.31        12.89        21.76        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7248 
       56.68         4.73        47.47        36.00        26.20        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 
       95.34         4.96        11.87        47.97         2.10        36.13 
TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7416 
       18.41        35.54       210.94        89.33         9.67        25.02 
TCGA-CV-7418 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 
       25.94        34.09        14.86        56.48       156.49         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 
        6.38        21.99        10.55         7.76        13.25        10.68 
TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5625 
        8.22         7.82         2.53         5.03         4.18        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-H7-7774 TCGA-HD-7229 
       16.96        15.68        18.02         9.83         0.99         0.07 
TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         5.26         4.01         3.72 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.07               0.07 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            135.29             210.94 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            13.335             14.825 
[1] "0.1 - 135.3 (13.3)" "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D61V2, continuous
D61V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     11   65
  11Q LOSS WILD-TYPE   70  140
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE               11                 70
  MALE                 65                140
D61V4, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1                6                 13
  T2               21                 58
  T3               21                 55
  T4               27                 75
D61V5, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0               24                 88
  N1               10                 34
  N2               36                 69
  N3                3                  1
D61V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     74    2
  11Q LOSS WILD-TYPE  208    1
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0               74                208
  M1                2                  1
D61V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     23   53
  11Q LOSS WILD-TYPE   53  157
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                23                 53
  YES               53                157
D61V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     18   58
  11Q LOSS WILD-TYPE   29  181
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                18                 29
  YES               58                181

Clustering(62) Variable = 12p loss mutation analysis
D62V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED     6   8
  12P LOSS WILD-TYPE 159 111
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                14                270 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 8                111 
$`12P LOSS MUTATED`
TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 
       16.08         8.15         5.00        14.79        12.99         7.76 
TCGA-CN-5365 TCGA-CR-7389 TCGA-CV-6441 TCGA-CV-6936 TCGA-CV-7090 TCGA-CV-7100 
       11.54        12.89         5.88         5.46       126.12         9.01 
TCGA-CX-7219 TCGA-DQ-5631 
       27.22        18.02 

$`12P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        13.64         9.07         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       57.90         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
        8.02         2.07         3.72         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
        4.60         4.37        18.31         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5366 TCGA-CN-5367 
       12.39        28.47         8.28        16.21        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 
       12.49         8.52        13.58         9.01         6.81         7.50 
TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 
        4.70         5.06         6.61         5.23         1.48         4.41 
TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 
        3.19         9.07         6.61         6.18         7.36         1.38 
TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 
        5.82         2.73         3.91         3.68         3.75         3.29 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        29.46        33.80        10.42         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
       14.96        26.76        33.07        22.78        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       35.84         3.42         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       32.78        47.01        27.02        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
       57.07        48.59        33.11         7.07        43.23        40.96 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6937 
       13.32        24.43        90.08         2.14         9.70        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
        4.14        64.80       111.12        18.81        12.66         7.99 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
       47.97         2.10        36.13        18.41        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
        7.76        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.00         5.03         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 
       15.68        14.04        11.84         9.83         1.15         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.07         0.16         0.82         5.26         4.01         3.72 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              5.00               0.07 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            126.12             210.94 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            12.215             14.595 
[1] "5.0 - 126.1 (12.2)" "0.1 - 210.9 (14.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D62V2, continuous
D62V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      2   12
  12P LOSS WILD-TYPE   79  193
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE                2                 79
  MALE                 12                193
D62V4, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1                0                 19
  T2                5                 74
  T3                6                 70
  T4                3                 99
D62V5, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0                3                109
  N1                2                 42
  N2                7                 98
  N3                2                  2
D62V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     12    2
  12P LOSS WILD-TYPE  270    1
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0               12                270
  M1                2                  1
D62V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      6    8
  12P LOSS WILD-TYPE   70  202
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 6                 70
  YES                8                202
D62V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      4   10
  12P LOSS WILD-TYPE   43  229
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 4                 43
  YES               10                229

Clustering(63) Variable = 12q loss mutation analysis
D63V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED     7   6
  12Q LOSS WILD-TYPE 158 113
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                13                271 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 6                113 
$`12Q LOSS MUTATED`
TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-7269 TCGA-CN-4726 TCGA-CN-6024 TCGA-CR-7390 
        5.00        14.79         7.76         4.67         7.36        29.82 
TCGA-CV-5430 TCGA-CV-6441 TCGA-CV-6935 TCGA-CV-6948 TCGA-CV-6960 TCGA-CV-7090 
      135.29         5.88         9.70        42.35        28.31       126.12 
TCGA-CX-7219 
       27.22 

$`12Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         8.02         2.07        12.99         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55        10.19         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        6.18         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5431 
        5.13         5.92        35.41        29.92        48.36        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 
      129.21       108.33        47.28        19.20        17.95        89.82 
TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       87.55        76.47        84.39        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 
       40.96        13.32        24.43        90.08         2.14         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 
       20.52         4.70        21.86        26.43        11.24       126.08 
TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       19.79        12.03        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 
       65.82        10.98         7.13         8.38         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
       64.80       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
       47.97         2.10        36.13        18.41        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
        7.76        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.00         5.03         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 
       15.68        18.02        14.04        11.84         9.83         1.15 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         0.07         0.16         0.82         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              4.67               0.07 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            135.29             210.94 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             14.79              13.64 
[1] "4.7 - 135.3 (14.8)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
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        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D63V2, continuous
D63V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      2   11
  12Q LOSS WILD-TYPE   79  194
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE                2                 79
  MALE                 11                194
D63V4, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1                0                 19
  T2                2                 77
  T3                6                 70
  T4                5                 97
D63V5, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0                4                108
  N1                1                 43
  N2                7                 98
  N3                1                  3
D63V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED     12    1
  12Q LOSS WILD-TYPE  270    2
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0               12                270
  M1                1                  2
D63V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      4    9
  12Q LOSS WILD-TYPE   72  201
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 4                 72
  YES                9                201
D63V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      2   11
  12Q LOSS WILD-TYPE   45  228
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 2                 45
  YES               11                228

Clustering(64) Variable = 13q loss mutation analysis
D64V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED    38  21
  13Q LOSS WILD-TYPE 127  98
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                59                225 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                21                 98 
$`13Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4078 TCGA-BA-5555 TCGA-BA-6869 TCGA-BA-6871 TCGA-BA-7269 
       15.16         9.07         6.12         8.02         2.07         7.76 
TCGA-BB-4224 TCGA-BB-4227 TCGA-CN-4725 TCGA-CN-4739 TCGA-CN-5360 TCGA-CN-5363 
        9.04         4.37        10.19        11.44        28.47         8.28 
TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6021 TCGA-CN-6024 TCGA-CN-6988 TCGA-CQ-5323 
        9.01         7.50         9.07         7.36         1.38        48.16 
TCGA-CQ-5330 TCGA-CQ-6228 TCGA-CQ-7065 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-6467 
       29.46        14.96        33.07        84.23        54.64        58.42 
TCGA-CR-6472 TCGA-CR-6487 TCGA-CR-7364 TCGA-CR-7374 TCGA-CR-7385 TCGA-CR-7399 
       34.52         7.66        47.18         0.99        32.78         5.92 
TCGA-CR-7402 TCGA-CV-5434 TCGA-CV-5441 TCGA-CV-6941 TCGA-CV-6948 TCGA-CV-6950 
       29.92       108.33        87.55        11.24        42.35        15.06 
TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7091 TCGA-CV-7099 TCGA-CV-7100 
       65.82        28.31         4.14       111.12         7.99         9.01 
TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7263 TCGA-CV-7418 
       52.31        21.76        36.00        26.20        18.41        25.94 
TCGA-CV-7421 TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7086 TCGA-CX-7219 
        0.07       142.49        21.99        10.39         7.76        27.22 
TCGA-D6-6825 TCGA-D6-6827 TCGA-DQ-7588 TCGA-DQ-7592 TCGA-F7-7848 
        5.00         4.18        14.04         9.83         1.15 

$`13Q LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
        9.30        13.64        16.08         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
       57.90         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 
       14.79        12.99         3.72         6.12        95.05         4.60 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
       18.31         6.31        13.55         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
        7.89        14.33        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 
        9.50         5.69        12.39        16.21        11.54        11.84 
TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-6010 TCGA-CN-6012 
       11.57        12.49         8.52        13.58         6.81         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        6.61         6.18         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.75         3.29         1.51        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 
       38.89        27.65        33.80        10.42         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 
       32.35        32.88        34.75        32.35        13.25         4.21 
TCGA-CQ-6229 TCGA-CQ-7068 TCGA-CR-5247 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6470 
       26.76        22.78        11.77        37.87        26.24        50.01 
TCGA-CR-6471 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       39.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       10.22        11.34        11.64        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
        3.06        24.95        29.23        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       19.92        26.17        17.13        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        7.10         5.13        35.41        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5442 
      129.21        47.28        19.20        17.95        89.82        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       24.43         5.88        90.08         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        26.43       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 
       12.03        30.05         6.08        53.92        10.98         7.13 
TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 
        8.38         2.50        64.80       126.12        18.81        12.66 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
        5.23         1.84        12.89        71.21        10.75       114.94 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       56.68         4.73        47.47        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 
        4.96        11.87        47.97         2.10        36.13        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 
        3.48        16.27        84.49        19.73         7.13        16.60 
TCGA-CV-7438 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        6.38        10.55        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        2.53         5.03        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7591 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       18.02        11.84         0.99         0.07         0.16         0.82 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.07               0.07 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            142.49             210.94 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             14.04              13.64 
[1] "0.1 - 142.5 (14.0)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
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        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D64V2, continuous
D64V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     13   46
  13Q LOSS WILD-TYPE   68  159
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               13                 68
  MALE                 46                159
D64V4, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1                5                 14
  T2               17                 62
  T3               16                 60
  T4               19                 83
D64V5, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0               23                 89
  N1                6                 38
  N2               24                 81
  N3                1                  3
D64V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     58    1
  13Q LOSS WILD-TYPE  224    2
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0               58                224
  M1                1                  2
D64V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     15   44
  13Q LOSS WILD-TYPE   61  166
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                15                 61
  YES               44                166
D64V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      8   51
  13Q LOSS WILD-TYPE   39  188
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                 8                 39
  YES               51                188

Clustering(65) Variable = 14q loss mutation analysis
D65V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED     8   6
  14Q LOSS WILD-TYPE 157 113
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                14                270 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 6                113 
$`14Q LOSS MUTATED`
TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-6870 TCGA-BA-6871 TCGA-CN-6992 TCGA-CQ-6221 
        9.07        57.90        14.79         2.07         2.73        32.88 
TCGA-CR-5250 TCGA-CR-6470 TCGA-CR-6472 TCGA-CR-7398 TCGA-CV-6935 TCGA-CV-6939 
       26.24        50.01        34.52         5.13         9.70        21.86 
TCGA-DQ-5631 TCGA-F7-7848 
       18.02         1.15 

$`14Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 
       15.16         9.30        13.64        16.08         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
        5.00         8.02        12.99         3.72         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 
       95.05         9.04         4.60         4.37        18.31         6.31 
TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
       13.55        10.19         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 
        6.18         7.36         1.38         5.82         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
        4.21        28.60        32.35        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 
        4.21        14.96        26.76        33.07        22.78        84.23 
TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-6467 TCGA-CR-6471 TCGA-CR-6473 
       11.77        54.64        37.87        58.42        39.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 
       11.64         7.66        12.46        11.51        15.75         9.27 
TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
       47.18        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 
        3.06        24.95        29.23         0.99        31.96         9.17 
TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 
       34.06        19.92        26.17        17.13        32.78        47.01 
TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 
       27.02        12.89        29.82        30.02        31.10        29.85 
TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       29.52        30.54         7.10         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        5.88        90.08         2.14         5.46        20.52         4.70 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
       47.97         2.10        36.13        18.41        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-H7-7774 
       16.96        15.68        14.04        11.84         9.83         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.07         0.16         0.82         5.26         4.01         3.72 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              1.15               0.07 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             57.90             210.94 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            16.405             13.610 
[1] "1.1 - 57.9 (16.4)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D65V2, continuous
D65V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      2   12
  14Q LOSS WILD-TYPE   79  193
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE                2                 79
  MALE                 12                193
D65V4, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1                0                 19
  T2                6                 73
  T3                6                 70
  T4                1                101
D65V5, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0                3                109
  N1                2                 42
  N2                7                 98
  N3                0                  4
D65V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     12    2
  14Q LOSS WILD-TYPE  270    1
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0               12                270
  M1                2                  1
D65V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      5    9
  14Q LOSS WILD-TYPE   71  201
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 5                 71
  YES                9                201
D65V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      3   11
  14Q LOSS WILD-TYPE   44  228
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 3                 44
  YES               11                228

Clustering(66) Variable = 15q loss mutation analysis
D66V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    13  12
  15Q LOSS WILD-TYPE 152 107
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                25                259 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                12                107 
$`15Q LOSS MUTATED`
TCGA-BA-5153 TCGA-BA-6868 TCGA-BA-7269 TCGA-CN-4725 TCGA-CN-6997 TCGA-CN-6998 
       57.90         5.00         7.76        10.19         3.29         1.51 
TCGA-CR-5243 TCGA-CR-7373 TCGA-CR-7402 TCGA-CV-5435 TCGA-CV-5970 TCGA-CV-5979 
       84.23        29.23        29.92        47.28        13.35        43.23 
TCGA-CV-6441 TCGA-CV-6948 TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-7104 TCGA-CV-7242 
        5.88        42.35        65.82        28.31        12.89        36.00 
TCGA-CV-7407 TCGA-CV-7432 TCGA-CV-7438 TCGA-CX-7219 TCGA-D6-6517 TCGA-DQ-5631 
       35.54        84.49         6.38        27.22         8.22        18.02 
TCGA-DQ-7592 
        9.83 

$`15Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
        6.25        27.78         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 
       57.44         8.02        14.79         2.07        12.99         3.72 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55         4.67         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 
       11.28        12.59        17.16        12.13        12.99         7.89 
TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 
       14.33        11.44        26.63        28.77        13.05         9.17 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 
        9.50         5.69        12.39        28.47         8.28        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
        6.18         7.36         1.38         5.82         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.68         3.75        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 
       38.89        27.65        29.46        33.80        10.42         4.21 
TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 
       28.60        32.35        32.88        34.75        32.35        13.25 
TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5247 
        4.21        14.96        26.76        33.07        22.78        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 
       34.52        36.99        18.51        16.90         6.02        11.90 
TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 
       10.22        11.34        11.64         7.66        12.46        11.51 
TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 
       15.75         9.27        47.18        39.12        47.34        40.90 
TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7374 TCGA-CR-7376 
       35.84         3.42         3.06        24.95         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       35.41        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       64.73        17.06        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 
        7.07        40.96        13.32        24.43        90.08         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 
       11.24       126.08        19.79        12.03        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 
        6.08        53.92        10.98         7.13         8.38         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 
        7.99         9.01         5.23         1.84        52.31        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7410 TCGA-CV-7411 
       47.97         2.10        36.13        18.41       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
        3.48        16.27        19.73         7.13       142.49        16.60 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-D6-6515 TCGA-D6-6516 
       21.99        10.39        10.55         7.76        13.25        10.68 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 
        7.82         2.53         5.00         5.03         4.18        37.78 
TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-F7-7848 
       34.78        16.96        15.68        14.04        11.84         1.15 
TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 
        0.99         0.07         0.16         0.82         5.26         4.01 
TCGA-IQ-7632 
        3.72 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              1.51               0.07 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             84.49             210.94 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             27.22              13.58 
[1] "1.5 - 84.5 (27.2)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
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"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D66V2, continuous
D66V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      5   20
  15Q LOSS WILD-TYPE   76  185
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE                5                 76
  MALE                 20                185
D66V4, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1                1                 18
  T2                7                 72
  T3               10                 66
  T4                7                 95
D66V5, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0                8                104
  N1                4                 40
  N2               10                 95
  N3                1                  3
D66V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     25    0
  15Q LOSS WILD-TYPE  257    3
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0               25                257
  M1                0                  3
D66V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      8   17
  15Q LOSS WILD-TYPE   68  193
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 8                 68
  YES               17                193
D66V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      5   20
  15Q LOSS WILD-TYPE   42  219
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 5                 42
  YES               20                219

Clustering(67) Variable = 16p loss mutation analysis
D67V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED     8   8
  16P LOSS WILD-TYPE 157 111
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                16                268 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 8                111 
$`16P LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-6871 TCGA-BA-7269 TCGA-CR-6473 
       13.64         9.07        57.90         2.07         7.76        36.99 
TCGA-CR-7370 TCGA-CR-7374 TCGA-CV-5436 TCGA-CV-6441 TCGA-CV-7102 TCGA-CV-7418 
        3.42         0.99        19.20         5.88         1.84        25.94 
TCGA-CV-7424 TCGA-D6-6827 TCGA-DQ-7592 TCGA-HD-7753 
       14.86         4.18         9.83         0.16 

$`16P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        16.08         8.15         6.25        27.78 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 
        6.12         5.88         7.96        53.75        57.44         5.00 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
        8.02        14.79        12.99         3.72         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 
        9.04         4.60         4.37        18.31         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 
        6.81         7.50         4.70         5.06         6.61         5.23 
TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 
        1.48         4.41         3.19         9.07         6.61         6.18 
TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 
        7.36         1.38         5.82         2.73         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 
        4.21        28.60        32.35        32.88        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       13.25         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        34.52        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 
       40.90        35.84         3.06        24.95        29.23        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
      108.33        47.28        17.95        89.82        87.55        76.47 
TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 
       84.39        64.73        17.06        13.35        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 
        4.14        64.80       126.12       111.12        18.81        12.66 
TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        7.99         9.01         5.23        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
        0.07        34.09       100.54        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.00         5.03        37.78        34.78        16.96        15.68 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 
       18.02        14.04        11.84         1.15         0.99         0.07 
TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         5.26         4.01         3.72 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.16               0.07 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             57.90             210.94 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             8.415             14.875 
[1] "0.2 - 57.9 (8.4)"   "0.1 - 210.9 (14.9)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "2.2"
D67V2, continuous
D67V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      4   12
  16P LOSS WILD-TYPE   77  193
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE                4                 77
  MALE                 12                193
D67V4, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1                1                 18
  T2                6                 73
  T3                6                 70
  T4                2                100
D67V5, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0                5                107
  N1                2                 42
  N2                8                 97
  N3                0                  4
D67V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     15    1
  16P LOSS WILD-TYPE  267    2
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0               15                267
  M1                1                  2
D67V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      4   12
  16P LOSS WILD-TYPE   72  198
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 4                 72
  YES               12                198
D67V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      1   15
  16P LOSS WILD-TYPE   46  224
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 1                 46
  YES               15                224

Clustering(68) Variable = 16q loss mutation analysis
D68V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    15   8
  16Q LOSS WILD-TYPE 150 111
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                23                261 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 8                111 
$`16Q LOSS MUTATED`
TCGA-BA-4076 TCGA-BA-4078 TCGA-BA-5153 TCGA-BA-5559 TCGA-BB-4225 TCGA-BB-4228 
       13.64         9.07        57.90        57.44         4.60        18.31 
TCGA-CN-5356 TCGA-CN-5360 TCGA-CN-6021 TCGA-CR-5243 TCGA-CR-6467 TCGA-CR-6473 
        9.50        28.47         9.07        84.23        58.42        36.99 
TCGA-CR-7370 TCGA-CR-7398 TCGA-CR-7402 TCGA-CV-5443 TCGA-CV-5966 TCGA-CV-7414 
        3.42         5.13        29.92        84.39        17.06         0.46 
TCGA-CV-7418 TCGA-CV-7424 TCGA-D6-6827 TCGA-DQ-7591 TCGA-DQ-7592 
       25.94        14.86         4.18        11.84         9.83 

$`16Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4077 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       15.16         9.30        16.08         8.15         6.25        27.78 
TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6869 
        6.12         5.88         7.96        53.75         5.00         8.02 
TCGA-BA-6870 TCGA-BA-6871 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 
       14.79         2.07        12.99         3.72         7.76         6.12 
TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4227 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
       95.05         9.04         4.37         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       17.16        12.13        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5358 TCGA-CN-5359 
       26.63        28.77        13.05         9.17         5.69        12.39 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       33.80        10.42         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       33.07        22.78        11.77        54.64        37.87        26.24 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 
       50.01        39.52        34.52        18.51        16.90         6.02 
TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 
       11.90        10.22        11.34        11.64         7.66        12.46 
TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 
       11.51        15.75         9.27        47.18        39.12        47.34 
TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 
       40.90        35.84         3.06        24.95        29.23         0.99 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7399 
       31.10        29.85        29.52        30.54         7.10         5.92 
TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       35.41        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 
       47.28        19.20        17.95        89.82        87.55        76.47 
TCGA-CV-5444 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       64.73        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 
        7.07        43.23        40.96        13.32        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 
      210.94        89.33         9.67        22.85        25.02         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
       34.09       100.54        56.48       156.49        54.90         3.48 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
       16.27        84.49        19.73         7.13       142.49        16.60 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
        6.38        21.99        10.39        10.55         7.76        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        5.03        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 
       14.04         1.15         0.99         0.07         0.16         0.82 
TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        5.26         4.01         3.72 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.46               0.07 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             84.39             210.94 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             14.86              13.58 
[1] "0.5 - 84.4 (14.9)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D68V2, continuous
D68V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      5   18
  16Q LOSS WILD-TYPE   76  187
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE                5                 76
  MALE                 18                187
D68V4, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1                0                 19
  T2                8                 71
  T3                7                 69
  T4                6                 96
D68V5, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0                8                104
  N1                3                 41
  N2               10                 95
  N3                0                  4
D68V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     23    0
  16Q LOSS WILD-TYPE  259    3
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0               23                259
  M1                0                  3
D68V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      5   18
  16Q LOSS WILD-TYPE   71  192
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 5                 71
  YES               18                192
D68V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      2   21
  16Q LOSS WILD-TYPE   45  218
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 2                 45
  YES               21                218

Clustering(69) Variable = 17p loss mutation analysis
D69V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED    21  19
  17P LOSS WILD-TYPE 144 100
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                40                244 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                19                100 
$`17P LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-6868 TCGA-BA-6871 TCGA-CN-4725 TCGA-CN-4730 TCGA-CN-4735 
        8.15         5.00         2.07        10.19        11.28        12.13 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-6011 TCGA-CQ-6220 TCGA-CQ-6223 TCGA-CQ-6225 
       28.47        16.21         7.50        32.35        34.75        13.25 
TCGA-CQ-6228 TCGA-CR-6472 TCGA-CR-7364 TCGA-CR-7371 TCGA-CR-7385 TCGA-CR-7390 
       14.96        34.52        47.18         3.06        32.78        29.82 
TCGA-CR-7398 TCGA-CV-5439 TCGA-CV-5970 TCGA-CV-6441 TCGA-CV-6953 TCGA-CV-6961 
        5.13        17.95        13.35         5.88        53.92         2.50 
TCGA-CV-7099 TCGA-CV-7102 TCGA-CV-7180 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7263 
        7.99         1.84        10.75        26.20        18.97        18.41 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7428 TCGA-CV-7435 TCGA-CV-7440 TCGA-CX-7086 
      100.54        14.86        54.90       142.49        21.99         7.76 
TCGA-D6-6823 TCGA-D6-6827 TCGA-DQ-5629 TCGA-DQ-7591 
        7.82         4.18        16.96        11.84 

$`17P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        16.08         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         8.02        14.79        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55         4.67         6.38        10.68         5.46 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 
       12.59        17.16        12.99         7.89        14.33        11.44 
TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 
       26.63        28.77        13.05         9.17         9.50         5.69 
TCGA-CN-5359 TCGA-CN-5363 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       12.39         8.28        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 
        8.52        13.58         9.01         6.81         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 
       33.80        10.42         4.21        28.60        32.88        32.35 
TCGA-CQ-6227 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 
        4.21        26.76        33.07        22.78        84.23        11.77 
TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 
       54.64        37.87        26.24        58.42        50.01        39.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       19.92        26.17        17.13        47.01        27.02        12.89 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 
        5.92        35.41        29.92        48.36       135.29        17.16 
TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5440 TCGA-CV-5441 
      129.21       108.33        47.28        19.20        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5973 
       76.47        84.39        64.73        17.06        17.75        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 
       12.03        42.35        15.06        30.05         6.08        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 
       10.98         7.13         8.38        28.31         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7100 TCGA-CV-7101 
      126.12       111.12        18.81        12.66         9.01         5.23 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 
       52.31        12.89        21.76        71.21       114.94        56.68 
TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
        4.73        47.47        36.00        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7407 TCGA-CV-7410 
       11.87        47.97         2.10        36.13        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
       89.33         9.67         0.46        22.85        25.02        25.94 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 
        0.07        34.09        56.48       156.49         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CX-7082 
       84.49        19.73         7.13        16.60         6.38        10.39 
TCGA-CX-7085 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6824 
       10.55        27.22        13.25        10.68         8.22         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 
        5.00         5.03        37.78        34.78        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 
       14.04         9.83         1.15         0.99         0.07         0.16 
TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         5.26         4.01         3.72 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              1.84               0.07 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            142.49             210.94 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            14.105             13.840 
[1] "1.8 - 142.5 (14.1)" "0.1 - 210.9 (13.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D69V2, continuous
D69V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      8   32
  17P LOSS WILD-TYPE   73  173
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE                8                 73
  MALE                 32                173
D69V4, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1                2                 17
  T2               11                 68
  T3               16                 60
  T4               10                 92
D69V5, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0               18                 94
  N1                4                 40
  N2               13                 92
  N3                1                  3
D69V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     39    1
  17P LOSS WILD-TYPE  243    2
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0               39                243
  M1                1                  2
D69V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     11   29
  17P LOSS WILD-TYPE   65  181
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                11                 65
  YES               29                181
D69V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      8   32
  17P LOSS WILD-TYPE   39  207
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                 8                 39
  YES               32                207

Clustering(70) Variable = 17q loss mutation analysis
D70V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED     4   4
  17Q LOSS WILD-TYPE 161 115
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 8                276 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 4                115 
$`17Q LOSS MUTATED`
TCGA-BA-6868 TCGA-BA-6871 TCGA-CN-6011 TCGA-CQ-6220 TCGA-CQ-6225 TCGA-CV-6441 
        5.00         2.07         7.50        32.35        13.25         5.88 
TCGA-CV-7091 TCGA-DQ-5631 
      111.12        18.02 

$`17Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       18.31         6.31        13.55        10.19         4.67         6.38 
TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 
       10.68         5.46        11.28        12.59        17.16        12.13 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 
        8.52        13.58         9.01         6.81         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        3.91         3.68         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 
       33.80        10.42         4.21        28.60        32.88        34.75 
TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 
       32.35         4.21        14.96        26.76        33.07        22.78 
TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 
       84.23        11.77        54.64        37.87        26.24        58.42 
TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 
       50.01        39.52        34.52        36.99        18.51        16.90 
TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 
        6.02        11.90        10.22        11.34        11.64         7.66 
TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 
       12.46        11.51        15.75         9.27        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 
       29.23         0.99        31.96         9.17        34.06        19.92 
TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 
       26.17        17.13        32.78        47.01        27.02        12.89 
TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 
       29.82        30.02        31.10        29.85        29.52        30.54 
TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
        7.10         5.13         5.92        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
        7.07        43.23        40.96        13.32        24.43        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 
      126.12        18.81        12.66         7.99         9.01         5.23 
TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        1.84        52.31        12.89        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 
      114.94        56.68         4.73        47.47        36.00        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
        2.10        36.13        18.41        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 
        9.67         0.46        22.85        25.02        25.94         0.07 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 
       27.22        13.25        10.68         8.22         7.82         2.53 
TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 
        5.00         5.03         4.18        37.78        34.78        16.96 
TCGA-DQ-5630 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 
       15.68        14.04        11.84         9.83         1.15         0.99 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.07         0.16         0.82         5.26         4.01         3.72 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              2.07               0.07 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            111.12             210.94 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            10.375             14.185 
[1] "2.1 - 111.1 (10.4)" "0.1 - 210.9 (14.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D70V2, continuous
D70V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      0    8
  17Q LOSS WILD-TYPE   81  197
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                0                 81
  MALE                  8                197
D70V4, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1                1                 18
  T2                0                 79
  T3                6                 70
  T4                1                101
D70V5, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0                5                107
  N1                0                 44
  N2                2                103
  N3                1                  3
D70V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      7    1
  17Q LOSS WILD-TYPE  275    2
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0                7                275
  M1                1                  2
D70V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      3    5
  17Q LOSS WILD-TYPE   73  205
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 3                 73
  YES                5                205
D70V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      2    6
  17Q LOSS WILD-TYPE   45  233
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 2                 45
  YES                6                233

Clustering(71) Variable = 18p loss mutation analysis
D71V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    23  14
  18P LOSS WILD-TYPE 142 105
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                37                247 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                14                105 
$`18P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 
       15.16         9.30        53.75         5.00        14.79         2.07 
TCGA-CN-4727 TCGA-CN-4735 TCGA-CN-5367 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 
        6.38        12.13        11.57         3.91         3.68         3.75 
TCGA-CN-6997 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-7065 TCGA-CR-7367 TCGA-CR-7374 
        3.29        34.75        32.35        33.07        47.34         0.99 
TCGA-CV-5443 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6940 TCGA-CV-6948 TCGA-CV-6953 
       84.39        40.96        90.08        26.43        42.35        53.92 
TCGA-CV-6961 TCGA-CV-7091 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7245 TCGA-CV-7423 
        2.50       111.12        52.31        12.89        26.20       100.54 
TCGA-CV-7429 TCGA-CX-7219 TCGA-D6-6516 TCGA-DQ-5629 TCGA-F7-7848 TCGA-HD-7229 
        3.48        27.22        10.68        16.96         1.15         0.07 
TCGA-IQ-7630 
        5.26 

$`18P LOSS WILD-TYPE`
TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       13.64        16.08         9.07         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6869 
       57.90         6.12         5.88         7.96        57.44         8.02 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
       12.99         3.72         7.76         6.12        95.05         9.04 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
        4.60         4.37        18.31         6.31        13.55        10.19 
TCGA-CN-4726 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        4.67        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 
       12.99         7.89        14.33        11.44        26.63        28.77 
TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 
       13.05         9.17         9.50         5.69        12.39        28.47 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5369 TCGA-CN-5370 
        8.28        16.21        11.54        11.84        12.49         8.52 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 
        6.61         6.18         7.36         1.38         5.82         2.73 
TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 
        1.51        48.16        39.68        21.50         2.93        38.89 
TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 
       27.65        29.46        33.80        10.42         4.21        28.60 
TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       32.35        32.88        13.25         4.21        14.96        26.76 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
        7.66        12.46        11.51        15.75         9.27        47.18 
TCGA-CR-7365 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       39.12        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
       29.23        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 
        5.13         5.92        35.41        29.92        48.36       135.29 
TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 
       17.16       129.21       108.33        47.28        19.20        17.95 
TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 
       89.82        87.55        76.47        64.73        17.06        13.35 
TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 
       17.75        57.07        48.59        33.11         7.07        43.23 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 
       13.32        24.43         5.88         2.14         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6954 TCGA-CV-6955 
       12.03        15.06        30.05         6.08        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 
        7.13         8.38        28.31         4.14        64.80       126.12 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
       18.81        12.66         7.99         9.01         5.23         1.84 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       47.47        36.00        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
       25.94         0.07        34.09        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
       54.90        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 
       16.60         6.38        21.99        10.39        10.55         7.76 
TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        4.18        37.78        34.78        15.68        18.02        14.04 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-H7-7774 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7631 
       11.84         9.83         0.99         0.16         0.82         4.01 
TCGA-IQ-7632 
        3.72 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.07               0.07 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            111.12             210.94 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             14.79              13.64 
[1] "0.1 - 111.1 (14.8)" "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D71V2, continuous
D71V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     10   27
  18P LOSS WILD-TYPE   71  178
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               10                 71
  MALE                 27                178
D71V4, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1                2                 17
  T2               11                 68
  T3               11                 65
  T4               13                 89
D71V5, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0               16                 96
  N1                5                 39
  N2               14                 91
  N3                1                  3
D71V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     35    2
  18P LOSS WILD-TYPE  247    1
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0               35                247
  M1                2                  1
D71V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     11   26
  18P LOSS WILD-TYPE   65  184
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                11                 65
  YES               26                184
D71V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     10   27
  18P LOSS WILD-TYPE   37  212
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                10                 37
  YES               27                212

Clustering(72) Variable = 18q loss mutation analysis
D72V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED    44  35
  18Q LOSS WILD-TYPE 121  84
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                79                205 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                35                 84 
$`18Q LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6870 TCGA-BA-6871 
       15.16         9.30        53.75         5.00        14.79         2.07 
TCGA-BA-6872 TCGA-BB-4224 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 
       12.99         9.04        13.55        10.19         4.67         6.38 
TCGA-CN-4730 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-5355 TCGA-CN-5363 TCGA-CN-5364 
       11.28        12.13         7.89         9.17         8.28        16.21 
TCGA-CN-5367 TCGA-CN-5373 TCGA-CN-6011 TCGA-CN-6988 TCGA-CN-6992 TCGA-CN-6994 
       11.57        13.58         7.50         1.38         2.73         3.91 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CQ-5326 TCGA-CQ-6218 TCGA-CQ-6223 TCGA-CQ-6224 
        3.68         3.75         2.93        28.60        34.75        32.35 
TCGA-CQ-6225 TCGA-CQ-6228 TCGA-CQ-7065 TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7373 
       13.25        14.96        33.07         9.27        39.12        29.23 
TCGA-CR-7374 TCGA-CR-7399 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5970 TCGA-CV-5973 
        0.99         5.92        89.82        87.55        13.35        57.07 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6933 TCGA-CV-6940 
       48.59        33.11        43.23        40.96        90.08        26.43 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6960 TCGA-CV-6962 
       12.03        42.35        53.92        65.82        28.31         4.14 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7101 TCGA-CV-7104 TCGA-CV-7180 
      126.12       111.12        12.66         5.23        12.89        10.75 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7253 TCGA-CV-7423 TCGA-CV-7429 
       26.20        18.97        17.10        11.87       100.54         3.48 
TCGA-CV-7430 TCGA-CV-7434 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7086 TCGA-CX-7219 
       16.27         7.13         6.38        21.99         7.76        27.22 
TCGA-D6-6516 TCGA-D6-6823 TCGA-D6-6825 TCGA-DQ-5629 TCGA-F7-7848 TCGA-HD-7229 
       10.68         7.82         5.00        16.96         1.15         0.07 
TCGA-IQ-7630 
        5.26 

$`18Q LOSS WILD-TYPE`
TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 TCGA-BA-5152 
       13.64        16.08         9.07         8.15         6.25        27.78 
TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 TCGA-BA-6869 
       57.90         6.12         5.88         7.96        57.44         8.02 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 
        3.72         7.76         6.12        95.05         4.60         4.37 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 TCGA-CN-4733 
       18.31         6.31        10.68         5.46        12.59        17.16 
TCGA-CN-4736 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
       12.99        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5365 TCGA-CN-5366 
        9.50         5.69        12.39        28.47        11.54        11.84 
TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 
       12.49         8.52         9.01         6.81         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6989 TCGA-CN-6997 TCGA-CN-6998 
        6.61         6.18         7.36         5.82         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       48.16        39.68        21.50        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6220 TCGA-CQ-6221 TCGA-CQ-6227 
       33.80        10.42         4.21        32.35        32.88         4.21 
TCGA-CQ-6229 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 
       26.76        22.78        84.23        11.77        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 
       11.64         7.66        12.46        11.51        15.75        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 
       31.96         9.17        34.06        19.92        26.17        17.13 
TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       32.78        47.01        27.02        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5442 TCGA-CV-5443 
      108.33        47.28        19.20        17.95        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5971 TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 
       64.73        17.06        17.75         7.07        13.32        24.43 
TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
        5.88         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6950 TCGA-CV-6951 
       21.86        11.24       126.08        19.79        15.06        30.05 
TCGA-CV-6952 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-7089 
        6.08        10.98         7.13         8.38         2.50        64.80 
TCGA-CV-7095 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 
       18.81         7.99         9.01         1.84        52.31        21.76 
TCGA-CV-7178 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       71.21       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
       95.34         4.96        47.97         2.10        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 
       35.54       210.94        89.33         9.67         0.46        22.85 
TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7424 TCGA-CV-7425 
       25.02        25.94         0.07        34.09        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7435 TCGA-CV-7437 
      156.49        54.90        84.49        19.73       142.49        16.60 
TCGA-CX-7082 TCGA-CX-7085 TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6824 TCGA-D6-6826 
       10.39        10.55        13.25         8.22         2.53         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        4.18        37.78        34.78        15.68        18.02        14.04 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-H7-7774 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7631 
       11.84         9.83         0.99         0.16         0.82         4.01 
TCGA-IQ-7632 
        3.72 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.07               0.07 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            126.12             210.94 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             12.89              15.75 
[1] "0.1 - 126.1 (12.9)" "0.1 - 210.9 (15.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
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  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D72V2, continuous
D72V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     16   63
  18Q LOSS WILD-TYPE   65  142
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               16                 65
  MALE                 63                142
D72V4, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1                6                 13
  T2               19                 60
  T3               21                 55
  T4               33                 69
D72V5, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0               32                 80
  N1               13                 31
  N2               28                 77
  N3                2                  2
D72V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     77    2
  18Q LOSS WILD-TYPE  205    1
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0               77                205
  M1                2                  1
D72V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     23   56
  18Q LOSS WILD-TYPE   53  154
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                23                 53
  YES               56                154
D72V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     17   62
  18Q LOSS WILD-TYPE   30  177
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                17                 30
  YES               62                177

Clustering(73) Variable = 19p loss mutation analysis
D73V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    12  18
  19P LOSS WILD-TYPE 153 101
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                30                254 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                18                101 
$`19P LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-5153 TCGA-BA-6868 TCGA-BA-6871 TCGA-BA-7269 TCGA-CN-4725 
        8.15        57.90         5.00         2.07         7.76        10.19 
TCGA-CN-4736 TCGA-CN-5363 TCGA-CN-5370 TCGA-CN-6992 TCGA-CN-6995 TCGA-CQ-6220 
       12.99         8.28         8.52         2.73         3.68        32.35 
TCGA-CQ-6223 TCGA-CQ-6225 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7399 TCGA-CV-6441 
       34.75        13.25        47.18        39.12         5.92         5.88 
TCGA-CV-6933 TCGA-CV-6941 TCGA-CV-6945 TCGA-CV-6956 TCGA-CV-7095 TCGA-CV-7100 
       90.08        11.24        12.03         7.13        18.81         9.01 
TCGA-CV-7415 TCGA-CV-7421 TCGA-CV-7430 TCGA-CV-7440 TCGA-D6-6516 TCGA-D6-6825 
       22.85         0.07        16.27        21.99        10.68         5.00 

$`19P LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        16.08         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 TCGA-BA-5559 
       27.78         6.12         5.88         7.96        53.75        57.44 
TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BB-4217 TCGA-BB-4223 
        8.02        14.79        12.99         3.72         6.12        95.05 
TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 
        9.04         4.60         4.37        18.31         6.31        13.55 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
        4.67         6.38        10.68         5.46        11.28        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       17.16        12.13         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
       28.47        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
       13.58         9.01         6.81         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 
        6.61         6.18         7.36         1.38         5.82         3.91 
TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 
        3.75         3.29         1.51        48.16        39.68        21.50 
TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 
        2.93        38.89        27.65        29.46        33.80        10.42 
TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
        4.21        28.60        32.88        32.35         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       26.76        33.07        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 
        9.27        47.34        40.90        35.84         3.42         3.06 
TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
       24.95        29.23         0.99        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 
       30.54         7.10         5.13        35.41        29.92        48.36 
TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 
      135.29        17.16       129.21       108.33        47.28        19.20 
TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       17.95        89.82        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6934 
        7.07        43.23        40.96        13.32        24.43         2.14 
TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 
        9.70         5.46        20.52         4.70        21.86        26.43 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 
      126.08        19.79        42.35        15.06        30.05         6.08 
TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       53.92        65.82        10.98         8.38        28.31         2.50 
TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7097 TCGA-CV-7099 
        4.14        64.80       126.12       111.12        12.66         7.99 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        5.23         1.84        52.31        12.89        21.76        71.21 
TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 
       10.75       114.94        56.68         4.73        47.47        36.00 
TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 
       26.20        18.97        17.10        95.34         4.96        11.87 
TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 
       47.97         2.10        36.13        18.41        35.54       210.94 
TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7422 
       89.33         9.67         0.46        25.02        25.94        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
      100.54        14.86        56.48       156.49        54.90         3.48 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6517 
       10.39        10.55         7.76        27.22        13.25         8.22 
TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        7.82         2.53         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        15.68        18.02        14.04        11.84         9.83 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 
        1.15         0.99         0.07         0.16         0.82         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.07               0.07 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             90.08             210.94 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            10.435             15.010 
[1] "0.1 - 90.1 (10.4)"  "0.1 - 210.9 (15.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "2.2"
D73V2, continuous
D73V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      3   27
  19P LOSS WILD-TYPE   78  178
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE                3                 78
  MALE                 27                178
D73V4, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1                3                 16
  T2                8                 71
  T3               12                 64
  T4                7                 95
D73V5, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0               16                 96
  N1                5                 39
  N2                6                 99
  N3                2                  2
D73V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     29    1
  19P LOSS WILD-TYPE  253    2
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0               29                253
  M1                1                  2
D73V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      5   25
  19P LOSS WILD-TYPE   71  185
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 5                 71
  YES               25                185
D73V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      4   26
  19P LOSS WILD-TYPE   43  213
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 4                 43
  YES               26                213

Clustering(74) Variable = 19q loss mutation analysis
D74V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    11  11
  19Q LOSS WILD-TYPE 154 108
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                22                262 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                11                108 
$`19Q LOSS MUTATED`
TCGA-BA-6868 TCGA-BA-6871 TCGA-CN-4725 TCGA-CN-5363 TCGA-CN-6992 TCGA-CN-6997 
        5.00         2.07        10.19         8.28         2.73         3.29 
TCGA-CQ-6220 TCGA-CQ-6225 TCGA-CR-7365 TCGA-CR-7374 TCGA-CV-6441 TCGA-CV-6933 
       32.35        13.25        39.12         0.99         5.88        90.08 
TCGA-CV-6941 TCGA-CV-6956 TCGA-CV-6960 TCGA-CV-7100 TCGA-CV-7415 TCGA-CV-7430 
       11.24         7.13        28.31         9.01        22.85        16.27 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6825 TCGA-IQ-7630 
       10.68         8.22         5.00         5.26 

$`19Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 
       53.75        57.44         8.02        14.79        12.99         3.72 
TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 
        7.76         6.12        95.05         9.04         4.60         4.37 
TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 
       18.31         6.31        13.55         4.67         6.38        10.68 
TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 
        5.46        11.28        12.59        17.16        12.13        12.99 
TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 
        7.89        14.33        11.44        26.63        28.77        13.05 
TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5364 
        9.17         9.50         5.69        12.39        28.47        16.21 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
       11.54        11.84        11.57        12.49         8.52        13.58 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
        9.01         6.81         7.50         4.70         5.06         6.61 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
        5.23         1.48         4.41         3.19         9.07         6.61 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6995 
        6.18         7.36         1.38         5.82         3.91         3.68 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 
        3.75         1.51        48.16        39.68        21.50         2.93 
TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 
       38.89        27.65        29.46        33.80        10.42         4.21 
TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6227 TCGA-CQ-6228 
       28.60        32.88        34.75        32.35         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       26.76        33.07        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        47.18        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
        3.06        24.95        29.23        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       19.20        17.95        89.82        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 
       33.11         7.07        43.23        40.96        13.32        24.43 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 
       26.43       126.08        19.79        12.03        42.35        15.06 
TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6959 
       30.05         6.08        53.92        65.82        10.98         8.38 
TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 
        2.50         4.14        64.80       126.12       111.12        18.81 
TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 
       12.66         7.99         5.23         1.84        52.31        12.89 
TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 
       21.76        71.21        10.75       114.94        56.68         4.73 
TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 
       47.47        36.00        26.20        18.97        17.10        95.34 
TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 
        4.96        11.87        47.97         2.10        36.13        18.41 
TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7416 
       35.54       210.94        89.33         9.67         0.46        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
      156.49        54.90         3.48        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6826 
        7.76        27.22        13.25         7.82         2.53         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 
       14.04        11.84         9.83         1.15         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7631 TCGA-IQ-7632 
        0.16         0.82         4.01         3.72 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.99               0.07 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             90.08             210.94 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             8.645             15.010 
[1] "1.0 - 90.1 (8.6)"   "0.1 - 210.9 (15.0)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "2"  
D74V2, continuous
D74V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      1   21
  19Q LOSS WILD-TYPE   80  184
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE                1                 80
  MALE                 21                184
D74V4, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1                2                 17
  T2                5                 74
  T3               11                 65
  T4                4                 98
D74V5, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0               14                 98
  N1                2                 42
  N2                4                101
  N3                2                  2
D74V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     21    1
  19Q LOSS WILD-TYPE  261    2
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0               21                261
  M1                1                  2
D74V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      4   18
  19Q LOSS WILD-TYPE   72  192
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 4                 72
  YES               18                192
D74V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      4   18
  19Q LOSS WILD-TYPE   43  221
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 4                 43
  YES               18                221

Clustering(75) Variable = 20p loss mutation analysis
D75V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED     9   6
  20P LOSS WILD-TYPE 156 113
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                15                269 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 6                113 
$`20P LOSS MUTATED`
TCGA-BA-4074 TCGA-BA-6871 TCGA-BA-6873 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-6011 
       15.16         2.07         3.72         4.37        18.31         7.50 
TCGA-CN-6992 TCGA-CN-6995 TCGA-CR-7364 TCGA-CR-7374 TCGA-CV-5440 TCGA-CV-6441 
        2.73         3.68        47.18         0.99        89.82         5.88 
TCGA-CV-7104 TCGA-CV-7418 TCGA-CV-7428 
       12.89        25.94        54.90 

$`20P LOSS WILD-TYPE`
TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 TCGA-BA-5151 
        9.30        13.64        16.08         9.07         8.15         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5558 
       27.78        57.90         6.12         5.88         7.96        53.75 
TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-7269 
       57.44         5.00         8.02        14.79        12.99         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-CN-4722 TCGA-CN-4723 
        6.12        95.05         9.04         4.60         6.31        13.55 
TCGA-CN-4725 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 
       10.19         4.67         6.38        10.68         5.46        11.28 
TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
       12.59        17.16        12.13        12.99         7.89        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 
        5.69        12.39        28.47         8.28        16.21        11.54 
TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 
       11.84        11.57        12.49         8.52        13.58         9.01 
TCGA-CN-6010 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 
        6.81         4.70         5.06         6.61         5.23         1.48 
TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 
        4.41         3.19         9.07         6.61         6.18         7.36 
TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        1.38         5.82         3.91         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        10.42         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       26.76        33.07        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 
        9.27        39.12        47.34        40.90        35.84         3.42 
TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 
        3.06        24.95        29.23        31.96         9.17        34.06 
TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 
       19.92        26.17        17.13        32.78        47.01        27.02 
TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 
       12.89        29.82        30.02        31.10        29.85        29.52 
TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 TCGA-CR-7401 TCGA-CR-7402 
       30.54         7.10         5.13         5.92        35.41        29.92 
TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 TCGA-CV-5435 
       48.36       135.29        17.16       129.21       108.33        47.28 
TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 
       19.20        17.95        87.55        76.47        84.39        64.73 
TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 
       17.06        13.35        17.75        57.07        48.59        33.11 
TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 
        7.07        43.23        40.96        13.32        24.43        90.08 
TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 
        2.14         9.70         5.46        20.52         4.70        21.86 
TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 
       26.43        11.24       126.08        19.79        12.03        42.35 
TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 
       15.06        30.05         6.08        53.92        65.82        10.98 
TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 
        7.13         8.38        28.31         2.50         4.14        64.80 
TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 
      126.12       111.12        18.81        12.66         7.99         9.01 
TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 
        5.23         1.84        52.31        21.76        71.21        10.75 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 
      114.94        56.68         4.73        47.47        36.00        26.20 
TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 
       18.97        17.10        95.34         4.96        11.87        47.97 
TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 
        2.10        36.13        18.41        35.54       210.94        89.33 
TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7421 TCGA-CV-7422 
        9.67         0.46        22.85        25.02         0.07        34.09 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7429 TCGA-CV-7430 
      100.54        14.86        56.48       156.49         3.48        16.27 
TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 
       84.49        19.73         7.13       142.49        16.60         6.38 
TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 
       21.99        10.39        10.55         7.76        27.22        13.25 
TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       10.68         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 
        4.18        37.78        34.78        16.96        15.68        18.02 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 
       14.04        11.84         9.83         1.15         0.99         0.07 
TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 TCGA-IQ-7631 TCGA-IQ-7632 
        0.16         0.82         5.26         4.01         3.72 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.99               0.07 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             89.82             210.94 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              7.50              14.33 
[1] "1.0 - 89.8 (7.5)"   "0.1 - 210.9 (14.3)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D75V2, continuous
D75V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      2   13
  20P LOSS WILD-TYPE   79  192
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                2                 79
  MALE                 13                192
D75V4, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1                0                 19
  T2                3                 76
  T3                5                 71
  T4                7                 95
D75V5, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0                6                106
  N1                0                 44
  N2                9                 96
  N3                0                  4
D75V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     14    1
  20P LOSS WILD-TYPE  268    2
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0               14                268
  M1                1                  2
D75V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      3   12
  20P LOSS WILD-TYPE   73  198
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 3                 73
  YES               12                198
D75V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      3   12
  20P LOSS WILD-TYPE   44  227
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 3                 44
  YES               12                227

Clustering(76) Variable = 20q loss mutation analysis
D76V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED     5   1
  20Q LOSS WILD-TYPE 160 118
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 6                278 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 1                118 
$`20Q LOSS MUTATED`
TCGA-BA-6871 TCGA-CN-5360 TCGA-CR-7402 TCGA-CV-5440 TCGA-CV-6433 TCGA-CV-7418 
        2.07        28.47        29.92        89.82        13.32        25.94 

$`20Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 
       53.75        57.44         5.00         8.02        14.79        12.99 
TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 
        3.72         7.76         6.12        95.05         9.04         4.60 
TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4726 
        4.37        18.31         6.31        13.55        10.19         4.67 
TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 
        6.38        10.68         5.46        11.28        12.59        17.16 
TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4739 TCGA-CN-4740 
       12.13        12.99         7.89        14.33        11.44        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        8.28        16.21        11.54        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
        8.52        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 
        2.73         3.91         3.68         3.75         3.29         1.51 
TCGA-CQ-5323 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 
       48.16        39.68        21.50         2.93        38.89        27.65 
TCGA-CQ-5330 TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 
       29.46        33.80        10.42         4.21        28.60        32.35 
TCGA-CQ-6221 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
       32.88        34.75        32.35        13.25         4.21        14.96 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
       26.76        33.07        22.78        84.23        11.77        54.64 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
       37.87        26.24        58.42        50.01        39.52        34.52 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
       36.99        18.51        16.90         6.02        11.90        10.22 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
       11.34        11.64         7.66        12.46        11.51        15.75 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
        9.27        47.18        39.12        47.34        40.90        35.84 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
        3.42         3.06        24.95        29.23         0.99        31.96 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
        9.17        34.06        19.92        26.17        17.13        32.78 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
       47.01        27.02        12.89        29.82        30.02        31.10 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
       29.85        29.52        30.54         7.10         5.13         5.92 
TCGA-CR-7401 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 TCGA-CV-5434 
       35.41        48.36       135.29        17.16       129.21       108.33 
TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
       47.28        19.20        17.95        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6436 TCGA-CV-6441 
       33.11         7.07        43.23        40.96        24.43         5.88 
TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 
       90.08         2.14         9.70         5.46        20.52         4.70 
TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 
       21.86        26.43        11.24       126.08        19.79        12.03 
TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       42.35        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 
       10.98         7.13         8.38        28.31         2.50         4.14 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 
        0.07        34.09       100.54        14.86        56.48       156.49 
TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 
       54.90         3.48        16.27        84.49        19.73         7.13 
TCGA-CV-7435 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 
      142.49        16.60         6.38        21.99        10.39        10.55 
TCGA-CX-7086 TCGA-CX-7219 TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 
        7.76        27.22        13.25        10.68         8.22         7.82 
TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 
        2.53         5.00         5.03         4.18        37.78        34.78 
TCGA-DQ-5629 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 
       16.96        15.68        18.02        14.04        11.84         9.83 
TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-IQ-7630 
        1.15         0.99         0.07         0.16         0.82         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              2.07               0.07 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             89.82             210.94 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            27.205             13.610 
[1] "2.1 - 89.8 (27.2)"  "0.1 - 210.9 (13.6)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "3.3"
D76V2, continuous
D76V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0    6
  20Q LOSS WILD-TYPE   81  199
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE                0                 81
  MALE                  6                199
D76V4, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                0                 19
  T2                1                 78
  T3                2                 74
  T4                3                 99
D76V5, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0                3                109
  N1                0                 44
  N2                3                102
  N3                0                  4
D76V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      5    1
  20Q LOSS WILD-TYPE  277    2
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0                5                277
  M1                1                  2
D76V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      2    4
  20Q LOSS WILD-TYPE   74  206
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 2                 74
  YES                4                206
D76V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      1    5
  20Q LOSS WILD-TYPE   46  234
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 1                 46
  YES                5                234

Clustering(77) Variable = 21q loss mutation analysis
D77V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    31  23
  21Q LOSS WILD-TYPE 134  96
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                54                230 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                23                 96 
$`21Q LOSS MUTATED`
TCGA-BA-5558 TCGA-BA-6868 TCGA-BA-6871 TCGA-CN-4726 TCGA-CN-4737 TCGA-CN-5363 
       53.75         5.00         2.07         4.67         7.89         8.28 
TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-6010 TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6997 
       16.21        11.54         6.81         2.73         3.91         3.29 
TCGA-CQ-5323 TCGA-CQ-5326 TCGA-CQ-5330 TCGA-CQ-5332 TCGA-CQ-6220 TCGA-CQ-6223 
       48.16         2.93        29.46        10.42        32.35        34.75 
TCGA-CQ-6225 TCGA-CQ-7065 TCGA-CR-5247 TCGA-CR-6491 TCGA-CR-7365 TCGA-CR-7369 
       13.25        33.07        11.77        11.51        39.12        35.84 
TCGA-CR-7388 TCGA-CR-7399 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5977 TCGA-CV-5979 
       27.02         5.92        17.95        89.82        33.11        43.23 
TCGA-CV-6003 TCGA-CV-6441 TCGA-CV-6934 TCGA-CV-6941 TCGA-CV-6948 TCGA-CV-6956 
       40.96         5.88         2.14        11.24        42.35         7.13 
TCGA-CV-6959 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7090 TCGA-CV-7097 TCGA-CV-7103 
        8.38         2.50         4.14       126.12        12.66        52.31 
TCGA-CV-7180 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7254 TCGA-CV-7261 TCGA-CV-7435 
       10.75        36.00        26.20        47.97        36.13       142.49 
TCGA-CX-7082 TCGA-CX-7086 TCGA-D6-6516 TCGA-DQ-5629 TCGA-HD-7229 TCGA-HD-7753 
       10.39         7.76        10.68        16.96         0.07         0.16 

$`21Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
       15.16         9.30        13.64        16.08         9.07         8.15 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
        6.25        27.78        57.90         6.12         5.88         7.96 
TCGA-BA-5559 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
       57.44         8.02        14.79        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 
        6.12        95.05         9.04         4.60         4.37        18.31 
TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 
        6.31        13.55        10.19         6.38        10.68         5.46 
TCGA-CN-4730 TCGA-CN-4731 TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4738 
       11.28        12.59        17.16        12.13        12.99        14.33 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
       11.44        26.63        28.77        13.05         9.17         9.50 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 
        5.69        12.39        28.47        11.84        11.57        12.49 
TCGA-CN-5370 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 
        8.52        13.58         9.01         7.50         4.70         5.06 
TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 
        6.61         5.23         1.48         4.41         3.19         9.07 
TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6995 
        6.61         6.18         7.36         1.38         5.82         3.68 
TCGA-CN-6996 TCGA-CN-6998 TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5327 TCGA-CQ-5329 
        3.75         1.51        39.68        21.50        38.89        27.65 
TCGA-CQ-5331 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6221 TCGA-CQ-6224 TCGA-CQ-6227 
       33.80         4.21        28.60        32.88        32.35         4.21 
TCGA-CQ-6228 TCGA-CQ-6229 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5248 TCGA-CR-5249 
       14.96        26.76        22.78        84.23        54.64        37.87 
TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 
       26.24        58.42        50.01        39.52        34.52        36.99 
TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 
       18.51        16.90         6.02        11.90        10.22        11.34 
TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6492 TCGA-CR-6493 TCGA-CR-7364 
       11.64         7.66        12.46        15.75         9.27        47.18 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 
       47.34        40.90         3.42         3.06        24.95        29.23 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 
       17.13        32.78        47.01        12.89        29.82        30.02 
TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 
       31.10        29.85        29.52        30.54         7.10         5.13 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5441 TCGA-CV-5442 TCGA-CV-5443 
      108.33        47.28        19.20        87.55        76.47        84.39 
TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 TCGA-CV-5973 TCGA-CV-5976 
       64.73        17.06        13.35        17.75        57.07        48.59 
TCGA-CV-5978 TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6935 TCGA-CV-6936 
        7.07        13.32        24.43        90.08         9.70         5.46 
TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6942 TCGA-CV-6943 
       20.52         4.70        21.86        26.43       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 
       12.03        15.06        30.05         6.08        53.92        65.82 
TCGA-CV-6955 TCGA-CV-6960 TCGA-CV-7089 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7099 
       10.98        28.31        64.80       111.12        18.81         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 
        9.01         5.23         1.84        12.89        21.76        71.21 
TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7247 TCGA-CV-7248 
      114.94        56.68         4.73        47.47        18.97        17.10 
TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7255 TCGA-CV-7263 TCGA-CV-7407 
       95.34         4.96        11.87         2.10        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 
      210.94        89.33         9.67         0.46        22.85        25.02 
TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 
       25.94         0.07        34.09       100.54        14.86        56.48 
TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 
      156.49        54.90         3.48        16.27        84.49        19.73 
TCGA-CV-7434 TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7085 TCGA-CX-7219 
        7.13        16.60         6.38        21.99        10.55        27.22 
TCGA-D6-6515 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 TCGA-D6-6826 
       13.25         8.22         7.82         2.53         5.00         5.03 
TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5630 TCGA-DQ-5631 TCGA-DQ-7588 
        4.18        37.78        34.78        15.68        18.02        14.04 
TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7754 TCGA-IQ-7630 
       11.84         9.83         1.15         0.99         0.82         5.26 
TCGA-IQ-7631 TCGA-IQ-7632 
        4.01         3.72 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.07               0.07 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            142.49             210.94 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            11.655             14.825 
[1] "0.1 - 142.5 (11.7)" "0.1 - 210.9 (14.8)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
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  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D77V2, continuous
D77V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      9   45
  21Q LOSS WILD-TYPE   72  160
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE                9                 72
  MALE                 45                160
D77V4, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1                2                 17
  T2               15                 64
  T3               19                 57
  T4               18                 84
D77V5, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0               22                 90
  N1                8                 36
  N2               20                 85
  N3                3                  1
D77V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     51    2
  21Q LOSS WILD-TYPE  231    1
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0               51                231
  M1                2                  1
D77V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     15   39
  21Q LOSS WILD-TYPE   61  171
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                15                 61
  YES               39                171
D77V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      9   45
  21Q LOSS WILD-TYPE   38  194
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 9                 38
  YES               45                194

Clustering(78) Variable = 22q loss mutation analysis
D78V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    15   8
  22Q LOSS WILD-TYPE 150 111
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                23                261 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 8                111 
$`22Q LOSS MUTATED`
TCGA-BA-5149 TCGA-BA-5558 TCGA-BA-6871 TCGA-BB-4224 TCGA-CN-4725 TCGA-CN-4730 
        8.15        53.75         2.07         9.04        10.19        11.28 
TCGA-CN-4739 TCGA-CN-5370 TCGA-CN-6995 TCGA-CQ-7065 TCGA-CR-6493 TCGA-CR-7373 
       11.44         8.52         3.68        33.07         9.27        29.23 
TCGA-CR-7398 TCGA-CR-7399 TCGA-CV-5973 TCGA-CV-6441 TCGA-CV-6962 TCGA-CV-7413 
        5.13         5.92        57.07         5.88         4.14         9.67 
TCGA-CV-7421 TCGA-CX-7086 TCGA-DQ-5631 TCGA-DQ-7592 TCGA-IQ-7630 
        0.07         7.76        18.02         9.83         5.26 

$`22Q LOSS WILD-TYPE`
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5151 
       15.16         9.30        13.64        16.08         9.07         6.25 
TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 TCGA-BA-5559 
       27.78        57.90         6.12         5.88         7.96        57.44 
TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 
        5.00         8.02        14.79        12.99         3.72         7.76 
TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 
        6.12        95.05         4.60         4.37        18.31         6.31 
TCGA-CN-4723 TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4731 
       13.55         4.67         6.38        10.68         5.46        12.59 
TCGA-CN-4733 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 TCGA-CN-4740 
       17.16        12.13        12.99         7.89        14.33        26.63 
TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 TCGA-CN-5358 TCGA-CN-5359 
       28.77        13.05         9.17         9.50         5.69        12.39 
TCGA-CN-5360 TCGA-CN-5363 TCGA-CN-5364 TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 
       28.47         8.28        16.21        11.54        11.84        11.57 
TCGA-CN-5369 TCGA-CN-5373 TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 
       12.49        13.58         9.01         6.81         7.50         4.70 
TCGA-CN-6013 TCGA-CN-6016 TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 
        5.06         6.61         5.23         1.48         4.41         3.19 
TCGA-CN-6021 TCGA-CN-6022 TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 
        9.07         6.61         6.18         7.36         1.38         5.82 
TCGA-CN-6992 TCGA-CN-6994 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 
        2.73         3.91         3.75         3.29         1.51        48.16 
TCGA-CQ-5324 TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 
       39.68        21.50         2.93        38.89        27.65        29.46 
TCGA-CQ-5331 TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6220 TCGA-CQ-6221 
       33.80        10.42         4.21        28.60        32.35        32.88 
TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 TCGA-CQ-6229 
       34.75        32.35        13.25         4.21        14.96        26.76 
TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 TCGA-CR-5249 TCGA-CR-5250 
       22.78        84.23        11.77        54.64        37.87        26.24 
TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 TCGA-CR-6473 TCGA-CR-6474 
       58.42        50.01        39.52        34.52        36.99        18.51 
TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 TCGA-CR-6482 TCGA-CR-6484 
       16.90         6.02        11.90        10.22        11.34        11.64 
TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 TCGA-CR-7364 TCGA-CR-7365 
        7.66        12.46        11.51        15.75        47.18        39.12 
TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 
       47.34        40.90        35.84         3.42         3.06        24.95 
TCGA-CR-7374 TCGA-CR-7376 TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 
        0.99        31.96         9.17        34.06        19.92        26.17 
TCGA-CR-7383 TCGA-CR-7385 TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 
       17.13        32.78        47.01        27.02        12.89        29.82 
TCGA-CR-7391 TCGA-CR-7392 TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 
       30.02        31.10        29.85        29.52        30.54         7.10 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
       35.41        29.92        48.36       135.29        17.16       129.21 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
      108.33        47.28        19.20        17.95        89.82        87.55 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
       76.47        84.39        64.73        17.06        13.35        17.75 
TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 TCGA-CV-6433 
       48.59        33.11         7.07        43.23        40.96        13.32 
TCGA-CV-6436 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 TCGA-CV-6936 TCGA-CV-6937 
       24.43        90.08         2.14         9.70         5.46        20.52 
TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 TCGA-CV-6942 TCGA-CV-6943 
        4.70        21.86        26.43        11.24       126.08        19.79 
TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 TCGA-CV-6952 TCGA-CV-6953 
       12.03        42.35        15.06        30.05         6.08        53.92 
TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 TCGA-CV-6960 TCGA-CV-6961 
       65.82        10.98         7.13         8.38        28.31         2.50 
TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 
       64.80       126.12       111.12        18.81        12.66         7.99 
TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 
        9.01         5.23         1.84        52.31        12.89        21.76 
TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 
       71.21        10.75       114.94        56.68         4.73        47.47 
TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 
       36.00        26.20        18.97        17.10        95.34         4.96 
TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 
       11.87        47.97         2.10        36.13        18.41        35.54 
TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 
      210.94        89.33         0.46        22.85        25.02        25.94 
TCGA-CV-7422 TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 
       34.09       100.54        14.86        56.48       156.49        54.90 
TCGA-CV-7429 TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 
        3.48        16.27        84.49        19.73         7.13       142.49 
TCGA-CV-7437 TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7219 
       16.60         6.38        21.99        10.39        10.55        27.22 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
       13.25        10.68         8.22         7.82         2.53         5.00 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
        5.03         4.18        37.78        34.78        16.96        15.68 
TCGA-DQ-7588 TCGA-DQ-7591 TCGA-F7-7848 TCGA-H7-7774 TCGA-HD-7229 TCGA-HD-7753 
       14.04        11.84         1.15         0.99         0.07         0.16 
TCGA-HD-7754 TCGA-IQ-7631 TCGA-IQ-7632 
        0.82         4.01         3.72 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.07               0.07 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             57.07             210.94 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              9.04              15.16 
[1] "0.1 - 57.1 (9.0)"   "0.1 - 210.9 (15.2)"
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4074         TCGA-BA-4075         TCGA-BA-4076 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-4077         TCGA-BA-4078         TCGA-BA-5149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-5151         TCGA-BA-5152         TCGA-BA-5153 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5555         TCGA-BA-5556         TCGA-BA-5557 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-5558         TCGA-BA-5559         TCGA-BA-6868 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BA-6869         TCGA-BA-6870         TCGA-BA-6871 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BA-6872         TCGA-BA-6873         TCGA-BA-7269 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BB-4217         TCGA-BB-4223         TCGA-BB-4224 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BB-4225         TCGA-BB-4227         TCGA-BB-4228 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4722         TCGA-CN-4723         TCGA-CN-4725 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-4726         TCGA-CN-4727         TCGA-CN-4728 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4729         TCGA-CN-4730         TCGA-CN-4731 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4733         TCGA-CN-4735         TCGA-CN-4736 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-4737         TCGA-CN-4738         TCGA-CN-4739 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-4740         TCGA-CN-4741         TCGA-CN-4742 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5355         TCGA-CN-5356         TCGA-CN-5358 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5359         TCGA-CN-5360         TCGA-CN-5363 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5364         TCGA-CN-5365         TCGA-CN-5366 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-5367         TCGA-CN-5369         TCGA-CN-5370 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CN-5373         TCGA-CN-5374         TCGA-CN-6010 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6011         TCGA-CN-6012         TCGA-CN-6013 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6016         TCGA-CN-6017         TCGA-CN-6018 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6019         TCGA-CN-6020         TCGA-CN-6021 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6022         TCGA-CN-6023         TCGA-CN-6024 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6988         TCGA-CN-6989         TCGA-CN-6992 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6994         TCGA-CN-6995         TCGA-CN-6996 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CN-6997         TCGA-CN-6998         TCGA-CQ-5323 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5324         TCGA-CQ-5325         TCGA-CQ-5326 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5327         TCGA-CQ-5329         TCGA-CQ-5330 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-5331         TCGA-CQ-5332         TCGA-CQ-5334 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6218         TCGA-CQ-6220         TCGA-CQ-6221 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6223         TCGA-CQ-6224         TCGA-CQ-6225 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-6227         TCGA-CQ-6228         TCGA-CQ-6229 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CQ-7065         TCGA-CQ-7068         TCGA-CR-5243 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5247         TCGA-CR-5248         TCGA-CR-5249 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-5250         TCGA-CR-6467         TCGA-CR-6470 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6471         TCGA-CR-6472         TCGA-CR-6473 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6474         TCGA-CR-6477         TCGA-CR-6478 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6480         TCGA-CR-6481         TCGA-CR-6482 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6484         TCGA-CR-6487         TCGA-CR-6488 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-6491         TCGA-CR-6492         TCGA-CR-6493 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CR-7364         TCGA-CR-7365         TCGA-CR-7367 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7368         TCGA-CR-7369         TCGA-CR-7370 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7371         TCGA-CR-7372         TCGA-CR-7373 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CR-7374         TCGA-CR-7376         TCGA-CR-7377 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7379         TCGA-CR-7380         TCGA-CR-7382 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7383         TCGA-CR-7385         TCGA-CR-7386 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7388         TCGA-CR-7389         TCGA-CR-7390 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7391         TCGA-CR-7392         TCGA-CR-7393 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7394         TCGA-CR-7395         TCGA-CR-7397 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7398         TCGA-CR-7399         TCGA-CR-7401 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CR-7402         TCGA-CR-7404         TCGA-CV-5430 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5431         TCGA-CV-5432         TCGA-CV-5434 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5435         TCGA-CV-5436         TCGA-CV-5439 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5440         TCGA-CV-5441         TCGA-CV-5442 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5443         TCGA-CV-5444         TCGA-CV-5966 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5970         TCGA-CV-5971         TCGA-CV-5973 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CV-5976         TCGA-CV-5977         TCGA-CV-5978 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-5979         TCGA-CV-6003         TCGA-CV-6433 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6436         TCGA-CV-6441         TCGA-CV-6933 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6934         TCGA-CV-6935         TCGA-CV-6936 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6937         TCGA-CV-6938         TCGA-CV-6939 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6940         TCGA-CV-6941         TCGA-CV-6942 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6943         TCGA-CV-6945         TCGA-CV-6948 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6950         TCGA-CV-6951         TCGA-CV-6952 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6953         TCGA-CV-6954         TCGA-CV-6955 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6956         TCGA-CV-6959         TCGA-CV-6960 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-6961         TCGA-CV-6962         TCGA-CV-7089 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7090         TCGA-CV-7091         TCGA-CV-7095 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7097         TCGA-CV-7099         TCGA-CV-7100 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7101         TCGA-CV-7102         TCGA-CV-7103 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7104         TCGA-CV-7177         TCGA-CV-7178 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7180         TCGA-CV-7183         TCGA-CV-7235 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7236         TCGA-CV-7238         TCGA-CV-7242 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7245         TCGA-CV-7247         TCGA-CV-7248 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7250         TCGA-CV-7252         TCGA-CV-7253 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7254         TCGA-CV-7255         TCGA-CV-7261 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7263         TCGA-CV-7407         TCGA-CV-7410 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7411         TCGA-CV-7413         TCGA-CV-7414 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7415         TCGA-CV-7416         TCGA-CV-7418 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7421         TCGA-CV-7422         TCGA-CV-7423 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7424         TCGA-CV-7425         TCGA-CV-7427 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7428         TCGA-CV-7429         TCGA-CV-7430 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7432         TCGA-CV-7433         TCGA-CV-7434 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7435         TCGA-CV-7437         TCGA-CV-7438 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CV-7440         TCGA-CX-7082         TCGA-CX-7085 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CX-7086         TCGA-CX-7219         TCGA-D6-6515 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6516         TCGA-D6-6517         TCGA-D6-6823 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6824         TCGA-D6-6825         TCGA-D6-6826 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-D6-6827         TCGA-DQ-5624         TCGA-DQ-5625 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DQ-5629         TCGA-DQ-5630         TCGA-DQ-5631 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DQ-7588         TCGA-DQ-7591         TCGA-DQ-7592 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-F7-7848         TCGA-H7-7774         TCGA-HD-7229 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HD-7753         TCGA-HD-7754         TCGA-IQ-7630 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-IQ-7631         TCGA-IQ-7632 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D78V2, continuous
D78V3, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      4   19
  22Q LOSS WILD-TYPE   77  186
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE                4                 77
  MALE                 19                186
D78V4, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1                0                 19
  T2                5                 74
  T3                8                 68
  T4                9                 93
D78V5, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0               10                102
  N1                5                 39
  N2                7                 98
  N3                0                  4
D78V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     22    1
  22Q LOSS WILD-TYPE  260    2
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0               22                260
  M1                1                  2
D78V7, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      6   17
  22Q LOSS WILD-TYPE   70  193
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 6                 70
  YES               17                193
D78V8, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      4   19
  22Q LOSS WILD-TYPE   43  220
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 4                 43
  YES               19                220
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                           "PATHOLOGY.T" 
                                      V5 
                           "PATHOLOGY.N" 
                                      V6 
                   "PATHOLOGICSPREAD(M)" 
                                      V7 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V8 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
