
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.32.3479/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.32.3479/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/HNSC/1591032/1.GDAC_mergedClustering.Finished/HNSC.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/HNSC/1552283/1.GDAC_clinicalDataPicker.Finished/HNSC.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=293, in cluster file=292, common to both=290
[1]   5 290
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
 90  97 103 
  1   2   3 
 90  97 103 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3 
73 65 90 
 1  2  3 
73 65 90 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
64 70 94 
 1  2  3 
64 70 94 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
 75 102  81 
  1   2   3 
 75 102  81 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 13 145 100 
  1   2   3 
 13 145 100 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "NEOADJUVANTTHERAPY"                    
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 290 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-BA-4074 TCGA-BA-4075 TCGA-BA-4076 TCGA-BA-4077 TCGA-BA-4078 TCGA-BA-5149 
         461          283          415          489          276          248 
TCGA-BA-5151 TCGA-BA-5152 TCGA-BA-5153 TCGA-BA-5555 TCGA-BA-5556 TCGA-BA-5557 
         190          845         1761          186          179          242 
TCGA-BA-5558 TCGA-BA-5559 TCGA-BA-6868 TCGA-BA-6869 TCGA-BA-6870 TCGA-BA-6871 
        1635         1747          152          244           NA           63 
TCGA-BA-6872 TCGA-BA-6873 TCGA-BA-7269 TCGA-BB-4217 TCGA-BB-4223 TCGA-BB-4224 
          NA          113          236          186         2891          275 
TCGA-BB-4225 TCGA-BB-4227 TCGA-BB-4228 TCGA-CN-4722 TCGA-CN-4723 TCGA-CN-4725 
         140          133          557          192          412          310 
TCGA-CN-4726 TCGA-CN-4727 TCGA-CN-4728 TCGA-CN-4729 TCGA-CN-4730 TCGA-CN-4731 
         142          194          325          166          343          383 
TCGA-CN-4733 TCGA-CN-4734 TCGA-CN-4735 TCGA-CN-4736 TCGA-CN-4737 TCGA-CN-4738 
         522          226          369          395          240          436 
TCGA-CN-4739 TCGA-CN-4740 TCGA-CN-4741 TCGA-CN-4742 TCGA-CN-5355 TCGA-CN-5356 
         348          810          875          397          279          289 
TCGA-CN-5358 TCGA-CN-5359 TCGA-CN-5360 TCGA-CN-5361 TCGA-CN-5363 TCGA-CN-5364 
         173          377          866          193          252          493 
TCGA-CN-5365 TCGA-CN-5366 TCGA-CN-5367 TCGA-CN-5369 TCGA-CN-5370 TCGA-CN-5373 
         351          360          352          380           NA          413 
TCGA-CN-5374 TCGA-CN-6010 TCGA-CN-6011 TCGA-CN-6012 TCGA-CN-6013 TCGA-CN-6016 
         274          207          228          143          154          201 
TCGA-CN-6017 TCGA-CN-6018 TCGA-CN-6019 TCGA-CN-6020 TCGA-CN-6021 TCGA-CN-6022 
         159           45          134           97          276          201 
TCGA-CN-6023 TCGA-CN-6024 TCGA-CN-6988 TCGA-CN-6989 TCGA-CN-6992 TCGA-CN-6994 
         188          224           42          177           83          119 
TCGA-CN-6995 TCGA-CN-6996 TCGA-CN-6997 TCGA-CN-6998 TCGA-CQ-5323 TCGA-CQ-5324 
          NA          114          100           46         1465         1207 
TCGA-CQ-5325 TCGA-CQ-5326 TCGA-CQ-5327 TCGA-CQ-5329 TCGA-CQ-5330 TCGA-CQ-5331 
         654           NA         1183          841          896         1028 
TCGA-CQ-5332 TCGA-CQ-5334 TCGA-CQ-6218 TCGA-CQ-6219 TCGA-CQ-6220 TCGA-CQ-6221 
         317          128          870           NA           NA         1000 
TCGA-CQ-6222 TCGA-CQ-6223 TCGA-CQ-6224 TCGA-CQ-6225 TCGA-CQ-6227 TCGA-CQ-6228 
        1160         1057          984           NA           NA           NA 
TCGA-CQ-6229 TCGA-CQ-7065 TCGA-CQ-7068 TCGA-CR-5243 TCGA-CR-5247 TCGA-CR-5248 
         814         1006          693         2562          358         1662 
TCGA-CR-5249 TCGA-CR-5250 TCGA-CR-6467 TCGA-CR-6470 TCGA-CR-6471 TCGA-CR-6472 
        1152          798         1777         1521           NA         1050 
TCGA-CR-6473 TCGA-CR-6474 TCGA-CR-6477 TCGA-CR-6478 TCGA-CR-6480 TCGA-CR-6481 
        1125           NA          514           NA          362          311 
TCGA-CR-6482 TCGA-CR-6484 TCGA-CR-6487 TCGA-CR-6488 TCGA-CR-6491 TCGA-CR-6492 
         345          354          233          379          350          479 
TCGA-CR-6493 TCGA-CR-7364 TCGA-CR-7365 TCGA-CR-7367 TCGA-CR-7368 TCGA-CR-7369 
          NA         1435         1190         1440         1244           NA 
TCGA-CR-7370 TCGA-CR-7371 TCGA-CR-7372 TCGA-CR-7373 TCGA-CR-7374 TCGA-CR-7376 
         104           NA          759          889           30          972 
TCGA-CR-7377 TCGA-CR-7379 TCGA-CR-7380 TCGA-CR-7382 TCGA-CR-7383 TCGA-CR-7385 
          NA         1036           NA          796           NA          997 
TCGA-CR-7386 TCGA-CR-7388 TCGA-CR-7389 TCGA-CR-7390 TCGA-CR-7391 TCGA-CR-7392 
        1430           NA          392          907          913          946 
TCGA-CR-7393 TCGA-CR-7394 TCGA-CR-7395 TCGA-CR-7397 TCGA-CR-7398 TCGA-CR-7399 
         908          898          929          216          156          180 
TCGA-CR-7401 TCGA-CR-7402 TCGA-CR-7404 TCGA-CV-5430 TCGA-CV-5431 TCGA-CV-5432 
        1077          910         1471         4115          522         3930 
TCGA-CV-5434 TCGA-CV-5435 TCGA-CV-5436 TCGA-CV-5439 TCGA-CV-5440 TCGA-CV-5441 
        3295         1438          584          546         2732         2663 
TCGA-CV-5442 TCGA-CV-5443 TCGA-CV-5444 TCGA-CV-5966 TCGA-CV-5970 TCGA-CV-5971 
        2326         2567         1969          519          406          540 
TCGA-CV-5973 TCGA-CV-5976 TCGA-CV-5977 TCGA-CV-5978 TCGA-CV-5979 TCGA-CV-6003 
        1736         1478         1007          215         1315         1246 
TCGA-CV-6433 TCGA-CV-6436 TCGA-CV-6441 TCGA-CV-6933 TCGA-CV-6934 TCGA-CV-6935 
         405          743          179           NA           NA           NA 
TCGA-CV-6936 TCGA-CV-6937 TCGA-CV-6938 TCGA-CV-6939 TCGA-CV-6940 TCGA-CV-6941 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6942 TCGA-CV-6943 TCGA-CV-6945 TCGA-CV-6948 TCGA-CV-6950 TCGA-CV-6951 
        3835           NA           NA           NA           NA           NA 
TCGA-CV-6952 TCGA-CV-6953 TCGA-CV-6954 TCGA-CV-6955 TCGA-CV-6956 TCGA-CV-6959 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-6960 TCGA-CV-6961 TCGA-CV-6962 TCGA-CV-7089 TCGA-CV-7090 TCGA-CV-7091 
          NA           NA           NA           NA         3836         3380 
TCGA-CV-7095 TCGA-CV-7097 TCGA-CV-7099 TCGA-CV-7100 TCGA-CV-7101 TCGA-CV-7102 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7103 TCGA-CV-7104 TCGA-CV-7177 TCGA-CV-7178 TCGA-CV-7180 TCGA-CV-7183 
          NA           NA           NA           NA           NA         3496 
TCGA-CV-7235 TCGA-CV-7236 TCGA-CV-7238 TCGA-CV-7242 TCGA-CV-7245 TCGA-CV-7247 
        1724           NA         1444         1095          797           NA 
TCGA-CV-7248 TCGA-CV-7250 TCGA-CV-7252 TCGA-CV-7253 TCGA-CV-7254 TCGA-CV-7255 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7261 TCGA-CV-7263 TCGA-CV-7407 TCGA-CV-7410 TCGA-CV-7411 TCGA-CV-7413 
        1099           NA           NA           NA           NA           NA 
TCGA-CV-7414 TCGA-CV-7415 TCGA-CV-7416 TCGA-CV-7418 TCGA-CV-7421 TCGA-CV-7422 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7423 TCGA-CV-7424 TCGA-CV-7425 TCGA-CV-7427 TCGA-CV-7428 TCGA-CV-7429 
          NA           NA           NA           NA           NA           NA 
TCGA-CV-7430 TCGA-CV-7432 TCGA-CV-7433 TCGA-CV-7434 TCGA-CV-7435 TCGA-CV-7437 
          NA           NA           NA           NA         4334           NA 
TCGA-CV-7438 TCGA-CV-7440 TCGA-CX-7082 TCGA-CX-7085 TCGA-CX-7086 TCGA-CX-7219 
          NA           NA          316          321          236          828 
TCGA-D6-6515 TCGA-D6-6516 TCGA-D6-6517 TCGA-D6-6823 TCGA-D6-6824 TCGA-D6-6825 
         403          325          250          238           77          152 
TCGA-D6-6826 TCGA-D6-6827 TCGA-DQ-5624 TCGA-DQ-5625 TCGA-DQ-5629 TCGA-DQ-5630 
         153          127         1149         1058          516          477 
TCGA-DQ-5631 TCGA-DQ-7588 TCGA-DQ-7591 TCGA-DQ-7592 TCGA-F7-7848 TCGA-H7-7774 
         548           NA          360          299           35           30 
TCGA-HD-7229 TCGA-HD-7753 TCGA-HD-7754 TCGA-HD-7831 TCGA-HD-7832 TCGA-IQ-7630 
           2            5           25           NA           NA          160 
TCGA-IQ-7631 TCGA-IQ-7632 
         122          113 
Variable 1:'AGE':	nDistinctValues=56,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=115,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=190,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=20,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=95,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "PATHOLOGY.T"                           
[4] "PATHOLOGY.N"                           
[5] "PATHOLOGICSPREAD(M)"                   
[6] "RADIATIONS.RADIATION.REGIMENINDICATION"
[7] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 290 columns, 1 survival variables, and 7 non-survival variables.
AGE, nv=56, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 19  81  77 103 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 19  81  77 103 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
 19  81  77 103 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 19  81  77 103 
PATHOLOGY.N, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
113  44 108   4 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
113  44 108   4 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2  N3 
113  44 108   4 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
113  44 108   4 
PATHOLOGICSPREAD(M), nv=2, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = METHLYATION_CNMF
D1V1, survival
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [19] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [79] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[127] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[169] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[181] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[211] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[223] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[229] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[241] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[253] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[259] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[271] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[277] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[283] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [19] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [79] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[127] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[169] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[181] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[211] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[223] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[229] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[241] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[253] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[259] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[271] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[277] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[283] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
 [19] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [43] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [49] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
 [79] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[103] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[127] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[133] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[139] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[169] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[181] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[187] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[199] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[205] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[211] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[223] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[229] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[235] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[241] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[253] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[259] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[265] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[271] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[277] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[283] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
D1V2, continuous
D1V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   70   20
  subtype2   76   21
  subtype3   62   41
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       20       21       41
  MALE         70       76       62
D1V4, multiclass
D1V5, multiclass
D1V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   89    0
  subtype2   96    1
  subtype3  101    2
    clus
vv   subtype1 subtype2 subtype3
  M0       89       96      101
  M1        0        1        2
D1V7, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   67   23
  subtype2   70   27
  subtype3   75   28
     clus
vv    subtype1 subtype2 subtype3
  NO        23       27       28
  YES       67       70       75
D1V8, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   75
  subtype2   18   79
  subtype3   15   88
     clus
vv    subtype1 subtype2 subtype3
  NO        15       18       15
  YES       75       79       88

Clustering(2) Variable = MRNASEQ_CNMF
D2V1, survival
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [73] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[199] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[217] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[223] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [73] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[199] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[217] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[223] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
  [7] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [43] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [67] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [73] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
 [79] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [85] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [91] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[109] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[187] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[199] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[217] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[223] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
D2V2, continuous
D2V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   54   19
  subtype2   46   19
  subtype3   69   21
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       19       19       21
  MALE         54       46       69
D2V4, multiclass
D2V5, multiclass
D2V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   72    1
  subtype2   64    0
  subtype3   89    1
    clus
vv   subtype1 subtype2 subtype3
  M0       72       64       89
  M1        1        0        1
D2V7, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   55   18
  subtype2   45   20
  subtype3   66   24
     clus
vv    subtype1 subtype2 subtype3
  NO        18       20       24
  YES       55       45       66
D2V8, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   63
  subtype2   13   52
  subtype3   15   75
     clus
vv    subtype1 subtype2 subtype3
  NO        10       13       15
  YES       63       52       75

Clustering(3) Variable = MRNASEQ_CHIERARCHICAL
D3V1, survival
  [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [91] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[181] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[217] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
  [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [91] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[181] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[217] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
  [1] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [25] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [67] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [79] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
 [91] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[103] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[133] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[151] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[181] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[193] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[217] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[223] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
D3V2, continuous
D3V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   48   16
  subtype2   46   24
  subtype3   75   19
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       16       24       19
  MALE         48       46       75
D3V4, multiclass
D3V5, multiclass
D3V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   63    1
  subtype2   69    0
  subtype3   93    1
    clus
vv   subtype1 subtype2 subtype3
  M0       63       69       93
  M1        1        0        1
D3V7, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   46   18
  subtype2   50   20
  subtype3   70   24
     clus
vv    subtype1 subtype2 subtype3
  NO        18       20       24
  YES       46       50       70
D3V8, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   12   52
  subtype2   14   56
  subtype3   12   82
     clus
vv    subtype1 subtype2 subtype3
  NO        12       14       12
  YES       52       56       82

Clustering(4) Variable = MIRSEQ_CNMF
D4V1, survival
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[193] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[217] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[241] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[247] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[253] "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[193] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[217] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[241] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[247] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[253] "subtype3" "subtype1" "subtype2" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [85] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[169] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[193] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[211] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[217] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[241] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[247] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[253] "subtype3" "subtype1" "subtype2" "subtype1"
D4V2, continuous
D4V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   59   16
  subtype2   74   28
  subtype3   55   26
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       16       28       26
  MALE         59       74       55
D4V4, multiclass
D4V5, multiclass
D4V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   74    1
  subtype2  100    2
  subtype3   80    0
    clus
vv   subtype1 subtype2 subtype3
  M0       74      100       80
  M1        1        2        0
D4V7, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   53   22
  subtype2   75   27
  subtype3   55   26
     clus
vv    subtype1 subtype2 subtype3
  NO        22       27       26
  YES       53       75       55
D4V8, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11   64
  subtype2   19   83
  subtype3   17   64
     clus
vv    subtype1 subtype2 subtype3
  NO        11       19       17
  YES       64       83       64

Clustering(5) Variable = MIRSEQ_CHIERARCHICAL
D5V1, survival
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[169] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[187] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[217] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[235] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[241] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[169] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[187] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[217] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[235] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[241] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[133] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[157] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[169] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[187] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[193] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[199] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[205] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[211] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[217] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[229] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[235] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[241] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[247] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[253] "subtype3" "subtype2" "subtype2" "subtype2"
D5V2, continuous
D5V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10    3
  subtype2  108   37
  subtype3   70   30
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        3       37       30
  MALE         10      108       70
D5V4, multiclass
D5V5, multiclass
D5V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13    0
  subtype2  142    3
  subtype3   99    0
    clus
vv   subtype1 subtype2 subtype3
  M0       13      142       99
  M1        0        3        0
D5V7, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    4
  subtype2  105   40
  subtype3   69   31
     clus
vv    subtype1 subtype2 subtype3
  NO         4       40       31
  YES        9      105       69
D5V8, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   10
  subtype2   23  122
  subtype3   21   79
     clus
vv    subtype1 subtype2 subtype3
  NO         3       23       21
  YES       10      122       79
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
                           "PATHOLOGY.T" 
                                      V5 
                           "PATHOLOGY.N" 
                                      V6 
                   "PATHOLOGICSPREAD(M)" 
                                      V7 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V8 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
