
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Cnvsarms_onlysig.11.3769/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/146131/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/OV/1552286/1.GDAC_clinicalDataPicker.Finished/OV.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=OV", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"    "-oT=OV"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=580, in cluster file=558, common to both=552
[1]  78 552
[1] "1p gain mutation analysis"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              109               443 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              109               443 
[1] "1q gain mutation analysis"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              180               372 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              180               372 
[1] "2p gain mutation analysis"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              145               407 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              145               407 
[1] "2q gain mutation analysis"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              114               438 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              114               438 
[1] "3p gain mutation analysis"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
              110               442 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
              110               442 
[1] "3q gain mutation analysis"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              256               296 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              256               296 
[1] "4p gain mutation analysis"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               38               514 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               38               514 
[1] "4q gain mutation analysis"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               16               536 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               16               536 
[1] "5p gain mutation analysis"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              169               383 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              169               383 
[1] "5q gain mutation analysis"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               39               513 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               39               513 
[1] "6p gain mutation analysis"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              162               390 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              162               390 
[1] "6q gain mutation analysis"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               65               487 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               65               487 
[1] "7p gain mutation analysis"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              135               417 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              135               417 
[1] "7q gain mutation analysis"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              177               375 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              177               375 
[1] "8p gain mutation analysis"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               71               481 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               71               481 
[1] "8q gain mutation analysis"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              255               297 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              255               297 
[1] "9p gain mutation analysis"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               70               482 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               70               482 
[1] "9q gain mutation analysis"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               28               524 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               28               524 
[1] "10p gain mutation analysis"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               154                398 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               154                398 
[1] "10q gain mutation analysis"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                74                478 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                74                478 
[1] "11p gain mutation analysis"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                49                503 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                49                503 
[1] "11q gain mutation analysis"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                91                461 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                91                461 
[1] "12p gain mutation analysis"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               213                339 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               213                339 
[1] "12q gain mutation analysis"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               121                431 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               121                431 
[1] "13q gain mutation analysis"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                53                499 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                53                499 
[1] "14q gain mutation analysis"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                31                521 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                31                521 
[1] "15q gain mutation analysis"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                26                526 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                26                526 
[1] "16p gain mutation analysis"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                38                514 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                38                514 
[1] "16q gain mutation analysis"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                17                535 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                17                535 
[1] "17p gain mutation analysis"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                18                534 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                18                534 
[1] "17q gain mutation analysis"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                41                511 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                41                511 
[1] "18p gain mutation analysis"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                89                463 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                89                463 
[1] "18q gain mutation analysis"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                43                509 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                43                509 
[1] "19p gain mutation analysis"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
               114                438 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
               114                438 
[1] "19q gain mutation analysis"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                92                460 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                92                460 
[1] "20p gain mutation analysis"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               233                319 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               233                319 
[1] "20q gain mutation analysis"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               273                279 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               273                279 
[1] "21q gain mutation analysis"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                77                475 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                77                475 
[1] "22q gain mutation analysis"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                13                539 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                13                539 
[1] "1p loss mutation analysis"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               40               512 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               40               512 
[1] "1q loss mutation analysis"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               25               527 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               25               527 
[1] "2p loss mutation analysis"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               27               525 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               27               525 
[1] "2q loss mutation analysis"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               29               523 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               29               523 
[1] "3p loss mutation analysis"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               78               474 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               78               474 
[1] "3q loss mutation analysis"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               22               530 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               22               530 
[1] "4p loss mutation analysis"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              280               272 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              280               272 
[1] "4q loss mutation analysis"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              320               232 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              320               232 
[1] "5p loss mutation analysis"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
              100               452 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
              100               452 
[1] "5q loss mutation analysis"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              213               339 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              213               339 
[1] "6p loss mutation analysis"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              134               418 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              134               418 
[1] "6q loss mutation analysis"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              237               315 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              237               315 
[1] "7p loss mutation analysis"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
              106               446 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
              106               446 
[1] "7q loss mutation analysis"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               54               498 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               54               498 
[1] "8p loss mutation analysis"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              289               263 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              289               263 
[1] "8q loss mutation analysis"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               70               482 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               70               482 
[1] "9p loss mutation analysis"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              243               309 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              243               309 
[1] "9q loss mutation analysis"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              274               278 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              274               278 
[1] "10p loss mutation analysis"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                89                463 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                89                463 
[1] "10q loss mutation analysis"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               117                435 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               117                435 
[1] "11p loss mutation analysis"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               182                370 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               182                370 
[1] "11q loss mutation analysis"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               120                432 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               120                432 
[1] "12p loss mutation analysis"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                63                489 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                63                489 
[1] "12q loss mutation analysis"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                99                453 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                99                453 
[1] "13q loss mutation analysis"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               266                286 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               266                286 
[1] "14q loss mutation analysis"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               197                355 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               197                355 
[1] "15q loss mutation analysis"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               228                324 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               228                324 
[1] "16p loss mutation analysis"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               283                269 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               283                269 
[1] "16q loss mutation analysis"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               388                164 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               388                164 
[1] "17p loss mutation analysis"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               419                133 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               419                133 
[1] "17q loss mutation analysis"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               317                235 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               317                235 
[1] "18p loss mutation analysis"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               198                354 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               198                354 
[1] "18q loss mutation analysis"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               267                285 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               267                285 
[1] "19p loss mutation analysis"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               169                383 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               169                383 
[1] "19q loss mutation analysis"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               186                366 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               186                366 
[1] "20p loss mutation analysis"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                45                507 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                45                507 
[1] "20q loss mutation analysis"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                23                529 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                23                529 
[1] "21q loss mutation analysis"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               159                393 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               159                393 
[1] "22q loss mutation analysis"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               393                159 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               393                159 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                                      
 [2] "DAYSTODEATH"                                       
 [3] "DAYSTOLASTFOLLOWUP"                                
 [4] "VITALSTATUS"                                       
 [5] "DCCUPLOADDATE"                                     
 [6] "PRIMARYSITEOFDESEASE"                              
 [7] "GENDER"                                            
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"                  
 [9] "RADIATIONTHERAPY"                                  
[10] "KARNOFSKYPERFORMANCESCORE"                         
[11] "EXAMINATIONS.EXAMINATION.KARNOFSKYPERFORMANCESCORE"
[12] "HISTOLOGICALTYPE"                                  
[13] "TUMORGRADE"                                        
[14] "PATIENTTUMORRECURRENCESTATUS"                      
[15] "DAYSTOTUMORRECURRENCE"                             
[16] "CHEMOTHERAPY"                                      
[17] "RADIATIONS.RADIATION.REGIMENINDICATION"            
[18] "NEOADJUVANTTHERAPY"                                
[19] "BATCHNUMBER"                                       

Input Data has 19 rows and 552 columns.

[1] "Batch" "19"   
[1] "Last Follow UP"
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
        1224         1247           55         1495           61         1418 
TCGA-04-1341 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 
          NA          563          361         1992         1918         1483 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1357 TCGA-04-1360 
         656         1946         1991         1499           NA           NA 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
         989         1348         1024         2328         2174         2505 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1519 TCGA-04-1525 TCGA-04-1530 
        1720         1265          608           NA         1167         3622 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
         884         2561         1685         1487          848          871 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
        1966         1102          969         1451         1379          887 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
         288         1756          546         1081          303         1169 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
        2717         2278         1265         1751         1882         1684 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
         927          547          178           92          260         2967 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
         187          186         1069          137         3418         2163 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
        1919         1209          636          819          379         1652 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
         788         2478          562         1011          982          356 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
         118         1077         1089          460          604          189 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
         748         1355         1204           83          377          945 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
         462          541         1678           75          340          346 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
         351         1036          981          944          651          256 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
        1184         1117          873          923          595          265 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
         237          247          252          249         1333         1073 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
        1073          414         2096         3260         2780         2259 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
        2027         2141         1880         2068         2099         1319 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
        1748         1708         1736          589         1441         1470 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
        1455         1367         1364         1128          842         1036 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
         912          643          453          420          141          195 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
         185          331          201          224          184          180 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
         208          143          128          162         1661         2648 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
        1877          894         2982          629          681         2154 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
        2521         1595         2237         1161         1497          129 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
        1652         1144         1167          425          999          504 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
         128          134          145          126           78          118 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
          94          433          372          261          328          266 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
         191          701          789          797         2196          836 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
         772          580          507           89           81         1446 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
        1293         1233          468          816          965         1503 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
         268          885          574           68         1562         1658 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
          98          949         2089          139         1013         2616 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
        3953          130          194         1189         1018         1768 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
          16          759         3525         2661         2788         2342 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
        1516           84          143          137          232          597 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
         354          663         1264          233          679         1645 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
        1933         1442          192          194          238          243 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
         239           23          190          183          181          163 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
         146          528          862          583          568         1324 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
         260         2218          379         1373         3224          277 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
         104           36          675          820         1745         1955 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
         493         1721         1249         1579         1259         1767 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
        2692         2148         1213          594         1341         1384 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
        1451          787          312          524         2742         2687 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
        1470         1163          253          106          113          116 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
         133          343          175          167          298          689 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
         919          499          336         2467          148         4623 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
        1364         1769         1059         3336          439         1641 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
         562          857         1947         1353         1736         1100 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
          24           11         1446          962         2143         1356 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
          25         2049         1102          506         1007         1699 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
        1620           31          819          973         1553         1126 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
          31         1064         1977         1124         1033           91 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
         365           90          565          548          480           11 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
         626          239            9         1732         1843         1081 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
        1558          454          760          549         2587          396 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
        1492           31         1157           92          365         1369 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
         608         1278           90          882          942          820 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
        2399         1360         1435         3095         1172           24 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
        1025          948         2077           16          514          567 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
        1815          555         1276          889         1053          517 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
        2606         2031         1914         1189          950          699 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
         741          685          526          376          360          374 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
         454          254          219          163         1053         2621 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
        1977         1900         1372          148         1285          360 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
         349          297         1158         1579         1103           75 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
         477            8         1462         1366         1058          185 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
        1114           36         1751          738          914         1484 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
        1386          918          571          683          204         1293 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
        1341           66          874          884          655          695 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
         686          260          914          783          847          737 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2533 TCGA-36-2534 
         751         1066         1004          897           NA          906 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
         788          763          724          657           68          638 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
         557          624          431          491          349          435 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-42-2593 TCGA-57-1582 
         287          230          227          232           NA          731 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
         346          643           53          679          881          762 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
         761         5480         2437          679         3532          286 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
        1046           65          164         1362          338          245 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
         637          955          564          848          132          966 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
         866         1484         1364         1089           74         1024 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
        1329           43          256          176          347          396 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
         276         1038          952         1126         1292         1488 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
        1721         2060         1321          479         1161           60 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
         168          441          547          121          931         1212 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
         932           36         1398         1381          146          145 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
        1573         2182         1875         1776         1844         1992 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
        1688          197         2337          629         1354         3824 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
         676         1579          483          193          945          261 
Variable 1:'AGE':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=263,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=471,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'RADIATION.THERAPY':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'EXAMINATIONS.EXAMINATION.KARNOFSKYPERFORMANCESCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'TUMOR.GRADE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'PATIENTTUMORRECURRENCESTATUS':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'DAYSTOTUMORRECURRENCE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'CHEMOTHERAPY':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'BATCH.NUMBER':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "PRIMARY.SITE.OF.DISEASE"               
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "RADIATIONS.RADIATION.REGIMENINDICATION"
[5] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 552 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=55, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=3, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=4, binary=FALSE, numeric=TRUE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain mutation analysis
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    47  62
  1P GAIN WILD-TYPE 214 223
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              109               437 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               62               223 
$`1P GAIN MUTATED`
TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1356 TCGA-04-1516 TCGA-04-1517 
       18.51        65.49        63.06        49.28        41.59        19.99 
TCGA-04-1525 TCGA-04-1649 TCGA-09-0366 TCGA-09-1659 TCGA-09-1670 TCGA-09-2045 
       38.37        64.64        57.73         9.96        17.98        35.15 
TCGA-09-2051 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 TCGA-13-0726 TCGA-13-0751 
       63.09        24.59        39.58         2.73        31.07        55.17 
TCGA-13-0760 TCGA-13-0888 TCGA-13-0893 TCGA-13-0911 TCGA-13-0923 TCGA-13-1408 
       11.54        70.39        43.36        27.68         6.41         5.92 
TCGA-13-1410 TCGA-13-1496 TCGA-13-1506 TCGA-13-2065 TCGA-20-0987 TCGA-20-0990 
        4.70         4.24         4.41         8.75        23.05        25.94 
TCGA-20-0991 TCGA-20-1685 TCGA-23-1031 TCGA-23-1114 TCGA-23-1117 TCGA-23-1124 
       26.20        16.67        18.87        68.68        33.30        58.13 
TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-23-2084 TCGA-24-1417 TCGA-24-1431 
        0.53       115.89        91.66        49.84         7.82        19.17 
TCGA-24-1436 TCGA-24-1466 TCGA-24-1471 TCGA-24-1474 TCGA-24-1557 TCGA-24-1558 
        8.55        45.14         1.18        22.19        39.88        19.53 
TCGA-24-1560 TCGA-24-1564 TCGA-24-1565 TCGA-24-1616 TCGA-24-1845 TCGA-24-1924 
       44.09        25.87        10.26        38.24         3.81        30.21 
TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 TCGA-24-2038 TCGA-24-2271 TCGA-24-2280 
       34.82        14.43        53.95        44.48        31.63        70.45 
TCGA-24-2290 TCGA-24-2295 TCGA-25-1312 TCGA-25-1313 TCGA-25-1323 TCGA-25-1329 
       36.23        33.11         1.02        26.93        12.00         2.96 
TCGA-25-1627 TCGA-25-1877 TCGA-25-2392 TCGA-29-1701 TCGA-29-1707 TCGA-29-1763 
        0.36        18.05         1.02        16.90        41.95        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 TCGA-29-1783 TCGA-29-1784 TCGA-29-2425 
       62.93        39.09        22.98         7.20         5.36        65.00 
TCGA-29-2432 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1862 
       11.84        38.07        51.91         2.47        15.68         6.08 
TCGA-30-1867 TCGA-31-1959 TCGA-36-1571 TCGA-36-1577 TCGA-36-1578 TCGA-36-2529 
        1.18         2.17        22.85        25.74        27.85        35.05 
TCGA-36-2534 TCGA-36-2551 TCGA-57-1585 TCGA-59-2351 TCGA-59-2355 TCGA-61-1730 
       29.79        16.14         1.74       116.12         2.14         4.34 
TCGA-61-1733 TCGA-61-1737 TCGA-61-1740 TCGA-61-1899 TCGA-61-1911 TCGA-61-2009 
       31.76        44.84         2.43         8.42        42.48        39.85 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2097 TCGA-61-2102 TCGA-61-2104 TCGA-61-2111 
        4.77        51.72        60.62         6.48        76.83       125.72 
TCGA-61-2614 
        8.58 

$`1P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1361 
       11.87        48.76        21.57        63.98        65.46        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       44.32        33.67        76.54        71.47        82.36        56.55 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       28.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
        9.47        17.95        35.54        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1672 
       41.59        57.57        61.87        55.36        30.48         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2048 
        3.02         8.55        97.55         6.15         6.12         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
      112.37        71.11        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0720 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 
        6.21        44.55        12.39        15.19        17.79         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       11.18        11.38        34.06        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       35.28        35.28        13.61        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 
       74.27        66.64        61.81        67.99        69.01        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.94        44.84        37.08        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       14.89        13.81         4.64         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        7.36         6.05         6.84         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       70.82        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.21         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2071 TCGA-20-0996 
       14.24        12.23         8.58        10.78         6.28        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       27.48        25.38        19.07         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
        8.81        29.10         2.24        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1116 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
       31.20         4.57        86.01       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2078 TCGA-23-2081 TCGA-23-2641 
       39.09        33.47        24.95        87.48        77.00         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.31         6.38         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        6.02         5.95         5.36         4.80        17.36        28.34 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 
       18.67        43.53        72.92        12.46       105.99         9.11 
TCGA-24-1470 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        3.42        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       45.50        47.70        17.23        90.15        88.34        48.33 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
        8.32         3.48         3.72         4.37        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        5.49         9.80        22.65        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2033 
        4.87       151.99        44.84        58.16       109.68        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       28.18        64.01        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2293 TCGA-24-2297 
       47.54        44.58         0.82        67.36        16.64        55.86 
TCGA-24-2298 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       53.26        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1623 TCGA-25-1625 
       65.00        36.95        33.96         2.99        18.58        18.02 
TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
       15.78        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 
       35.54        51.22        14.93        24.99        85.05        13.02 
TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       49.05        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       44.71        47.18       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       31.17        68.28         0.53        18.64        59.67        18.25 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1768 TCGA-29-1770 
       29.23        34.62        17.00        85.68        31.23        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
        8.35        34.62        86.17        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1853 TCGA-30-1857 TCGA-30-1859 
       42.25        11.47         9.76        36.26         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
       44.91        34.78        36.62        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 
       42.51        44.09        28.73        29.06        21.53        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 
        8.55        30.05        24.23        24.69        33.01        29.49 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 
       18.31        20.52        14.17        11.47        14.30         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.56         7.46         7.63        24.03        11.38        21.14 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
       22.32         9.40        34.39         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1734 
        8.05        20.94        31.40        18.54        27.88        28.47 
TCGA-61-1736 TCGA-61-1738 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1900 
       48.79        35.80        33.67        43.69         1.41         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
       11.41        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       48.92        56.58        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
        1.97         5.52        14.50        17.98         3.98        30.61 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2094 
       30.64         1.18        45.96        45.40         4.80        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2109 TCGA-61-2110 
       61.64        58.39        65.49        55.50        20.68        44.52 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
       22.22        51.91        15.88         6.35        31.07 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.36              0.26 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           125.72            180.16 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            25.94             28.96 
[1] "0.4 - 125.7 (25.9)" "0.3 - 180.2 (29.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
[1] "hr=" "1.2"
D1V2, continuous
D1V3, multiclass
                    clus
vv                   1P GAIN MUTATED 1P GAIN WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          106               442
  PERITONEUM (OVARY)               2                 0
D1V4, continuous
D1V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      2  107
  1P GAIN WILD-TYPE    1  442
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                2                 1
  YES             107               442
D1V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     87   22
  1P GAIN WILD-TYPE  361   82
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO               87               361
  YES              22                82

Clustering(2) Variable = 1q gain mutation analysis
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED    78 101
  1Q GAIN WILD-TYPE 183 184
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              179               367 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              101               184 
$`1Q GAIN MUTATED`
TCGA-04-1331 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1356 TCGA-04-1364 
       40.24        18.51        65.49        63.06        49.28        33.67 
TCGA-04-1516 TCGA-04-1525 TCGA-04-1542 TCGA-04-1649 TCGA-04-1655 TCGA-09-0365 
       41.59        38.37        84.20        64.64        45.34         9.47 
TCGA-09-0366 TCGA-09-1659 TCGA-09-1661 TCGA-09-1665 TCGA-09-1670 TCGA-09-1674 
       57.73         9.96        38.43        41.59        17.98         8.55 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2051 TCGA-09-2054 TCGA-09-2056 
       35.15         4.50       112.37        63.09        20.91        12.46 
TCGA-10-0925 TCGA-10-0933 TCGA-10-0936 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 
       54.31        11.70        35.80        24.59        39.58         2.73 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 TCGA-13-0760 TCGA-13-0762 TCGA-13-0799 
       31.07        15.19        55.17        11.54        32.25         7.79 
TCGA-13-0800 TCGA-13-0888 TCGA-13-0899 TCGA-13-0901 TCGA-13-0910 TCGA-13-0911 
        8.12        70.39        56.15        19.36        37.08        27.68 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
       13.81         4.64         6.41         5.92         6.84         4.70 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1506 TCGA-13-2057 TCGA-13-2065 TCGA-20-0987 
       98.04        20.68         4.41        14.24         8.75        23.05 
TCGA-20-0991 TCGA-20-1683 TCGA-20-1684 TCGA-23-1024 TCGA-23-1030 TCGA-23-1031 
       26.20        25.38        19.07        15.39        29.10        18.87 
TCGA-23-1114 TCGA-23-1117 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2643 
       68.68        33.30        58.13         0.53       115.89         4.70 
TCGA-24-0982 TCGA-24-1413 TCGA-24-1423 TCGA-24-1431 TCGA-24-1436 TCGA-24-1466 
       22.32         6.31         6.25        19.17         8.55        45.14 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1553 TCGA-24-1557 TCGA-24-1558 
        1.18        22.19        26.96        58.09        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 
       44.09        45.50        25.87        10.26        90.15        88.34 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1845 TCGA-24-1924 TCGA-24-1930 TCGA-24-2020 
       38.24         8.32         3.81        30.21        81.11       151.99 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 TCGA-24-2036 TCGA-24-2038 
       58.16        34.82        14.43        53.95        64.01        44.48 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2290 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 
       31.63        70.45        36.23        26.93        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1323 
        1.02        34.98        65.00        36.95        33.96        12.00 
TCGA-25-1329 TCGA-25-1627 TCGA-25-1633 TCGA-25-1634 TCGA-25-1871 TCGA-25-1877 
        2.96         0.36        60.59        35.54        24.99        18.05 
TCGA-25-2392 TCGA-25-2396 TCGA-29-1688 TCGA-29-1693 TCGA-29-1695 TCGA-29-1696 
        1.02         3.02        78.87       101.75         0.79        33.70 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1710 TCGA-29-1711 TCGA-29-1763 TCGA-29-1764 
       16.90        18.64        29.23        34.62        66.77        62.93 
TCGA-29-1766 TCGA-29-1769 TCGA-29-1774 TCGA-29-1775 TCGA-29-1778 TCGA-29-1783 
       39.09        22.98        17.29        12.36        14.93         7.20 
TCGA-29-1784 TCGA-29-2414 TCGA-29-2425 TCGA-29-2432 TCGA-29-2434 TCGA-30-1714 
        5.36        86.17        65.00        11.84        11.47        38.07 
TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1862 TCGA-30-1867 TCGA-31-1956 
       51.91         2.47        15.68         6.08         1.18        44.09 
TCGA-31-1959 TCGA-36-1569 TCGA-36-1571 TCGA-36-1581 TCGA-36-2529 TCGA-36-2552 
        2.17        29.06        22.85        24.69        35.05        11.47 
TCGA-42-2590 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-59-2348 TCGA-59-2351 
        7.46        11.38         1.74        22.32       180.16       116.12 
TCGA-59-2355 TCGA-59-2372 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1740 
        2.14        44.78         4.34        31.76        28.47         2.43 
TCGA-61-1743 TCGA-61-1899 TCGA-61-1903 TCGA-61-1904 TCGA-61-1911 TCGA-61-2003 
       43.69         8.42        13.02         9.07        42.48         3.98 
TCGA-61-2009 TCGA-61-2088 TCGA-61-2092 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       39.85         4.77        51.72        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2111 TCGA-61-2614 
       55.50         6.48        76.83       125.72         8.58 

$`1Q GAIN WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 
       41.00         1.81        49.15         2.01        46.62        11.87 
TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 
       48.76        21.57        63.98        65.46        32.52        44.32 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1530 
       76.54        71.47        82.36        56.55        19.99       119.08 
TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1651 
       29.06        55.40        48.89        27.88        28.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0367 TCGA-09-0369 TCGA-09-1662 
       31.86        47.70        29.16        17.95        35.54        89.33 
TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1672 
       74.89        57.57        61.87        55.36        30.48         5.85 
TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2050 TCGA-09-2053 
        3.02        97.55         6.15         6.12        71.11        39.75 
TCGA-09-2055 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       26.93        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 
        3.88        35.41        15.12        19.86         6.21        44.55 
TCGA-13-0725 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 
       12.39        17.79         2.47        11.18        11.38        34.06 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
       30.35        19.56         8.71         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       35.28        35.28        13.61        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       74.27        66.64        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       57.47        57.07        47.38        48.33        47.84        44.94 
TCGA-13-0908 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0924 
       44.84        34.06        29.98        21.14        14.89         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1411 TCGA-13-1412 
       10.88         6.61         7.36         6.05         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1487 TCGA-13-1488 
       54.61        87.06        61.71        29.39        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       82.88        52.44        73.55        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.21         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2071 TCGA-20-0990 TCGA-20-0996 
       12.23         8.58        10.78         6.28        25.94        72.20 
TCGA-20-1682 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
       27.48        16.67         2.93         2.66        47.54        42.51 
TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1032 
       40.54        26.83        31.73        49.41         8.81         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1118 
       51.35        54.51         3.22        31.20         4.57        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 
      129.96         4.27         6.38        39.09        33.47        24.95 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 
       87.48        91.66        77.00        49.84         2.76         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       54.08        63.55        47.41         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        7.86         0.76         6.02         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 
       17.36        28.34        18.67        43.53        72.92        12.46 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 
      105.99         9.11         3.42        57.37        64.27        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1556 
       56.58        41.06        51.91        41.39        88.50        70.62 
TCGA-24-1563 TCGA-24-1567 TCGA-24-1614 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 
       47.70        17.23        48.33         3.48         3.72         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 
       11.28         5.75         5.49         9.80        22.65        16.41 
TCGA-24-1928 TCGA-24-2019 TCGA-24-2023 TCGA-24-2027 TCGA-24-2033 TCGA-24-2035 
       11.05         4.87        44.84       109.68        18.48        28.18 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2281 
       57.07        36.16         0.79         0.36        47.54        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
        0.82        67.36        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1314 TCGA-25-1322 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        1.02        31.99         2.99        18.58        18.02        15.78 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1635 TCGA-25-1870 
       20.58         7.86         0.30        56.94        51.22        14.93 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 
       85.05        13.02        49.05        38.04        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       44.71        47.18        38.53        31.17        68.28         0.53 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1761 TCGA-29-1762 TCGA-29-1768 
       59.67        18.25        41.95        17.00        85.68        31.23 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1785 
       24.36        22.52        11.84        12.30         8.35        34.62 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2436 TCGA-30-1853 
       62.47        45.11         4.87        42.25         9.76        36.26 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 
        0.26        48.07        44.91        34.78        36.62        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-36-1568 TCGA-36-1570 TCGA-36-1574 
       22.45         6.71        42.51        28.73        21.53        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2530 
        8.55        30.05        25.74        27.85        24.23        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 
        2.24        20.98        18.31        20.52        14.17        16.14 
TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 
       14.30         9.44         7.56         7.63        24.03        21.14 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 
       28.96        25.05        25.02        80.12        22.32         9.40 
TCGA-59-2354 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
       34.39         5.39        11.11         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1741 
       18.54        27.88        48.79        44.84        35.80        33.67 
TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        1.41         5.79        11.41        34.13        31.30        37.02 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       48.92        56.58        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2012 
        1.97         5.52        14.50        17.98        30.61        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2094 TCGA-61-2095 
        1.18        45.96        45.40         4.80        71.74        61.64 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       20.68        44.52        22.22        51.91        15.88         6.35 
TCGA-61-2613 
       31.07 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.36              0.26 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           180.16            129.96 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            26.96             28.70 
[1] "0.4 - 180.2 (27.0)" "0.3 - 130.0 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
[1] "hr=" "1"  
D2V2, continuous
D2V3, multiclass
                    clus
vv                   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          177               371
  PERITONEUM (OVARY)               2                 0
D2V4, continuous
D2V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      1  179
  1Q GAIN WILD-TYPE    2  370
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO                1                 2
  YES             179               370
D2V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED    146   34
  1Q GAIN WILD-TYPE  302   70
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO              146               302
  YES              34                70

Clustering(3) Variable = 2p gain mutation analysis
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED    66  79
  2P GAIN WILD-TYPE 195 206
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              145               401 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               79               206 
$`2P GAIN MUTATED`
TCGA-04-1336 TCGA-04-1342 TCGA-04-1347 TCGA-04-1350 TCGA-04-1356 TCGA-04-1364 
       49.15        18.51        63.06        63.98        49.28        33.67 
TCGA-04-1371 TCGA-04-1646 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       82.36        27.88        45.34        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1661 TCGA-09-1665 TCGA-09-1672 TCGA-09-1674 
       17.95        35.54        38.43        41.59         5.85         8.55 
TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 TCGA-09-2054 TCGA-10-0927 TCGA-10-0930 
        6.15        35.15         4.50        20.91        81.47        33.24 
TCGA-10-0933 TCGA-10-0935 TCGA-13-0724 TCGA-13-0730 TCGA-13-0760 TCGA-13-0800 
       11.70        35.41         2.73        17.79        11.54         8.12 
TCGA-13-0802 TCGA-13-0885 TCGA-13-0888 TCGA-13-0893 TCGA-13-0899 TCGA-13-0901 
        8.19        91.40        70.39        43.36        56.15        19.36 
TCGA-13-0906 TCGA-13-0913 TCGA-13-0921 TCGA-13-1407 TCGA-13-1409 TCGA-13-1412 
       44.94        29.98         4.64         6.05         6.84         5.33 
TCGA-13-1505 TCGA-13-1506 TCGA-13-2057 TCGA-13-2060 TCGA-20-1686 TCGA-23-1021 
        4.21         4.41        14.24         8.58         2.93        47.54 
TCGA-23-1024 TCGA-23-1029 TCGA-23-1114 TCGA-23-1121 TCGA-23-1124 TCGA-23-1809 
       15.39         8.81        68.68         6.38        58.13         0.53 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2643 TCGA-23-2645 TCGA-24-0970 TCGA-24-1422 
       87.48        91.66         4.70         4.50        11.64         0.76 
TCGA-24-1424 TCGA-24-1428 TCGA-24-1436 TCGA-24-1467 TCGA-24-1469 TCGA-24-1474 
        6.02        17.36         8.55       105.99         9.11        22.19 
TCGA-24-1544 TCGA-24-1550 TCGA-24-1552 TCGA-24-1553 TCGA-24-1556 TCGA-24-1560 
       26.96        41.06        41.39        58.09        70.62        44.09 
TCGA-24-1604 TCGA-24-1616 TCGA-24-1845 TCGA-24-1850 TCGA-24-2019 TCGA-24-2029 
       88.34        38.24         3.81         5.49         4.87        14.43 
TCGA-24-2033 TCGA-24-2261 TCGA-24-2289 TCGA-24-2295 TCGA-25-1312 TCGA-25-1315 
       18.48         0.79        67.36        33.11         1.02        51.06 
TCGA-25-1317 TCGA-25-1319 TCGA-25-1323 TCGA-25-1329 TCGA-25-1626 TCGA-25-1628 
        1.02        65.00        12.00         2.96        15.78        20.58 
TCGA-25-1634 TCGA-25-1870 TCGA-25-1877 TCGA-25-2391 TCGA-25-2393 TCGA-25-2398 
       35.54        14.93        18.05        49.05        38.04        45.01 
TCGA-25-2409 TCGA-29-1695 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 TCGA-29-1764 
       26.96         0.79        68.28        16.90        18.64        62.93 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1778 TCGA-29-2425 TCGA-29-2429 TCGA-30-1714 
       17.29        12.36        14.93        65.00         4.87        38.07 
TCGA-30-1718 TCGA-30-1859 TCGA-30-1862 TCGA-30-1867 TCGA-31-1950 TCGA-31-1953 
       51.91        48.07         6.08         1.18        18.77         6.71 
TCGA-31-1959 TCGA-36-1571 TCGA-36-1575 TCGA-36-1578 TCGA-36-2530 TCGA-36-2552 
        2.17        22.85         8.55        27.85        33.01        11.47 
TCGA-42-2589 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-57-1994 TCGA-59-2348 
        7.56        11.38         1.74        22.32        25.02       180.16 
TCGA-59-2372 TCGA-61-1725 TCGA-61-1730 TCGA-61-1733 TCGA-61-1899 TCGA-61-1900 
       44.78        31.40         4.34        31.76         8.42         5.79 
TCGA-61-1907 TCGA-61-1915 TCGA-61-1918 TCGA-61-2000 TCGA-61-2009 TCGA-61-2018 
       31.30        67.73        15.75        14.50        39.85        45.40 
TCGA-61-2088 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2612 
        4.77        60.62        65.49        55.50         6.48         6.35 
TCGA-61-2614 
        8.58 

$`2P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00         1.81         2.01        46.62        11.87 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 
       65.49        48.76        21.57        65.46        32.52        44.32 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       76.54        71.47        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
      119.08        29.06        84.20        55.40        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-1659 TCGA-09-1662 
       64.64        36.23        31.86        47.70         9.96        89.33 
TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       74.89        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1673 TCGA-09-1675 TCGA-09-2044 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        3.02        97.55         6.12       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 
       39.75        26.93        12.46        54.31        25.91        18.48 
TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
       32.28         3.88        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       24.59        44.55        39.58        12.39        31.07        15.19 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 
       55.17         2.47        11.18        11.38        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0803 
       30.35        19.56         8.71         7.79         8.28        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 
       35.28        35.28        13.61        68.91       107.18        74.27 
TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0900 
       66.64        61.81        67.99        69.01        57.47        57.07 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        47.84        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 
       34.06        21.14        14.89        13.81         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 
       10.88         6.61         7.36         5.92         4.70         4.21 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       22.39        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       32.84        16.57         4.77         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
        3.09        12.23        10.78         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       25.94        26.20        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 
       16.67         2.66        42.51        40.54        26.83        31.73 
TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
       49.41        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
        3.22        31.20         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2077 TCGA-23-2081 
        4.27        39.09        33.47        24.95       115.89        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 TCGA-24-0975 TCGA-24-0979 
       49.84         2.76         7.63        19.63        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1423 TCGA-24-1425 
        6.38         7.82         7.99         7.86         6.25         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        5.36         4.80        28.34        19.17        18.67        43.53 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1470 TCGA-24-1471 TCGA-24-1545 
       72.92        12.46        45.14         3.42         1.18        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1551 TCGA-24-1555 TCGA-24-1557 
       64.27        16.21        56.58        51.91        88.50        39.88 
TCGA-24-1558 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       19.53        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 
       90.15        48.33         8.32         3.48         3.72         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
       11.28         5.75         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       11.05        81.11       151.99        44.84        58.16        34.82 
TCGA-24-2027 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
      109.68        53.95        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
       36.16         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 
        0.82        36.23        16.64        55.86        53.26        26.93 
TCGA-25-1314 TCGA-25-1316 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
       31.99        37.02        34.98        36.95        33.96         2.99 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       18.58        18.02         0.36         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1635 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2392 
       60.59        51.22        24.99        85.05        13.02         1.02 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 
        3.02        12.00        19.99        42.02         2.96        29.00 
TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       30.97        78.87        44.71        47.18       101.75        38.53 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       33.70        31.17         0.53        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 
       29.23        34.62        17.00        85.68        66.77        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1776 TCGA-29-1777 
       31.23        22.98        24.36        22.52        11.84        12.30 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 
        8.35         7.20         5.36        34.62        86.17        62.47 
TCGA-29-2428 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1853 
       45.11        42.25        11.84        11.47         9.76        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 
        2.47        15.68         0.26        44.91        34.78        36.62 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       22.45        42.51        44.09        28.73        29.06        21.53 
TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       22.55        30.05        25.74        24.23        24.69        35.05 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 
        2.24        20.98        18.31        20.52        14.17        16.14 
TCGA-42-2582 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 
       14.30         9.44         7.46         7.63        24.03        21.14 
TCGA-57-1992 TCGA-57-1993 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       28.96        25.05        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
       34.39         2.14         5.39        11.11         8.05        20.94 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       18.54        27.88        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1901 TCGA-61-1903 
        2.43        33.67        43.69         1.41        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
        9.07        34.13        37.02        42.48        48.92        56.58 
TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2002 TCGA-61-2003 
       43.43        38.17         1.97         5.52        17.98         3.98 
TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 TCGA-61-2092 
       30.61        30.64         1.18        45.96         4.80        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       71.74        61.64        58.39        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 
      125.72        22.22        51.91        15.88        31.07 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.53              0.26 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           180.16            151.99 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            18.77             29.49 
[1] "0.5 - 180.2 (18.8)" "0.3 - 152.0 (29.5)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
[1] "hr=" "1.2"
D3V2, continuous
D3V3, multiclass
                    clus
vv                   2P GAIN MUTATED 2P GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          145               403
  PERITONEUM (OVARY)               0                 2
D3V4, continuous
D3V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      1  144
  2P GAIN WILD-TYPE    2  405
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                1                 2
  YES             144               405
D3V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED    116   29
  2P GAIN WILD-TYPE  332   75
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO              116               332
  YES              29                75

Clustering(4) Variable = 2q gain mutation analysis
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    48  64
  2Q GAIN WILD-TYPE 213 221
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              112               434 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               64               221 
$`2Q GAIN MUTATED`
TCGA-04-1336 TCGA-04-1350 TCGA-04-1356 TCGA-04-1364 TCGA-04-1516 TCGA-04-1646 
       49.15        63.98        49.28        33.67        41.59        27.88 
TCGA-04-1649 TCGA-04-1655 TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 TCGA-09-1661 
       64.64        45.34         9.47        17.95        35.54        38.43 
TCGA-09-1665 TCGA-09-1672 TCGA-09-1674 TCGA-09-2048 TCGA-09-2049 TCGA-10-0927 
       41.59         5.85         8.55         4.50       112.37        81.47 
TCGA-10-0930 TCGA-10-0933 TCGA-10-0935 TCGA-13-0724 TCGA-13-0730 TCGA-13-0751 
       33.24        11.70        35.41         2.73        17.79        55.17 
TCGA-13-0760 TCGA-13-0883 TCGA-13-0885 TCGA-13-0888 TCGA-13-0901 TCGA-13-1407 
       11.54        68.91        91.40        70.39        19.36         6.05 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1496 TCGA-13-1505 
        6.84         4.70         4.21         5.33         4.24         4.21 
TCGA-13-1511 TCGA-13-2057 TCGA-13-2060 TCGA-23-1021 TCGA-23-1024 TCGA-23-1111 
        3.88        14.24         8.58        47.54        15.39         3.22 
TCGA-23-1114 TCGA-23-1121 TCGA-23-1124 TCGA-23-1809 TCGA-23-2643 TCGA-24-1422 
       68.68         6.38        58.13         0.53         4.70         0.76 
TCGA-24-1424 TCGA-24-1430 TCGA-24-1436 TCGA-24-1467 TCGA-24-1469 TCGA-24-1474 
        6.02        28.34         8.55       105.99         9.11        22.19 
TCGA-24-1544 TCGA-24-1553 TCGA-24-1556 TCGA-24-1560 TCGA-24-1604 TCGA-24-1616 
       26.96        58.09        70.62        44.09        88.34        38.24 
TCGA-24-1844 TCGA-24-1845 TCGA-24-2033 TCGA-24-2261 TCGA-24-2289 TCGA-24-2295 
        3.72         3.81        18.48         0.79        67.36        33.11 
TCGA-25-1314 TCGA-25-1317 TCGA-25-1319 TCGA-25-1321 TCGA-25-1323 TCGA-25-1626 
       31.99         1.02        65.00        33.96        12.00        15.78 
TCGA-25-1634 TCGA-25-1870 TCGA-25-1877 TCGA-29-1695 TCGA-29-1696 TCGA-29-1764 
       35.54        14.93        18.05         0.79        33.70        62.93 
TCGA-29-1775 TCGA-29-1778 TCGA-29-2425 TCGA-29-2429 TCGA-30-1714 TCGA-30-1718 
       12.36        14.93        65.00         4.87        38.07        51.91 
TCGA-30-1859 TCGA-30-1862 TCGA-30-1867 TCGA-31-1950 TCGA-31-1959 TCGA-36-1578 
       48.07         6.08         1.18        18.77         2.17        27.85 
TCGA-36-2530 TCGA-36-2552 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-57-1994 
       33.01        11.47        11.38         1.74        22.32        25.02 
TCGA-59-2348 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1743 TCGA-61-1899 
      180.16         4.34        31.76        28.47        43.69         8.42 
TCGA-61-1900 TCGA-61-1915 TCGA-61-2018 TCGA-61-2088 TCGA-61-2097 TCGA-61-2098 
        5.79        67.73        45.40         4.77        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2612 TCGA-61-2614 
       55.50         6.48         6.35         8.58 

$`2Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 
       11.87        65.49        63.06        48.76        21.57        65.46 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       32.52        44.32        76.54        71.47        82.36        56.55 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 
       19.99        38.37       119.08        29.06        84.20        55.40 
TCGA-04-1644 TCGA-04-1648 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 
       48.89        28.64        36.23        31.86        47.70        29.16 
TCGA-09-0366 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 
       57.73         9.96        89.33        74.89        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 
       55.36        30.48        17.98         3.02        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        6.12        35.15        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 TCGA-10-0931 
       26.93        12.46        54.31        25.91        18.48        32.28 
TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
        3.88        35.80        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0755 
       44.55        39.58        12.39        31.07        15.19         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       11.18        11.38        34.06        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 
       35.28        35.28        13.61       107.18        74.27        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 
       61.81        67.99        69.01        43.36        57.47        56.15 
TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       57.07        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       13.81         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1408 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        7.36         5.92        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       73.55        38.17        49.22        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       13.97        32.84        16.57         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        2.56         3.09        12.23        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 
       19.07        16.67         2.93         2.66        42.51        40.54 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 
        2.24        51.35        54.51        31.20         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 
       86.01       129.96         4.27        39.09        33.47        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1423 TCGA-24-1425 
        6.38         7.82         7.99         7.86         6.25         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        5.36         4.80        17.36        19.17        18.67        43.53 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1470 TCGA-24-1471 TCGA-24-1545 
       72.92        12.46        45.14         3.42         1.18        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       88.50        39.88        19.53        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 
       10.26        17.23        90.15        48.33         8.32         3.48 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       30.21        16.41        11.05        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 
       28.18        64.01        44.48        57.07        36.16         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 
       47.54        31.63        70.45        44.58         0.82        36.23 
TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 
       16.64        55.86        53.26         1.02        26.93        51.06 
TCGA-25-1316 TCGA-25-1318 TCGA-25-1320 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 
       37.02        34.98        36.95         2.99         2.96        18.58 
TCGA-25-1625 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       18.02         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1635 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       60.59        51.22        24.99        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1697 TCGA-29-1698 
       44.71        47.18       101.75        38.53        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 
       29.23        34.62        17.00        85.68        66.77        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 
       31.23        22.98        24.36        22.52        17.29        11.84 
TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       12.30         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       62.47        45.11        42.25        11.84        11.47         9.76 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 
       36.26         2.47        15.68         0.26        44.91        34.78 
TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
       36.62        57.57        24.26        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 
       30.18        22.45         6.71        42.51        44.09        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       29.06        21.53        22.85        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2532 TCGA-36-2534 
       25.74        24.23        24.69        35.05        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-42-2582 TCGA-42-2588 
       18.31        20.52        14.17        16.14        14.30         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 TCGA-57-1992 
        7.56         7.46         7.63        24.03        21.14        28.96 
TCGA-57-1993 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
       25.05        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       31.40        18.54        27.88        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        2.43        33.67         1.41        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       17.98         3.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
       45.96         4.80        51.72        71.74        61.64        58.39 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       76.83        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2613 
       15.88        31.07 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.53              0.26 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           180.16            151.99 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           20.775            29.080 
[1] "0.5 - 180.2 (20.8)" "0.3 - 152.0 (29.1)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
[1] "hr=" "1.2"
D4V2, continuous
D4V3, multiclass
                    clus
vv                   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          114               434
  PERITONEUM (OVARY)               0                 2
D4V4, continuous
D4V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      1  113
  2Q GAIN WILD-TYPE    2  436
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                1                 2
  YES             113               436
D4V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     91   23
  2Q GAIN WILD-TYPE  357   81
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO               91               357
  YES              23                81

Clustering(5) Variable = 3p gain mutation analysis
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    52  58
  3P GAIN WILD-TYPE 209 227
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
              110               436 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               58               227 
$`3P GAIN MUTATED`
TCGA-04-1337 TCGA-04-1338 TCGA-04-1349 TCGA-04-1362 TCGA-04-1516 TCGA-04-1517 
        2.01        46.62        21.57        44.32        41.59        19.99 
TCGA-04-1646 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-1661 TCGA-09-1665 
       27.88        45.34        29.16         9.47        38.43        41.59 
TCGA-09-1668 TCGA-09-1672 TCGA-09-1674 TCGA-09-2043 TCGA-10-0935 TCGA-10-0936 
       55.36         5.85         8.55         6.15        35.41        35.80 
TCGA-13-0724 TCGA-13-0751 TCGA-13-0760 TCGA-13-0761 TCGA-13-0800 TCGA-13-0899 
        2.73        55.17        11.54        34.06         8.12        56.15 
TCGA-13-0911 TCGA-13-1403 TCGA-13-1410 TCGA-13-1484 TCGA-13-1504 TCGA-13-1507 
       27.68        10.88         4.70        98.04        16.57         4.77 
TCGA-13-2059 TCGA-20-1683 TCGA-20-1686 TCGA-23-1109 TCGA-23-1110 TCGA-23-1117 
       12.23        25.38         2.93        51.35        54.51        33.30 
TCGA-23-2078 TCGA-23-2079 TCGA-24-0982 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 
       87.48        91.66        22.32         6.02         4.80        17.36 
TCGA-24-1434 TCGA-24-1436 TCGA-24-1467 TCGA-24-1470 TCGA-24-1474 TCGA-24-1553 
       18.67         8.55       105.99         3.42        22.19        58.09 
TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 TCGA-24-1604 TCGA-24-1616 TCGA-24-1847 
       88.50        39.88        19.53        88.34        38.24        11.28 
TCGA-24-1920 TCGA-24-2019 TCGA-24-2020 TCGA-24-2033 TCGA-24-2038 TCGA-24-2260 
        9.80         4.87       151.99        18.48        44.48        36.16 
TCGA-24-2295 TCGA-25-1319 TCGA-25-1321 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       33.11        65.00        33.96         2.96        18.58        18.02 
TCGA-25-1626 TCGA-25-1634 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 
       15.78        35.54        24.99        18.05        85.05         1.02 
TCGA-25-2398 TCGA-25-2400 TCGA-29-1701 TCGA-29-1703 TCGA-29-1770 TCGA-29-1775 
       45.01        42.02        16.90        59.67        24.36        12.36 
TCGA-29-1778 TCGA-29-2428 TCGA-29-2431 TCGA-29-2434 TCGA-30-1718 TCGA-30-1859 
       14.93        45.11        42.25        11.47        51.91        48.07 
TCGA-30-1861 TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 TCGA-31-1950 TCGA-36-1569 
       34.78         1.18        24.26        48.79        18.77        29.06 
TCGA-36-1578 TCGA-36-2529 TCGA-36-2547 TCGA-57-1583 TCGA-57-1586 TCGA-57-1994 
       27.85        35.05        20.52        11.38        22.32        25.02 
TCGA-59-2351 TCGA-59-2352 TCGA-61-1722 TCGA-61-1733 TCGA-61-1899 TCGA-61-1900 
      116.12         9.40         8.05        31.76         8.42         5.79 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-2008 TCGA-61-2097 
       13.02         9.07        34.13        31.30        30.61        60.62 
TCGA-61-2104 TCGA-61-2612 
       76.83         6.35 

$`3P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1342 TCGA-04-1343 
       40.24        41.00         1.81        49.15        18.51        11.87 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       65.49        63.06        48.76        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       32.52        33.67        76.54        71.47        82.36        56.55 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       38.37       119.08        29.06        84.20        55.40        48.89 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0366 
       28.64        64.64        36.23        31.86        47.70        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 
       17.95        35.54         9.96        89.33        74.89        57.57 
TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 TCGA-09-2044 
       61.87        30.48        17.98         3.02        97.55         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0937 
       18.48        33.24        32.28        11.70         3.88        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 
       19.86         6.21        24.59        44.55        39.58        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       31.07        15.19        17.79         2.47        11.18        11.38 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 
       28.70        30.35        19.56         8.71         7.79         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 
       67.99        69.01        43.36        57.47        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.41         6.08         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        6.84         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       29.39        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 
       38.37        13.97        32.84         4.21         4.41         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 
        2.56         3.88         3.09        14.24         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
       27.48        19.07        16.67         2.66        47.54        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 
       29.10        18.87         2.24         3.22        31.20        68.68 
TCGA-23-1116 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 
        4.57        86.01       129.96         4.27         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2081 
       33.47        58.13         0.53        24.95       115.89        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 
       11.64        21.80        41.56         7.66        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1430 TCGA-24-1431 
        0.76         6.25         5.95         5.36        28.34        19.17 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 TCGA-24-1471 
       43.53        72.92        12.46        45.14         9.11         1.18 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1556 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       51.91        41.39        70.62        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1842 
       25.87        10.26        17.23        90.15        48.33         8.32 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 
        3.48         3.72         3.81         4.37         5.75         5.49 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2023 
       22.65        30.21        16.41        11.05        81.11        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 
       58.16        34.82       109.68        14.43        53.95        28.18 
TCGA-24-2036 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       64.01        57.07         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 
       37.02         1.02        34.98        36.95         2.99        12.00 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1635 TCGA-25-1870 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 
       51.22        14.93        13.02        49.05        38.04         3.02 
TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       12.00        19.99         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1702 TCGA-29-1705 
       33.70        31.17        68.28         0.53        18.64        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 
       62.93        39.09        31.23        22.98        22.52        17.29 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       11.84        12.30         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 TCGA-29-2432 TCGA-29-2436 
       86.17        65.00        62.47         4.87        11.84         9.76 
TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 
       38.07        36.26         2.47        15.68         0.26        44.91 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1880 TCGA-30-1891 TCGA-31-1944 TCGA-31-1946 
        6.08        36.62        57.57        30.05        45.57        30.18 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.23        24.69        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
       14.17        16.14        11.47        14.30         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 
        7.46         7.63        24.03        21.14         1.74        28.96 
TCGA-57-1993 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 
       25.05       180.16        80.12        22.32        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
        5.39        44.78        11.11        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       27.88         4.34        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1901 TCGA-61-1910 
        2.43        33.67        43.69         1.41        11.41        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       42.48        48.92        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 
        4.77        51.72        71.74        61.64        58.39        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
       55.50         6.48        20.68        44.52       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 TCGA-61-2614 
       51.91        15.88        31.07         8.58 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             1.02              0.26 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           151.99            180.16 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           25.200            28.845 
[1] "1.0 - 152.0 (25.2)" "0.3 - 180.2 (28.8)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D5V2, continuous
D5V3, multiclass
                    clus
vv                   3P GAIN MUTATED 3P GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          109               439
  PERITONEUM (OVARY)               1                 1
D5V4, continuous
D5V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      0  110
  3P GAIN WILD-TYPE    3  439
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                0                 3
  YES             110               439
D5V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     84   26
  3P GAIN WILD-TYPE  364   78
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO               84               364
  YES              26                78

Clustering(6) Variable = 3q gain mutation analysis
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED   124 127
  3Q GAIN WILD-TYPE 137 158
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              251               295 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              127               158 
$`3Q GAIN MUTATED`
TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
        1.81         2.01        46.62        11.87        65.49        63.06 
TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       48.76        21.57        63.98        32.52        44.32        33.67 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1530 TCGA-04-1542 TCGA-04-1646 TCGA-04-1649 
       41.59        19.99       119.08        84.20        27.88        64.64 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-1661 TCGA-09-1665 
       45.34        29.16         9.47        57.73        38.43        41.59 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1672 TCGA-09-1674 TCGA-09-2044 TCGA-09-2051 
       55.36        30.48         5.85         8.55         6.12        63.09 
TCGA-09-2053 TCGA-10-0933 TCGA-10-0935 TCGA-10-0936 TCGA-13-0724 TCGA-13-0727 
       39.75        11.70        35.41        35.80         2.73        15.19 
TCGA-13-0751 TCGA-13-0757 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0768 
       55.17        11.18        11.54        34.06        31.04         8.42 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0800 TCGA-13-0802 TCGA-13-0804 TCGA-13-0884 
       19.56         8.71         8.12         8.19        35.28       107.18 
TCGA-13-0888 TCGA-13-0897 TCGA-13-0899 TCGA-13-0901 TCGA-13-0910 TCGA-13-0911 
       70.39        57.47        56.15        19.36        37.08        27.68 
TCGA-13-0921 TCGA-13-1403 TCGA-13-1407 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        4.64        10.88         6.05         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1484 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 
        5.33        98.04        22.39        82.88        52.44        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 
       49.22         4.24        54.31        16.57         4.41         4.77 
TCGA-13-1509 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 
        4.14        14.24        12.23         8.58         8.75         6.28 
TCGA-20-0990 TCGA-20-1682 TCGA-20-1683 TCGA-20-1686 TCGA-23-1021 TCGA-23-1028 
       25.94        27.48        25.38         2.93        47.54        49.41 
TCGA-23-1029 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1114 
        8.81        18.87         2.24        51.35        54.51        68.68 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
       33.30        86.01       129.96        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 
        0.53        87.48        91.66        49.84         2.76         4.50 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0979 TCGA-24-0982 TCGA-24-1104 TCGA-24-1418 
       19.63        11.64        41.56        22.32        63.55         7.99 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        0.76         6.25         6.02         5.36         4.80        17.36 
TCGA-24-1434 TCGA-24-1436 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 
       18.67         8.55       105.99         9.11         3.42        22.19 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.06        51.91        58.09        70.62        39.88        19.53 
TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1847 TCGA-24-1920 
       88.34        38.24         8.32         3.48        11.28         9.80 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 TCGA-24-2033 
       11.05        81.11         4.87       151.99        34.82        18.48 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       44.48        57.07        36.16         0.79         0.36        47.54 
TCGA-24-2280 TCGA-24-2288 TCGA-24-2293 TCGA-24-2295 TCGA-25-1312 TCGA-25-1317 
       70.45         0.82        16.64        33.11         1.02         1.02 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       65.00        36.95        33.96        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 TCGA-25-1634 TCGA-25-1870 
       18.02        15.78         0.36         7.86        35.54        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2391 TCGA-25-2396 TCGA-25-2398 
       24.99        18.05        85.05        49.05         3.02        45.01 
TCGA-25-2400 TCGA-25-2404 TCGA-29-1697 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 
       42.02        29.00        31.17        68.28        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1710 TCGA-29-1761 TCGA-29-1766 TCGA-29-1770 
       59.67        18.25        29.23        17.00        39.09        24.36 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 TCGA-29-2428 
       12.36        11.84        14.93         7.20         5.36        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-30-1718 TCGA-30-1857 
        4.87        42.25        11.84        11.47        51.91         0.26 
TCGA-30-1859 TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       48.07        36.62         1.18        24.26        30.05        48.79 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1956 TCGA-31-1959 TCGA-36-1569 
       30.18        18.77        22.45        44.09         2.17        29.06 
TCGA-36-1576 TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       30.05        27.85        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       29.79        20.52        14.17        16.14        11.47        14.30 
TCGA-57-1582 TCGA-57-1586 TCGA-57-1994 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       24.03        22.32        25.02        22.32       116.12         9.40 
TCGA-59-2355 TCGA-61-1722 TCGA-61-1724 TCGA-61-1728 TCGA-61-1733 TCGA-61-1736 
        2.14         8.05        20.94        27.88        31.76        48.79 
TCGA-61-1737 TCGA-61-1899 TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
       44.84         8.42         5.79        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1998 
       31.30        56.58        67.73        43.43        15.75         5.52 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 TCGA-61-2104 
       30.61        39.85        60.62        65.49         6.48        76.83 
TCGA-61-2111 TCGA-61-2610 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
      125.72        51.91         6.35        31.07         8.58 

$`3Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1342 TCGA-04-1351 TCGA-04-1356 
       40.24        41.00        49.15        18.51        65.46        49.28 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1525 TCGA-04-1536 
       76.54        71.47        82.36        56.55        38.37        29.06 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       55.40        48.89        28.64        36.23        31.86        47.70 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 
       17.95        35.54         9.96        89.33        74.89        57.57 
TCGA-09-1667 TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2045 
       61.87        17.98         3.02        97.55         6.15        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
        4.50       112.37        71.11        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0934 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
        3.88        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 TCGA-13-0730 TCGA-13-0755 TCGA-13-0758 
       39.58        12.39        31.07        17.79         2.47        11.38 
TCGA-13-0762 TCGA-13-0766 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       32.25        21.40        38.93        36.72        28.70        30.35 
TCGA-13-0799 TCGA-13-0801 TCGA-13-0803 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        7.79         8.28        43.82        35.28        13.61        68.91 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       91.40        74.27        66.64        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       43.36        57.07        47.38        48.33        47.84        44.94 
TCGA-13-0908 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       44.84        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1477 
        6.41         6.08         6.61         7.36         5.92        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1485 TCGA-13-1488 TCGA-13-1492 
       87.06        61.71        29.39        20.68        70.82        73.55 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1510 
       37.61        38.37        13.97        32.84         4.21         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2061 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 
        3.88         3.09        10.78        23.05        26.20        72.20 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
       19.07        16.67         2.66        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1030 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 
       26.83        31.73        29.10         3.22        31.20         4.57 
TCGA-23-1120 TCGA-23-1121 TCGA-23-2072 TCGA-23-2077 TCGA-23-2081 TCGA-23-2643 
        4.27         6.38        24.95       115.89        77.00         4.70 
TCGA-24-0966 TCGA-24-0975 TCGA-24-0980 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 
        7.63        21.80         7.66        54.08        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 TCGA-24-1425 TCGA-24-1430 TCGA-24-1431 
        6.38         7.82         7.86         5.95        28.34        19.17 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1471 TCGA-24-1544 
       43.53        72.92        12.46        45.14         1.18        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1552 TCGA-24-1555 
       57.37        64.27        16.21        56.58        41.39        88.50 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1614 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 
       90.15        48.33         3.72         3.81         4.37         5.75 
TCGA-24-1850 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-2023 TCGA-24-2024 
        5.49        22.65        30.21        16.41        44.84        58.16 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2271 
      109.68        14.43        53.95        28.18        64.01        31.63 
TCGA-24-2281 TCGA-24-2289 TCGA-24-2290 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 
       44.58        67.36        36.23        55.86        53.26        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1322 TCGA-25-1628 
       31.99        51.06        37.02        34.98         2.99        20.58 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-2042 TCGA-25-2392 
        0.30        56.94        60.59        51.22        13.02         1.02 
TCGA-25-2393 TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 
       38.04        12.00        19.99         2.96        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1699 TCGA-29-1707 TCGA-29-1711 TCGA-29-1762 TCGA-29-1763 
       33.70         0.53        41.95        34.62        85.68        66.77 
TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1777 
       62.93        31.23        22.98        22.52        17.29        12.30 
TCGA-29-1781 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2436 
        8.35        34.62        86.17        65.00        62.47         9.76 
TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1860 TCGA-30-1861 
       38.07        36.26         2.47        15.68        44.91        34.78 
TCGA-30-1862 TCGA-30-1880 TCGA-31-1944 TCGA-31-1953 TCGA-31-1955 TCGA-36-1568 
        6.08        57.57        45.57         6.71        42.51        28.73 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1577 TCGA-36-1580 
       21.53        22.85        22.55         8.55        25.74        24.23 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 
       18.31         9.44         7.56         7.46         7.63        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-59-2348 TCGA-59-2349 
       21.14         1.74        28.96        25.05       180.16        80.12 
TCGA-59-2354 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1725 TCGA-61-1727 
       34.39         5.39        44.78        11.11        31.40        18.54 
TCGA-61-1730 TCGA-61-1734 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
        4.34        28.47        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1901 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1919 
        1.41        11.41        37.02        42.48        48.92        38.17 
TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2012 TCGA-61-2016 
        1.97        14.50        17.98         3.98        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2101 TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 
       61.64        58.39        55.50        20.68        44.52        22.22 
TCGA-61-2611 
       15.88 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.26              0.30 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           151.99            180.16 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            24.99             29.98 
[1] "0.3 - 152.0 (25.0)" "0.3 - 180.2 (30.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
[1] "hr=" "1"  
D6V2, continuous
D6V3, multiclass
                    clus
vv                   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          253               295
  PERITONEUM (OVARY)               2                 0
D6V4, continuous
D6V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      0  256
  3Q GAIN WILD-TYPE    3  293
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO                0                 3
  YES             256               293
D6V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED    200   56
  3Q GAIN WILD-TYPE  248   48
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO              200               248
  YES              56                48

Clustering(7) Variable = 4p gain mutation analysis
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED    14  24
  4P GAIN WILD-TYPE 247 261
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               38               508 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               24               261 
$`4P GAIN MUTATED`
TCGA-04-1349 TCGA-04-1356 TCGA-04-1364 TCGA-04-1646 TCGA-09-2048 TCGA-13-0726 
       21.57        49.28        33.67        27.88         4.50        31.07 
TCGA-13-0802 TCGA-13-0887 TCGA-13-0893 TCGA-13-1405 TCGA-13-1496 TCGA-13-1499 
        8.19        66.64        43.36         7.36         4.24        38.37 
TCGA-13-2060 TCGA-23-1026 TCGA-23-1114 TCGA-23-1124 TCGA-23-2079 TCGA-24-1557 
        8.58        26.83        68.68        58.13        91.66        39.88 
TCGA-24-1558 TCGA-24-1847 TCGA-24-1928 TCGA-24-2033 TCGA-25-1321 TCGA-25-1877 
       19.53        11.28        11.05        18.48        33.96        18.05 
TCGA-25-2392 TCGA-25-2396 TCGA-29-1691 TCGA-29-1711 TCGA-29-1763 TCGA-29-1784 
        1.02         3.02        47.18        34.62        66.77         5.36 
TCGA-30-1718 TCGA-30-1855 TCGA-36-1569 TCGA-36-1578 TCGA-36-2529 TCGA-61-1740 
       51.91         2.47        29.06        27.85        35.05         2.43 
TCGA-61-1915 TCGA-61-1918 
       67.73        15.75 

$`4P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 
       18.51        11.87        65.49        63.06        48.76        63.98 
TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       65.46        32.52        44.32        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       84.20        55.40        48.89        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       31.86        47.70        45.34        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
       35.15       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 
       26.93        12.46        54.31        25.91        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       33.24        32.28        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       15.12        19.86         6.21        24.59        44.55        39.58 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
        2.73        12.39        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       11.18        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 
       19.56         8.71         7.79         8.12         8.28        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       35.28        35.28        13.61        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 
       74.27        70.39        61.81        67.99        69.01        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       44.94        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       21.14        14.89        13.81         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
       10.88         6.61         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 
       73.55        38.17        49.22        54.31        37.61        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 
        2.56         3.88         3.09        14.24        12.23        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1027 TCGA-23-1028 
       47.54        42.51        40.54        15.39        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
        3.22        31.20         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1809 TCGA-23-2072 
        4.27         6.38        39.09        33.47         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
      115.89        87.48        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        6.02         5.95         5.36         4.80        17.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       19.17        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1560 
       51.91        41.39        58.09        88.50        70.62        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       45.50        47.70        25.87        10.26        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       88.34        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        3.81         4.37         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       30.21        16.41        81.11         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 
       58.16        34.82       109.68        14.43        53.95        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       64.01        44.48        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       65.00        36.95         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 
       85.05        13.02        49.05        38.04        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       78.87        44.71       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
       31.17        68.28         0.53        16.90        18.64        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 
       18.25        41.95        29.23        17.00        85.68        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       12.36        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 
       42.25        11.84        11.47         9.76        38.07        36.26 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 
       44.09         2.17        28.73        21.53        22.85        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 
        8.55        30.05        25.74        24.23        24.69        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 
        2.24        20.98        18.31        20.52        14.17        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       11.47        14.30         9.44         7.56         7.46         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       24.03        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       25.05        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1741 
       31.76        28.47        48.79        44.84        35.80        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
        9.07        34.13        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       56.58        43.43        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       17.98         3.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       76.83        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       15.88         6.35        31.07         8.58 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             1.02              0.26 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            91.66            180.16 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           27.865            28.555 
[1] "1.0 - 91.7 (27.9)"  "0.3 - 180.2 (28.6)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D7V2, continuous
D7V3, multiclass
                    clus
vv                   4P GAIN MUTATED 4P GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           37               511
  PERITONEUM (OVARY)               1                 1
D7V4, continuous
D7V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      0   38
  4P GAIN WILD-TYPE    3  511
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                0                 3
  YES              38               511
D7V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED     30    8
  4P GAIN WILD-TYPE  418   96
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO               30               418
  YES               8                96

Clustering(8) Variable = 4q gain mutation analysis
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     7   9
  4Q GAIN WILD-TYPE 254 276
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               16               530 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                9               276 
$`4Q GAIN MUTATED`
TCGA-04-1338 TCGA-04-1349 TCGA-04-1356 TCGA-10-0936 TCGA-13-2060 TCGA-23-2078 
       46.62        21.57        49.28        35.80         8.58        87.48 
TCGA-24-1847 TCGA-25-2396 TCGA-25-2409 TCGA-29-1691 TCGA-29-1701 TCGA-29-1702 
       11.28         3.02        26.96        47.18        16.90        18.64 
TCGA-29-1763 TCGA-30-1718 TCGA-36-1578 TCGA-61-1915 
       66.77        51.91        27.85        67.73 

$`4Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 
       40.24        41.00         1.81        49.15         2.01        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 
       11.87        65.49        63.06        48.76        63.98        65.46 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       32.52        44.32        33.67        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.41        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 
       61.81        67.99        69.01        43.36        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       57.07        19.36        47.38        48.33        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       14.89        13.81         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.61         7.36         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.77         4.14         2.56         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
       12.23        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
        2.93         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 
        2.24        51.35        54.51         3.22        31.20        68.68 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        4.57        33.30        86.01       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 
       39.09        33.47        58.13         0.53        24.95       115.89 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       18.67        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.39        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.72         3.81         4.37         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       36.16         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       44.58         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       35.54        51.22        14.93        24.99        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 
       13.02        49.05         1.02        38.04        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-29-1688 
       19.99        42.02         2.96        29.00        30.97        78.87 
TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       44.71       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       68.28         0.53        59.67        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       34.62        17.00        85.68        62.93        39.09        31.23 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 
       22.98        24.36        22.52        17.29        12.36        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       12.30        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
       86.17        65.00        62.47        45.11         4.87        42.25 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 
       11.84        11.47         9.76        38.07        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 
       22.55         8.55        30.05        25.74        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
       14.17        16.14        11.47        14.30         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.46         7.63        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 
       37.02        42.48        48.92        56.58        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       30.61        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       60.62        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       44.52       125.72        22.22        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             3.02              0.26 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            87.48            180.16 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           31.825            28.405 
[1] "3.0 - 87.5 (31.8)"  "0.3 - 180.2 (28.4)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D8V2, continuous
D8V3, multiclass
                    clus
vv                   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           16               532
  PERITONEUM (OVARY)               0                 2
D8V4, continuous
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2                74 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1351        TCGA-04-1367 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-10-0925        TCGA-10-0926        TCGA-13-0714        TCGA-13-0720 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0724        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0762        TCGA-13-0764        TCGA-13-0768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0791        TCGA-13-0792        TCGA-13-0793        TCGA-13-0794 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0795        TCGA-13-0797        TCGA-13-0799        TCGA-13-0801 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0802        TCGA-13-0885        TCGA-13-0887        TCGA-13-0888 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0889        TCGA-13-0891        TCGA-13-0897        TCGA-13-0900 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0901        TCGA-13-0903        TCGA-13-0904        TCGA-13-0905 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0906        TCGA-13-0910        TCGA-13-0911        TCGA-13-0912 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-0913        TCGA-13-0919        TCGA-13-1404        TCGA-13-1405 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1409        TCGA-13-1410        TCGA-13-1412        TCGA-13-1482 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1483        TCGA-13-1484        TCGA-13-1485        TCGA-13-1488 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1489        TCGA-13-1491        TCGA-13-1492        TCGA-13-1495 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1506        TCGA-13-1507 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-1509        TCGA-13-1511        TCGA-13-1512        TCGA-13-2057 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-13-2059        TCGA-13-2061        TCGA-13-2071        TCGA-24-1614 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-24-1930        TCGA-61-2101 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
D8V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      0   16
  4Q GAIN WILD-TYPE    3  533
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                0                 3
  YES              16               533
D8V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED     12    4
  4Q GAIN WILD-TYPE  436  100
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO               12               436
  YES               4               100

Clustering(9) Variable = 5p gain mutation analysis
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED    84  82
  5P GAIN WILD-TYPE 177 203
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              166               380 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               82               203 
$`5P GAIN MUTATED`
TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 
        2.01        18.51        65.49        44.32        76.54        71.47 
TCGA-04-1530 TCGA-04-1646 TCGA-04-1654 TCGA-04-1655 TCGA-09-0367 TCGA-09-1659 
      119.08        27.88        47.70        45.34        17.95         9.96 
TCGA-09-1662 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-10-0927 
       89.33         8.55        97.55         6.15         6.12        81.47 
TCGA-10-0930 TCGA-10-0933 TCGA-10-0936 TCGA-10-0937 TCGA-13-0723 TCGA-13-0725 
       33.24        11.70        35.80        15.12        39.58        12.39 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 TCGA-13-0760 TCGA-13-0766 
       15.19        17.79        55.17        11.18        11.54        21.40 
TCGA-13-0792 TCGA-13-0801 TCGA-13-0804 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 
       36.72         8.28        35.28        68.91       107.18        74.27 
TCGA-13-0889 TCGA-13-0899 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0911 
       61.81        56.15        48.33        47.84        44.94        27.68 
TCGA-13-0920 TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1411 
       13.81        10.88         6.61         6.05         5.92         4.21 
TCGA-13-1481 TCGA-13-1484 TCGA-13-1489 TCGA-13-1492 TCGA-13-1498 TCGA-13-1501 
       87.06        98.04        82.88        73.55        37.61        32.84 
TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 TCGA-13-1512 TCGA-20-1682 TCGA-20-1685 
       16.57         4.41         4.77         3.09        27.48        16.67 
TCGA-20-1686 TCGA-23-1021 TCGA-23-1024 TCGA-23-1026 TCGA-23-1111 TCGA-23-1116 
        2.93        47.54        15.39        26.83         3.22         4.57 
TCGA-23-1119 TCGA-23-1121 TCGA-23-1809 TCGA-23-2079 TCGA-23-2084 TCGA-23-2643 
      129.96         6.38         0.53        91.66        49.84         4.70 
TCGA-23-2645 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1417 TCGA-24-1419 
        4.50        21.80        41.56        22.32         7.82         7.86 
TCGA-24-1425 TCGA-24-1427 TCGA-24-1428 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
        5.95         4.80        17.36        43.53         8.55        72.92 
TCGA-24-1469 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1553 TCGA-24-1555 
        9.11         1.18        22.19        26.96        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1604 TCGA-24-1616 TCGA-24-1845 TCGA-24-1847 
       70.62        39.88        88.34        38.24         3.81        11.28 
TCGA-24-1850 TCGA-24-2020 TCGA-24-2026 TCGA-24-2035 TCGA-24-2260 TCGA-24-2267 
        5.49       151.99        34.82        28.18        36.16        47.54 
TCGA-24-2280 TCGA-24-2288 TCGA-24-2289 TCGA-24-2293 TCGA-24-2295 TCGA-25-1313 
       70.45         0.82        67.36        16.64        33.11        26.93 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1329 TCGA-25-1627 TCGA-25-1634 
       34.98        65.00        33.96         2.96         0.36        35.54 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-29-1688 
       18.05        85.05         1.02         3.02        12.00        78.87 
TCGA-29-1691 TCGA-29-1695 TCGA-29-1705 TCGA-29-1707 TCGA-29-1761 TCGA-29-1763 
       47.18         0.79        18.25        41.95        17.00        66.77 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 TCGA-29-1774 TCGA-29-1784 TCGA-29-2425 
       39.09        31.23        24.36        17.29         5.36        65.00 
TCGA-29-2432 TCGA-30-1718 TCGA-30-1892 TCGA-31-1950 TCGA-36-1569 TCGA-36-1578 
       11.84        51.91        48.79        18.77        29.06        27.85 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-42-2582 
       24.69        35.05        20.52        14.17        16.14        14.30 
TCGA-42-2588 TCGA-57-1993 TCGA-57-1994 TCGA-59-2363 TCGA-61-1725 TCGA-61-1728 
        9.44        25.05        25.02         5.39        31.40        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1901 TCGA-61-1903 TCGA-61-1917 TCGA-61-1918 
        4.34        31.76        11.41        13.02        43.43        15.75 
TCGA-61-1919 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2087 TCGA-61-2098 
       38.17         3.98        30.61        30.64         4.80        65.49 
TCGA-61-2101 TCGA-61-2610 TCGA-61-2612 TCGA-61-2614 
       55.50        51.91         6.35         8.58 

$`5P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00         1.81        49.15        46.62        11.87 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       63.06        48.76        21.57        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1364 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       32.52        33.67        82.36        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
       38.37        29.06        84.20        55.40        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       64.64        36.23        31.86        29.16         9.47        57.73 
TCGA-09-0369 TCGA-09-1661 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       35.54        38.43        74.89        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-2045 
       55.36        30.48        17.98         5.85         3.02        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        4.50       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 TCGA-10-0931 
       26.93        12.46        54.31        25.91        18.48        32.28 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
        3.88        35.41        19.86         6.21        24.59        44.55 
TCGA-13-0724 TCGA-13-0726 TCGA-13-0755 TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 
        2.73        31.07         2.47        11.38        34.06        32.25 
TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
       31.04         8.42        38.93        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 
        8.71         7.79         8.12         8.19        43.82        35.28 
TCGA-13-0807 TCGA-13-0885 TCGA-13-0887 TCGA-13-0888 TCGA-13-0890 TCGA-13-0891 
       13.61        91.40        66.64        70.39        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0908 
       43.36        57.47        57.07        19.36        47.38        44.84 
TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 
       37.08        34.06        29.98        21.14        14.89         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1405 TCGA-13-1409 TCGA-13-1410 TCGA-13-1412 
        6.41         6.08         7.36         6.84         4.70         5.33 
TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       54.61        61.71        29.39        20.68        22.39        70.82 
TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1499 
       52.44        38.17        49.22         4.24        54.31        38.37 
TCGA-13-1500 TCGA-13-1505 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 
       13.97         4.21         4.14         2.56         3.88        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       12.23         8.58        10.78         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 TCGA-20-1687 
       25.94        26.20        72.20        25.38        19.07         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       42.51        40.54        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 
       18.87         2.24        51.35        54.51        31.20        68.68 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
       33.30        86.01         4.27        39.09        33.47        58.13 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2641 TCGA-24-0966 
       24.95       115.89        87.48        77.00         2.76         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       19.63        11.64         7.66        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        6.31         6.38         7.99         0.76         6.25         6.02 
TCGA-24-1426 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1464 TCGA-24-1466 
        5.36        28.34        19.17        18.67        12.46        45.14 
TCGA-24-1467 TCGA-24-1470 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
      105.99         3.42        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       41.06        51.91        41.39        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 
       47.70        25.87        10.26        17.23        90.15        48.33 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 
        8.32         3.48         3.72         4.37         5.75         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       44.84        58.16       109.68        14.43        53.95        18.48 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 
       64.01        44.48        57.07         0.79         0.36        31.63 
TCGA-24-2281 TCGA-24-2290 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1314 
       44.58        36.23        55.86        53.26         1.02        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 
       51.06        37.02         1.02        36.95         2.99        12.00 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.58        18.02        15.78        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 
       56.94        60.59        51.22        14.93        24.99        13.02 
TCGA-25-2391 TCGA-25-2393 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
       49.05        38.04        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 
       29.00        30.97        26.96        44.71       101.75        38.53 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1710 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1769 
       59.67        29.23        34.62        85.68        62.93        22.98 
TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       22.52        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
        7.20        34.62        86.17        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 
       42.25        11.47         9.76        38.07        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-31-1944 
       36.62         1.18        57.57        24.26        30.05        45.57 
TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       30.18        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       28.73        21.53        22.85        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       25.74        24.23        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2552 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
       11.47         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-59-2348 TCGA-59-2349 
       21.14         1.74        22.32        28.96       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2372 
       22.32       116.12         9.40        34.39         2.14        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1727 TCGA-61-1734 TCGA-61-1736 
       11.11         8.05        20.94        18.54        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        8.42         5.79         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1995 TCGA-61-1998 
       42.48        48.92        56.58        67.73         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       14.50        17.98        39.85         1.18        45.96        45.40 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.77        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2611 TCGA-61-2613 
       15.88        31.07 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.36              0.26 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           151.99            180.16 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            26.88             29.13 
[1] "0.4 - 152.0 (26.9)" "0.3 - 180.2 (29.1)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
[1] "hr=" "1.1"
D9V2, continuous
D9V3, multiclass
                    clus
vv                   5P GAIN MUTATED 5P GAIN WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          166               382
  PERITONEUM (OVARY)               2                 0
D9V4, continuous
D9V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      1  168
  5P GAIN WILD-TYPE    2  381
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO                1                 2
  YES             168               381
D9V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED    137   32
  5P GAIN WILD-TYPE  311   72
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO              137               311
  YES              32                72

Clustering(10) Variable = 5q gain mutation analysis
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    20  18
  5Q GAIN WILD-TYPE 241 267
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               38               508 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               18               267 
$`5Q GAIN MUTATED`
TCGA-04-1337 TCGA-04-1343 TCGA-04-1530 TCGA-04-1655 TCGA-10-0930 TCGA-10-0936 
        2.01        11.87       119.08        45.34        33.24        35.80 
TCGA-13-0792 TCGA-13-0807 TCGA-13-0911 TCGA-13-1482 TCGA-13-1489 TCGA-13-1498 
       36.72        13.61        27.68        61.71        82.88        37.61 
TCGA-13-1504 TCGA-20-1687 TCGA-23-1111 TCGA-23-1117 TCGA-23-2079 TCGA-23-2645 
       16.57         2.66         3.22        33.30        91.66         4.50 
TCGA-24-1417 TCGA-24-1425 TCGA-24-1427 TCGA-24-1428 TCGA-24-1471 TCGA-24-1556 
        7.82         5.95         4.80        17.36         1.18        70.62 
TCGA-24-1845 TCGA-24-2288 TCGA-25-1314 TCGA-25-1329 TCGA-29-1763 TCGA-29-2414 
        3.81         0.82        31.99         2.96        66.77        86.17 
TCGA-29-2432 TCGA-30-1892 TCGA-31-1946 TCGA-36-1569 TCGA-36-2529 TCGA-61-1725 
       11.84        48.79        30.18        29.06        35.05        31.40 
TCGA-61-2612 TCGA-61-2614 
        6.35         8.58 

$`5Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81        49.15        46.62        18.51 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       65.49        63.06        48.76        21.57        63.98        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       49.28        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 
       82.36        56.55        41.59        19.99        38.37        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       36.23        31.86        47.70        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 
       18.48        32.28        11.70         3.88        35.41        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       11.18        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
       21.40         8.42        38.93        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        35.28        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       57.47        56.15        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 
       47.84        44.94        44.84        37.08        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       21.14        14.89        13.81         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       10.88         6.61         7.36         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1483 
        4.70         4.21         5.33        54.61        87.06        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       98.04        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1499 TCGA-13-1500 
       38.17        49.22         4.24        54.31        38.37        13.97 
TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       32.84         4.21         4.41         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        3.88         3.09        14.24        12.23         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 
       27.48        25.38        19.07        16.67         2.93        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       31.20        68.68         4.57        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        6.38        39.09        33.47        58.13         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
      115.89        87.48        77.00        49.84         2.76         4.70 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 
        7.99         7.86         0.76         6.25         6.02         5.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 
       12.46        45.14       105.99         9.11         3.42        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 
       51.91        41.39        58.09        88.50        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.72         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 
       36.16         0.79         0.36        47.54        31.63        70.45 
TCGA-24-2281 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
       44.58        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
       53.26         1.02        26.93        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       68.28         0.53        16.90        18.64        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 
       41.95        29.23        34.62        17.00        85.68        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       12.36        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
        5.36        34.62        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       42.25        11.47         9.76        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-31-1944 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       45.57        18.77        22.45         6.71        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
        2.17        28.73        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 
       30.05        25.74        27.85        24.23        24.69        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 
        2.24        20.98        18.31        20.52        14.17        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       11.47        14.30         9.44         7.56         7.46         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       24.03        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       25.05        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
        8.05        20.94        18.54        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
        9.07        34.13        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       56.58        67.73        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 
       22.22        51.91        15.88        31.07 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.82              0.26 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           119.08            180.16 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           28.370            28.405 
[1] "0.8 - 119.1 (28.4)" "0.3 - 180.2 (28.4)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
[1] "hr=" "1.1"
D10V2, continuous
D10V3, multiclass
                    clus
vv                   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           38               510
  PERITONEUM (OVARY)               1                 1
D10V4, continuous
D10V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      0   39
  5Q GAIN WILD-TYPE    3  510
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                0                 3
  YES              39               510
D10V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     30    9
  5Q GAIN WILD-TYPE  418   95
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO               30               418
  YES               9                95

Clustering(11) Variable = 6p gain mutation analysis
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    85  74
  6P GAIN WILD-TYPE 176 211
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              159               387 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               74               211 
$`6P GAIN MUTATED`
TCGA-04-1335 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1349 TCGA-04-1362 
        1.81        18.51        65.49        63.06        21.57        44.32 
TCGA-04-1364 TCGA-04-1525 TCGA-09-0364 TCGA-09-0366 TCGA-09-1662 TCGA-09-1665 
       33.67        38.37        29.16        57.73        89.33        41.59 
TCGA-09-1667 TCGA-09-1669 TCGA-09-1674 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
       61.87        30.48         8.55         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2054 TCGA-10-0925 TCGA-10-0933 TCGA-13-0717 TCGA-13-0724 
       63.09        20.91        54.31        11.70        24.59         2.73 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0791 TCGA-13-0792 TCGA-13-0795 
       11.54        34.06        31.04        38.93        36.72        19.56 
TCGA-13-0800 TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 TCGA-13-0888 TCGA-13-0901 
        8.12        68.91        91.40        74.27        70.39        19.36 
TCGA-13-0903 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1407 TCGA-13-1412 
       47.38        13.81         6.41         6.08         6.05         5.33 
TCGA-13-1477 TCGA-13-1484 TCGA-13-1494 TCGA-13-1496 TCGA-13-1499 TCGA-13-1510 
       54.61        98.04        38.17         4.24        38.37         2.56 
TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-20-0990 TCGA-20-1685 
       14.24         8.58        10.78         8.75        25.94        16.67 
TCGA-20-1686 TCGA-23-1023 TCGA-23-1029 TCGA-23-1030 TCGA-23-1109 TCGA-23-1110 
        2.93        40.54         8.81        29.10        51.35        54.51 
TCGA-23-1117 TCGA-23-1120 TCGA-23-1121 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 
       33.30         4.27         6.38        58.13         0.53       115.89 
TCGA-23-2079 TCGA-24-0982 TCGA-24-1417 TCGA-24-1423 TCGA-24-1424 TCGA-24-1469 
       91.66        22.32         7.82         6.25         6.02         9.11 
TCGA-24-1474 TCGA-24-1555 TCGA-24-1558 TCGA-24-1563 TCGA-24-1564 TCGA-24-1604 
       22.19        88.50        19.53        47.70        25.87        88.34 
TCGA-24-1843 TCGA-24-1845 TCGA-24-1850 TCGA-24-2020 TCGA-24-2026 TCGA-24-2033 
        3.48         3.81         5.49       151.99        34.82        18.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2281 TCGA-24-2289 TCGA-24-2293 TCGA-25-1312 
       57.07        36.16        44.58        67.36        16.64         1.02 
TCGA-25-1314 TCGA-25-1317 TCGA-25-1319 TCGA-25-1323 TCGA-25-1627 TCGA-25-1634 
       31.99         1.02        65.00        12.00         0.36        35.54 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2397 
       14.93        24.99        18.05        85.05         1.02        12.00 
TCGA-25-2400 TCGA-25-2404 TCGA-29-1695 TCGA-29-1698 TCGA-29-1702 TCGA-29-1710 
       42.02        29.00         0.79        68.28        18.64        29.23 
TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 TCGA-29-1774 TCGA-29-1778 TCGA-29-2414 
       17.00        66.77        62.93        17.29        14.93        86.17 
TCGA-29-2425 TCGA-29-2429 TCGA-29-2432 TCGA-30-1718 TCGA-30-1862 TCGA-30-1891 
       65.00         4.87        11.84        51.91         6.08        30.05 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1570 TCGA-36-1576 TCGA-36-1581 
        6.71        42.51        44.09        21.53        30.05        24.69 
TCGA-36-2529 TCGA-36-2532 TCGA-36-2547 TCGA-36-2551 TCGA-36-2552 TCGA-42-2588 
       35.05        29.49        20.52        16.14        11.47         9.44 
TCGA-57-1582 TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 TCGA-59-2348 TCGA-61-1722 
       24.03         1.74        22.32        25.05       180.16         8.05 
TCGA-61-1730 TCGA-61-1737 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1907 
        4.34        44.84        33.67        43.69         1.41        31.30 
TCGA-61-1910 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 TCGA-61-1998 TCGA-61-2003 
       37.02        67.73        15.75        38.17         5.52         3.98 
TCGA-61-2009 TCGA-61-2088 TCGA-61-2098 TCGA-61-2104 TCGA-61-2113 TCGA-61-2610 
       39.85         4.77        65.49        76.83        22.22        51.91 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

$`6P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00        49.15         2.01        46.62        11.87 
TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1365 
       48.76        63.98        65.46        49.28        32.52        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1530 
       71.47        82.36        56.55        41.59        19.99       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 
       64.64        36.23        31.86        47.70        45.34         9.47 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1664 TCGA-09-1666 
       17.95        35.54         9.96        38.43        74.89        57.57 
TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 
       55.36        17.98         5.85         3.02        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0926 
        6.12        35.15        39.75        26.93        12.46        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 
       81.47        18.48        33.24        32.28         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 
       35.80        15.12        19.86         6.21        44.55        39.58 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 TCGA-13-0793 
       11.18        11.38        32.25        21.40         8.42        28.70 
TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
       30.35         8.71         7.79         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 TCGA-13-0887 TCGA-13-0889 
       35.28        35.28        13.61       107.18        66.64        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-1403 
       34.06        29.98        21.14        14.89         4.64        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        6.61         7.36         5.92         6.84         4.70         4.21 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       87.06        61.71        29.39        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 
       82.88        52.44        73.55        49.22        54.31        37.61 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2071 TCGA-20-0987 
        4.14         3.88         3.09        12.23         6.28        23.05 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1687 
       26.20        72.20        27.48        25.38        19.07         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       47.54        42.51        15.39        26.83        31.73        49.41 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
       18.87         2.24         3.22        31.20        68.68         4.57 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2078 
       86.01       129.96        39.09        33.47        24.95        87.48 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 
       19.63        11.64        21.80        41.56         7.66        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 TCGA-24-1419 
       63.55        47.41         6.31         6.38         7.99         7.86 
TCGA-24-1422 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        0.76         5.95         5.36         4.80        17.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       19.17        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 
       45.14       105.99         3.42         1.18        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1565 
       58.09        70.62        39.88        44.09        45.50        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 
       17.23        90.15        48.33        38.24         8.32         3.72 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
        4.37        11.28         5.75         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 
       16.41        11.05        81.11         4.87        44.84        58.16 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
      109.68        14.43        53.95        28.18        64.01        44.48 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2288 
        0.79         0.36        47.54        31.63        70.45         0.82 
TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1315 
       36.23        33.11        55.86        53.26        26.93        51.06 
TCGA-25-1316 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1329 
       37.02        34.98        36.95        33.96         2.99         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.58        18.02        15.78        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 
       56.94        60.59        51.22        13.02        49.05        38.04 
TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 
        3.02        45.01        19.99         2.96        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 
       78.87        44.71        47.18       101.75        38.53        33.70 
TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       31.17         0.53        16.90        59.67        18.25        41.95 
TCGA-29-1711 TCGA-29-1762 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       34.62        85.68        39.09        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 
       22.52        12.36        11.84        12.30         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2427 TCGA-29-2428 TCGA-29-2431 TCGA-29-2434 
        5.36        34.62        62.47        45.11        42.25        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
        9.76        38.07        36.26         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       48.07        44.91        34.78        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       24.26        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
        2.17        28.73        29.06        22.85        22.55         8.55 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2530 TCGA-36-2534 TCGA-36-2537 
       25.74        27.85        24.23        33.01        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2548 TCGA-42-2582 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 
       14.17        14.30         7.56         7.46         7.63        11.38 
TCGA-57-1584 TCGA-57-1992 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       21.14        28.96        25.02        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 
       20.94        31.40        18.54        27.88        31.76        28.47 
TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       48.79        35.80         2.43         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       13.02         9.07        34.13        42.48        48.92        56.58 
TCGA-61-1917 TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2012 
       43.43         1.97        14.50        17.98        30.61        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 
        1.18        45.96        45.40         4.80        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2101 TCGA-61-2102 TCGA-61-2109 
       61.64        58.39        60.62        55.50         6.48        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2611 
       44.52       125.72        15.88 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.36              0.26 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           180.16            129.96 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            25.05             28.70 
[1] "0.4 - 180.2 (25.1)" "0.3 - 130.0 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" 
[1] "hr=" "1.2"
D11V2, continuous
D11V3, multiclass
                    clus
vv                   6P GAIN MUTATED 6P GAIN WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          160               388
  PERITONEUM (OVARY)               1                 1
D11V4, continuous
D11V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      0  162
  6P GAIN WILD-TYPE    3  387
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                0                 3
  YES             162               387
D11V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED    127   35
  6P GAIN WILD-TYPE  321   69
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO              127               321
  YES              35                69

Clustering(12) Variable = 6q gain mutation analysis
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    32  31
  6Q GAIN WILD-TYPE 229 254
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               63               483 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               31               254 
$`6Q GAIN MUTATED`
TCGA-04-1342 TCGA-04-1346 TCGA-09-0366 TCGA-09-1665 TCGA-09-1667 TCGA-09-1674 
       18.51        65.49        57.73        41.59        61.87         8.55 
TCGA-09-2051 TCGA-10-0933 TCGA-13-0723 TCGA-13-0724 TCGA-13-0760 TCGA-13-0791 
       63.09        11.70        39.58         2.73        11.54        38.93 
TCGA-13-0792 TCGA-13-0795 TCGA-13-0885 TCGA-13-0920 TCGA-13-0924 TCGA-13-1496 
       36.72        19.56        91.40        13.81         6.08         4.24 
TCGA-13-1499 TCGA-13-2057 TCGA-13-2061 TCGA-23-1110 TCGA-23-1111 TCGA-23-1124 
       38.37        14.24        10.78        54.51         3.22        58.13 
TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-24-1424 TCGA-24-1469 TCGA-24-1474 
        0.53       115.89        91.66         6.02         9.11        22.19 
TCGA-24-1558 TCGA-24-1563 TCGA-24-1604 TCGA-24-1850 TCGA-24-1920 TCGA-24-2281 
       19.53        47.70        88.34         5.49         9.80        44.58 
TCGA-24-2289 TCGA-24-2293 TCGA-25-1319 TCGA-25-1871 TCGA-25-1877 TCGA-25-2392 
       67.36        16.64        65.00        24.99        18.05         1.02 
TCGA-25-2404 TCGA-29-1695 TCGA-29-1698 TCGA-29-1702 TCGA-29-1710 TCGA-29-1761 
       29.00         0.79        68.28        18.64        29.23        17.00 
TCGA-29-1763 TCGA-29-1774 TCGA-29-1778 TCGA-29-2425 TCGA-29-2432 TCGA-30-1862 
       66.77        17.29        14.93        65.00        11.84         6.08 
TCGA-36-2551 TCGA-57-1582 TCGA-57-1993 TCGA-61-1741 TCGA-61-1743 TCGA-61-1915 
       16.14        24.03        25.05        33.67        43.69        67.73 
TCGA-61-1919 TCGA-61-2088 TCGA-61-2113 
       38.17         4.77        22.22 

$`6Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       11.87        63.06        48.76        21.57        63.98        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       49.28        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
        9.47        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1666 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 
       74.89        57.57        55.36        30.48        17.98         5.85 
TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        3.02        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
      112.37        71.11        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       24.59        44.55        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 
       55.17         2.47        11.18        11.38        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 
       31.04        21.40         8.42        28.70        30.35         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 
       35.28        13.61        68.91       107.18        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       44.94        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-1403 TCGA-13-1404 
       21.14        14.89         4.64         6.41        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        7.36         6.05         5.92         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       20.68        22.39        70.82        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1501 
       38.17        49.22        54.31        37.61        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       16.57         4.21         4.41         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 
        3.88         3.09        12.23         8.58         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
       19.07        16.67         2.93         2.66        47.54        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1113 TCGA-23-1114 
       29.10        18.87         2.24        51.35        31.20        68.68 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        4.57        33.30        86.01       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 
       39.09        33.47        24.95        87.48        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        0.76         6.25         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 
       12.46        45.14       105.99         3.42         1.18        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 
       41.39        58.09        88.50        70.62        39.88        44.09 
TCGA-24-1562 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 
       45.50        25.87        10.26        17.23        90.15        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       38.24         8.32         3.48         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 
       11.28         5.75        22.65        30.21        16.41        11.05 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       81.11         4.87       151.99        44.84        58.16        34.82 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
      109.68        14.43        53.95        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       44.48        57.07        36.16         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2288 TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 
       31.63        70.45         0.82        36.23        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       53.26         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
        1.02        34.98        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
        7.86         0.30        56.94        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 
       14.93        85.05        13.02        49.05        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 
       12.00        45.01        19.99        42.02         2.96        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       26.96        78.87        44.71        47.18       101.75        38.53 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 
       33.70        31.17         0.53        16.90        59.67        18.25 
TCGA-29-1707 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       41.95        34.62        85.68        62.93        39.09        31.23 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       22.98        24.36        22.52        12.36        11.84        12.30 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 
        8.35         7.20         5.36        34.62        86.17        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
       45.11         4.87        42.25        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       51.91        36.26         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       44.91        34.78        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2552 TCGA-42-2582 
       20.98        18.31        20.52        14.17        11.47        14.30 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 
        9.44         7.56         7.46         7.63        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
        1.74        22.32        28.96        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       35.80         2.43         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       13.02         9.07        34.13        31.30        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 
       48.92        56.58        43.43        15.75         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 
        1.18        45.96        45.40         4.80        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 
       76.83        20.68        44.52       125.72        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.53              0.26 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           115.89            180.16 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            22.22             28.73 
[1] "0.5 - 115.9 (22.2)" "0.3 - 180.2 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D12V2, continuous
D12V3, multiclass
                    clus
vv                   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  OMENTUM                          1                 1
  OVARY                           64               484
  PERITONEUM (OVARY)               0                 2
D12V4, continuous
D12V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      0   65
  6Q GAIN WILD-TYPE    3  484
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                0                 3
  YES              65               484
D12V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     49   16
  6Q GAIN WILD-TYPE  399   88
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO               49               399
  YES              16                88

Clustering(13) Variable = 7p gain mutation analysis
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    64  70
  7P GAIN WILD-TYPE 197 215
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              134               412 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               70               215 
$`7P GAIN MUTATED`
TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1351 TCGA-04-1364 TCGA-04-1367 
        2.01        18.51        65.49        65.46        33.67        71.47 
TCGA-04-1371 TCGA-04-1542 TCGA-04-1646 TCGA-04-1649 TCGA-04-1652 TCGA-04-1655 
       82.36        84.20        27.88        64.64        31.86        45.34 
TCGA-09-0365 TCGA-09-0367 TCGA-09-1665 TCGA-09-1672 TCGA-09-1674 TCGA-09-2043 
        9.47        17.95        41.59         5.85         8.55         6.15 
TCGA-09-2049 TCGA-09-2054 TCGA-10-0926 TCGA-13-0717 TCGA-13-0730 TCGA-13-0757 
      112.37        20.91        25.91        24.59        17.79        11.18 
TCGA-13-0760 TCGA-13-0762 TCGA-13-0791 TCGA-13-0807 TCGA-13-0883 TCGA-13-0886 
       11.54        32.25        38.93        13.61        68.91        74.27 
TCGA-13-0888 TCGA-13-0899 TCGA-13-0901 TCGA-13-0904 TCGA-13-0921 TCGA-13-1407 
       70.39        56.15        19.36        48.33         4.64         6.05 
TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1482 TCGA-13-1484 
        5.92         4.70         4.21         5.33        61.71        98.04 
TCGA-13-1485 TCGA-13-1488 TCGA-13-1489 TCGA-13-1496 TCGA-13-1498 TCGA-13-1504 
       20.68        70.82        82.88         4.24        37.61        16.57 
TCGA-13-2059 TCGA-13-2060 TCGA-20-0991 TCGA-20-1686 TCGA-23-1021 TCGA-23-1023 
       12.23         8.58        26.20         2.93        47.54        40.54 
TCGA-23-1024 TCGA-23-1111 TCGA-23-1114 TCGA-23-1116 TCGA-23-1121 TCGA-23-1124 
       15.39         3.22        68.68         4.57         6.38        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2079 TCGA-23-2081 TCGA-24-0980 TCGA-24-1424 
        0.53        24.95        91.66        77.00         7.66         6.02 
TCGA-24-1428 TCGA-24-1431 TCGA-24-1436 TCGA-24-1474 TCGA-24-1557 TCGA-24-1558 
       17.36        19.17         8.55        22.19        39.88        19.53 
TCGA-24-1564 TCGA-24-1604 TCGA-24-1842 TCGA-24-1845 TCGA-24-2019 TCGA-24-2020 
       25.87        88.34         8.32         3.81         4.87       151.99 
TCGA-24-2026 TCGA-24-2030 TCGA-24-2038 TCGA-24-2261 TCGA-24-2288 TCGA-24-2289 
       34.82        53.95        44.48         0.79         0.82        67.36 
TCGA-24-2290 TCGA-24-2295 TCGA-25-1312 TCGA-25-1320 TCGA-25-1323 TCGA-25-1627 
       36.23        33.11         1.02        36.95        12.00         0.36 
TCGA-25-1628 TCGA-25-1870 TCGA-25-1871 TCGA-25-2397 TCGA-29-1695 TCGA-29-1698 
       20.58        14.93        24.99        12.00         0.79        68.28 
TCGA-29-1699 TCGA-29-1707 TCGA-29-1710 TCGA-29-1764 TCGA-29-1775 TCGA-29-1778 
        0.53        41.95        29.23        62.93        12.36        14.93 
TCGA-29-1783 TCGA-29-2428 TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
        7.20        45.11         4.87        11.84        11.47         9.76 
TCGA-30-1856 TCGA-30-1862 TCGA-30-1867 TCGA-31-1950 TCGA-36-2529 TCGA-57-1582 
       15.68         6.08         1.18        18.77        35.05        24.03 
TCGA-59-2349 TCGA-59-2372 TCGA-61-1730 TCGA-61-1734 TCGA-61-1737 TCGA-61-1743 
       80.12        44.78         4.34        28.47        44.84        43.69 
TCGA-61-1899 TCGA-61-1904 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-2003 
        8.42         9.07        31.30        37.02        42.48         3.98 
TCGA-61-2088 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 
        4.77        65.49        55.50         6.48        76.83        44.52 
TCGA-61-2113 TCGA-61-2614 
       22.22         8.58 

$`7P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00         1.81        49.15        46.62        11.87 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 
       63.06        48.76        21.57        63.98        49.28        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       44.32        76.54        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1651 
      119.08        29.06        55.40        48.89        28.64        36.23 
TCGA-04-1654 TCGA-09-0364 TCGA-09-0366 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
       47.70        29.16        57.73        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       89.33        74.89        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
       17.98         3.02        97.55         6.12        35.15         4.50 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       71.11        63.09        39.75        26.93        12.46        54.31 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 
       35.41        35.80        15.12        19.86         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 
       39.58         2.73        12.39        31.07        15.19        55.17 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
        2.47        11.38        34.06        31.04        21.40         8.42 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
      107.18        91.40        66.64        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 
       43.36        57.47        57.07        47.38        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       14.89        13.81         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1409 TCGA-13-1477 TCGA-13-1481 TCGA-13-1483 TCGA-13-1487 
        7.36         6.84        54.61        87.06        29.39        22.39 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1499 
       52.44        73.55        38.17        49.22        54.31        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       13.97        32.84         4.21         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2061 TCGA-13-2065 
        2.56         3.88         3.09        14.24        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
        6.28        23.05        25.94        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1022 TCGA-23-1026 TCGA-23-1027 
       19.07        16.67         2.66        42.51        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1113 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       54.51        31.20        33.30        86.01       129.96         4.27 
TCGA-23-1122 TCGA-23-1123 TCGA-23-2077 TCGA-23-2078 TCGA-23-2084 TCGA-23-2641 
       39.09        33.47       115.89        87.48        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
       41.56        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 
        5.95         5.36         4.80        28.34        18.67        43.53 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        1.18        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       44.09        45.50        47.70        10.26        17.23        90.15 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 
       48.33        38.24         3.48         3.72         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
       11.05        81.11        44.84        58.16       109.68        14.43 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 
       18.48        28.18        64.01        57.07        36.16         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2293 TCGA-24-2297 
       47.54        31.63        70.45        44.58        16.64        55.86 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
       53.26        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 
       34.98        65.00        33.96         2.99         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
       18.02        15.78         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       35.54        51.22        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
        1.02        38.04         3.02        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1701 
       47.18       101.75        38.53        33.70        31.17        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       18.64        59.67        18.25        34.62        17.00        85.68 
TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       66.77        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 
       17.29        11.84        12.30         8.35         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2431 TCGA-30-1714 TCGA-30-1718 
       86.17        65.00        62.47        42.25        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
       36.26         2.47         0.26        48.07        44.91        34.78 
TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
       36.62        57.57        24.26        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       30.18        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       28.73        29.06        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 
       30.05        25.74        27.85        24.23        24.69        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 
        2.24        20.98        18.31        20.52        14.17        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       11.47        14.30         9.44         7.56         7.46         7.63 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
       11.38        21.14         1.74        22.32        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
       25.02       180.16        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        2.14         5.39        11.11         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 
       18.54        27.88        31.76        48.79        35.80         2.43 
TCGA-61-1741 TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 
       33.67         1.41         5.79        11.41        13.02        34.13 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       48.92        56.58        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 
        1.97         5.52        14.50        17.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 
       30.64         1.18        45.96        45.40         4.80        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2109 TCGA-61-2111 
       71.74        61.64        58.39        60.62        20.68       125.72 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
       51.91        15.88         6.35        31.07 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.36              0.26 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           151.99            180.16 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            21.55             29.44 
[1] "0.4 - 152.0 (21.6)" "0.3 - 180.2 (29.4)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
[1] "hr=" "1"  
D13V2, continuous
D13V3, multiclass
                    clus
vv                   7P GAIN MUTATED 7P GAIN WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          133               415
  PERITONEUM (OVARY)               1                 1
D13V4, continuous
D13V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      0  135
  7P GAIN WILD-TYPE    3  414
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO                0                 3
  YES             135               414
D13V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED    107   28
  7P GAIN WILD-TYPE  341   76
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO              107               341
  YES              28                76

Clustering(14) Variable = 7q gain mutation analysis
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    74  99
  7Q GAIN WILD-TYPE 187 186
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              173               373 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               99               186 
$`7Q GAIN MUTATED`
TCGA-04-1337 TCGA-04-1342 TCGA-04-1347 TCGA-04-1351 TCGA-04-1364 TCGA-04-1367 
        2.01        18.51        63.06        65.46        33.67        71.47 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1536 TCGA-04-1542 TCGA-04-1646 
       56.55        41.59        19.99        29.06        84.20        27.88 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 TCGA-09-0365 TCGA-09-1661 
       64.64        36.23        31.86        45.34         9.47        38.43 
TCGA-09-1665 TCGA-09-1672 TCGA-09-1674 TCGA-09-2043 TCGA-09-2045 TCGA-09-2049 
       41.59         5.85         8.55         6.15        35.15       112.37 
TCGA-10-0926 TCGA-10-0927 TCGA-13-0717 TCGA-13-0730 TCGA-13-0757 TCGA-13-0760 
       25.91        81.47        24.59        17.79        11.18        11.54 
TCGA-13-0762 TCGA-13-0766 TCGA-13-0791 TCGA-13-0795 TCGA-13-0797 TCGA-13-0803 
       32.25        21.40        38.93        19.56         8.71        43.82 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0888 TCGA-13-0899 
       35.28        13.61        68.91        91.40        70.39        56.15 
TCGA-13-0901 TCGA-13-0904 TCGA-13-0921 TCGA-13-1407 TCGA-13-1410 TCGA-13-1411 
       19.36        48.33         4.64         6.05         4.70         4.21 
TCGA-13-1412 TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1496 
        5.33        61.71        98.04        20.68        70.82         4.24 
TCGA-13-1506 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-20-0991 TCGA-20-1686 
        4.41        12.23         8.58        10.78        26.20         2.93 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1031 TCGA-23-1111 TCGA-23-1113 
       47.54        42.51        15.39        18.87         3.22        31.20 
TCGA-23-1114 TCGA-23-1121 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2079 
       68.68         6.38        58.13         0.53        24.95        91.66 
TCGA-23-2081 TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 TCGA-24-0980 TCGA-24-1104 
       77.00         2.76         7.63        19.63         7.66        63.55 
TCGA-24-1424 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1436 TCGA-24-1466 
        6.02        17.36        28.34        19.17         8.55        45.14 
TCGA-24-1474 TCGA-24-1546 TCGA-24-1548 TCGA-24-1553 TCGA-24-1557 TCGA-24-1558 
       22.19        64.27        16.21        58.09        39.88        19.53 
TCGA-24-1604 TCGA-24-1844 TCGA-24-1845 TCGA-24-1924 TCGA-24-2019 TCGA-24-2020 
       88.34         3.72         3.81        30.21         4.87       151.99 
TCGA-24-2026 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2038 TCGA-24-2254 
       34.82        53.95        18.48        28.18        44.48        57.07 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2290 TCGA-24-2295 TCGA-25-1312 
        0.79         0.36        47.54        36.23        33.11         1.02 
TCGA-25-1315 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1627 
       51.06        36.95         2.99        12.00        18.58         0.36 
TCGA-25-1628 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2397 TCGA-25-2398 
       20.58        14.93        24.99        85.05        12.00        45.01 
TCGA-25-2400 TCGA-25-2401 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 TCGA-29-1707 
       42.02         2.96         0.79        68.28         0.53        41.95 
TCGA-29-1764 TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 TCGA-29-2428 
       62.93        12.36        12.30        14.93         7.20        45.11 
TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 
        4.87        11.84        11.47        36.26        15.68         0.26 
TCGA-30-1862 TCGA-30-1867 TCGA-31-1944 TCGA-31-1950 TCGA-36-1568 TCGA-36-2529 
        6.08         1.18        45.57        18.77        28.73        35.05 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-42-2582 TCGA-42-2590 TCGA-57-1582 
       18.31        20.52        14.17        14.30         7.46        24.03 
TCGA-57-1586 TCGA-59-2349 TCGA-59-2372 TCGA-61-1725 TCGA-61-1730 TCGA-61-1734 
       22.32        80.12        44.78        31.40         4.34        28.47 
TCGA-61-1737 TCGA-61-1743 TCGA-61-1899 TCGA-61-1901 TCGA-61-1904 TCGA-61-1907 
       44.84        43.69         8.42        11.41         9.07        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-2003 TCGA-61-2088 TCGA-61-2098 TCGA-61-2101 
       37.02        42.48         3.98         4.77        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 TCGA-61-2113 TCGA-61-2614 
        6.48        76.83        44.52        22.22         8.58 

$`7Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00         1.81        49.15        46.62        11.87 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 
       65.49        48.76        21.57        63.98        49.28        32.52 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1371 TCGA-04-1525 TCGA-04-1530 TCGA-04-1638 
       44.32        76.54        82.36        38.37       119.08        55.40 
TCGA-04-1644 TCGA-04-1648 TCGA-04-1654 TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 
       48.89        28.64        47.70        29.16        57.73        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 
       35.54         9.96        89.33        74.89        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 TCGA-09-2044 
       55.36        30.48        17.98         3.02        97.55         6.12 
TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
        4.50        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       12.46        54.31        18.48        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       44.55        39.58         2.73        12.39        31.07        15.19 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 TCGA-13-0761 TCGA-13-0764 TCGA-13-0768 
       55.17         2.47        11.38        34.06        31.04         8.42 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       36.72        28.70        30.35         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0804 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 
        8.19        35.28       107.18        74.27        66.64        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 
       67.99        69.01        43.36        57.47        57.07        47.38 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 
       29.98        21.14        14.89        13.81         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 TCGA-13-1477 
       10.88         6.61         7.36         5.92         6.84        54.61 
TCGA-13-1481 TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       87.06        29.39        22.39        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       38.17        49.22        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       32.84        16.57         4.21         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
        3.88         3.09        14.24         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       25.94        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1687 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
        2.66        40.54        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1116 TCGA-23-1117 
       29.10         2.24        51.35        54.51         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-2077 
       86.01       129.96         4.27        39.09        33.47       115.89 
TCGA-23-2078 TCGA-23-2084 TCGA-23-2643 TCGA-23-2645 TCGA-24-0970 TCGA-24-0975 
       87.48        49.84         4.70         4.50        11.64        21.80 
TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       41.56        22.32        54.08        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 
        7.82         7.99         7.86         0.76         6.25         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 
        5.36         4.80        18.67        43.53        72.92        12.46 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 
      105.99         9.11         3.42         1.18        26.96        57.37 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1556 
       56.58        41.06        51.91        41.39        88.50        70.62 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1846 
       90.15        48.33        38.24         8.32         3.48         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 
       11.28         5.75         5.49         9.80        22.65        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
       11.05        81.11        44.84        58.16       109.68        14.43 
TCGA-24-2036 TCGA-24-2260 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
       64.01        36.16        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 
       67.36        16.64        55.86        53.26        26.93        31.99 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1329 
       37.02         1.02        34.98        65.00        33.96         2.96 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
       18.02        15.78         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1877 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       35.54        51.22        18.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2399 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       38.04         3.02        19.99        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 
       78.87        44.71        47.18       101.75        38.53        33.70 
TCGA-29-1697 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1710 
       31.17        16.90        18.64        59.67        18.25        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 
       34.62        17.00        85.68        66.77        39.09        31.23 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1781 
       22.98        24.36        22.52        17.29        11.84         8.35 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2431 
        5.36        34.62        86.17        65.00        62.47        42.25 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1859 TCGA-30-1860 
        9.76        38.07        51.91         2.47        48.07        44.91 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       34.78        36.62        57.57        24.26        30.05        48.79 
TCGA-31-1946 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       30.18        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       29.06        21.53        22.85        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 
       25.74        27.85        24.23        24.69        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2551 TCGA-36-2552 TCGA-42-2588 TCGA-42-2589 TCGA-42-2591 
       20.98        16.14        11.47         9.44         7.56         7.63 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       11.38        21.14         1.74        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
      180.16        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1727 TCGA-61-1728 
        5.39        11.11         8.05        20.94        18.54        27.88 
TCGA-61-1733 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 
       31.76        48.79        35.80         2.43        33.67         1.41 
TCGA-61-1900 TCGA-61-1903 TCGA-61-1906 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
        5.79        13.02        34.13        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
       17.98        30.61        39.85        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
       45.40         4.80        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2109 TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       60.62        20.68       125.72        51.91        15.88         6.35 
TCGA-61-2613 
       31.07 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.26              0.30 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           151.99            180.16 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            22.32             29.49 
[1] "0.3 - 152.0 (22.3)" "0.3 - 180.2 (29.5)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
[1] "hr=" "1.3"
D14V2, continuous
D14V3, multiclass
                    clus
vv                   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          175               373
  PERITONEUM (OVARY)               1                 1
D14V4, continuous
D14V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      0  177
  7Q GAIN WILD-TYPE    3  372
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO                0                 3
  YES             177               372
D14V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED    139   38
  7Q GAIN WILD-TYPE  309   66
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO              139               309
  YES              38                66

Clustering(15) Variable = 8p gain mutation analysis
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    27  44
  8P GAIN WILD-TYPE 234 241
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               71               475 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               44               241 
$`8P GAIN MUTATED`
TCGA-04-1342 TCGA-04-1343 TCGA-04-1347 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 
       18.51        11.87        63.06        21.57        63.98        49.28 
TCGA-04-1362 TCGA-09-0365 TCGA-09-0369 TCGA-09-1659 TCGA-09-1665 TCGA-09-1672 
       44.32         9.47        35.54         9.96        41.59         5.85 
TCGA-10-0933 TCGA-10-0935 TCGA-10-0937 TCGA-13-0717 TCGA-13-0800 TCGA-13-0884 
       11.70        35.41        15.12        24.59         8.12       107.18 
TCGA-13-0908 TCGA-13-0923 TCGA-13-1409 TCGA-13-1485 TCGA-13-1488 TCGA-13-1499 
       44.84         6.41         6.84        20.68        70.82        38.37 
TCGA-13-1506 TCGA-13-2057 TCGA-20-1683 TCGA-20-1687 TCGA-23-1029 TCGA-23-1109 
        4.41        14.24        25.38         2.66         8.81        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1119 TCGA-24-1463 TCGA-24-1552 TCGA-24-1556 
       54.51         3.22       129.96        72.92        41.39        70.62 
TCGA-24-1557 TCGA-24-1847 TCGA-24-2020 TCGA-24-2027 TCGA-24-2033 TCGA-25-1317 
       39.88        11.28       151.99       109.68        18.48         1.02 
TCGA-25-1329 TCGA-25-1628 TCGA-25-1632 TCGA-25-1877 TCGA-25-2398 TCGA-25-2401 
        2.96        20.58        56.94        18.05        45.01         2.96 
TCGA-29-1691 TCGA-29-1696 TCGA-29-1764 TCGA-29-1776 TCGA-29-1778 TCGA-29-1785 
       47.18        33.70        62.93        11.84        14.93        34.62 
TCGA-29-2431 TCGA-30-1714 TCGA-30-1853 TCGA-30-1861 TCGA-30-1892 TCGA-36-1569 
       42.25        38.07        36.26        34.78        48.79        29.06 
TCGA-36-2548 TCGA-57-1582 TCGA-57-1584 TCGA-61-1736 TCGA-61-1743 TCGA-61-1906 
       14.17        24.03        21.14        48.79        43.69        34.13 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2088 TCGA-61-2614 
        3.98        30.61        39.85         4.77         8.58 

$`8P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1351 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 
       65.49        48.76        65.46        32.52        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       29.16        57.73        17.95        38.43        89.33        74.89 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 
       57.57        61.87        55.36        30.48        17.98         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        8.55        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
      112.37        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 
       32.28         3.88        35.80        19.86         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 
       28.70        30.35        19.56         8.71         7.79         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       69.01        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        47.84        44.94        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        4.70         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       29.39        98.04        22.39        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 
       38.17        49.22         4.24        54.31        37.61        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       32.84        16.57         4.21         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
        3.88         3.09        12.23         8.58        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        6.28        23.05        25.94        26.20        72.20        27.48 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       19.07        16.67         2.93        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 
       15.39        26.83        31.73        49.41        29.10        18.87 
TCGA-23-1032 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        2.24        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 
        4.27         6.38        39.09        33.47        58.13         0.53 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
       24.95       115.89        87.48        91.66        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        0.76         6.25         6.02         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
       17.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1558 TCGA-24-1560 
       41.06        51.91        58.09        88.50        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       45.50        47.70        25.87        10.26        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       88.34        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        3.81         4.37         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 
       30.21        16.41        11.05        81.11         4.87        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 
       58.16        34.82        14.43        53.95        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       44.48        57.07        36.16         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
       31.63        70.45        44.58         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       16.64        33.11        55.86        53.26         1.02        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
       31.99        51.06        37.02        34.98        65.00        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       33.96         2.99        12.00        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
        0.36         7.86         0.30        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       14.93        24.99        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 TCGA-25-2404 
       38.04         3.02        12.00        19.99        42.02        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 
       30.97        26.96        78.87        44.71       101.75        38.53 
TCGA-29-1695 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
        0.79        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 
       85.68        66.77        39.09        31.23        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 
       22.52        17.29        12.36        12.30         8.35         7.20 
TCGA-29-1784 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
        5.36        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 
       11.84        11.47         9.76        51.91         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
        0.26        48.07        44.91         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       57.57        24.26        30.05        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.79        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       20.98        18.31        20.52        16.14        11.47        14.30 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 TCGA-57-1585 
        9.44         7.56         7.46         7.63        11.38         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1737 TCGA-61-1738 
       27.88         4.34        31.76        28.47        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
        2.43        33.67         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       13.02         9.07        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       56.58        67.73        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
        5.52        14.50        17.98        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
       45.40         4.80        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       60.62        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       44.52       125.72        22.22        51.91        15.88         6.35 
TCGA-61-2613 
       31.07 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             1.02              0.26 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           151.99            180.16 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            30.61             28.18 
[1] "1.0 - 152.0 (30.6)" "0.3 - 180.2 (28.2)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
[1] "hr=" "1.1"
D15V2, continuous
D15V3, multiclass
                    clus
vv                   8P GAIN MUTATED 8P GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           71               477
  PERITONEUM (OVARY)               0                 2
D15V4, continuous
D15V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      1   70
  8P GAIN WILD-TYPE    2  479
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                1                 2
  YES              70               479
D15V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     52   19
  8P GAIN WILD-TYPE  396   85
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO               52               396
  YES              19                85

Clustering(16) Variable = 8q gain mutation analysis
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED   112 141
  8Q GAIN WILD-TYPE 149 144
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              253               293 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              141               144 
$`8Q GAIN MUTATED`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 TCGA-04-1343 
       41.00         1.81        49.15        46.62        18.51        11.87 
TCGA-04-1347 TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 
       63.06        21.57        65.46        49.28        32.52        44.32 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1525 TCGA-04-1536 TCGA-04-1542 TCGA-04-1646 
       33.67        76.54        38.37        29.06        84.20        27.88 
TCGA-04-1652 TCGA-04-1654 TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       31.86        47.70         9.47        17.95        35.54         9.96 
TCGA-09-1665 TCGA-09-1670 TCGA-09-1672 TCGA-09-2043 TCGA-09-2050 TCGA-09-2055 
       41.59        17.98         5.85         6.15        71.11        26.93 
TCGA-10-0925 TCGA-10-0933 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       54.31        11.70        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0724 TCGA-13-0726 TCGA-13-0751 TCGA-13-0755 
        6.21        24.59         2.73        31.07        55.17         2.47 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0792 TCGA-13-0800 TCGA-13-0802 TCGA-13-0807 
       11.54        34.06        36.72         8.12         8.19        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       68.91       107.18        43.36        57.47        56.15        57.07 
TCGA-13-0903 TCGA-13-0908 TCGA-13-0911 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 
       47.38        44.84        27.68        14.89         4.64         6.41 
TCGA-13-0924 TCGA-13-1404 TCGA-13-1410 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 
        6.08         6.61         4.70        98.04        20.68        70.82 
TCGA-13-1489 TCGA-13-1494 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 
       82.88        38.17        38.37        13.97        32.84         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2060 
        4.41         4.77         3.88         3.09        12.23         8.58 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 
        6.28        23.05        26.20        25.38        16.67         2.93 
TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1029 TCGA-23-1031 
        2.66        42.51        40.54        26.83         8.81        18.87 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1119 
       51.35        54.51         3.22         4.57        33.30       129.96 
TCGA-23-1121 TCGA-23-1124 TCGA-23-2072 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 
        6.38        58.13        24.95        87.48        77.00        49.84 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0979 TCGA-24-1103 TCGA-24-1105 TCGA-24-1419 
        4.70         4.50        41.56        54.08        47.41         7.86 
TCGA-24-1422 TCGA-24-1425 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
        0.76         5.95        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1545 TCGA-24-1546 TCGA-24-1552 TCGA-24-1553 
       45.14       105.99        57.37        64.27        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1563 TCGA-24-1844 TCGA-24-1846 
       88.50        70.62        39.88        47.70         3.72         4.37 
TCGA-24-1847 TCGA-24-1924 TCGA-24-1927 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       11.28        30.21        16.41         4.87       151.99        44.84 
TCGA-24-2027 TCGA-24-2033 TCGA-24-2035 TCGA-24-2271 TCGA-24-2281 TCGA-24-2289 
      109.68        18.48        28.18        31.63        44.58        67.36 
TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 TCGA-25-1317 
       36.23        33.11        55.86         1.02        26.93         1.02 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       33.96         2.99        12.00         2.96        18.58        18.02 
TCGA-25-1628 TCGA-25-1632 TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       20.58        56.94        51.22        18.05        85.05        13.02 
TCGA-25-2392 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 
        1.02        12.00        45.01        19.99         2.96        29.00 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       33.70        68.28        16.90        18.64        59.67        18.25 
TCGA-29-1764 TCGA-29-1768 TCGA-29-1770 TCGA-29-1776 TCGA-29-1778 TCGA-29-1781 
       62.93        31.23        24.36        11.84        14.93         8.35 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2431 TCGA-29-2432 
        5.36        34.62        65.00        62.47        42.25        11.84 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1857 TCGA-30-1859 
        9.76        38.07        51.91        36.26         0.26        48.07 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       34.78         6.08        24.26        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1955 TCGA-31-1959 TCGA-36-1569 TCGA-36-1570 
       18.77        22.45        42.51         2.17        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1580 TCGA-36-2530 TCGA-36-2542 
       22.85        22.55        30.05        24.23        33.01        21.60 
TCGA-36-2545 TCGA-36-2548 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       18.31        14.17        14.30         9.44         7.56         7.46 
TCGA-57-1582 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-59-2348 TCGA-59-2354 
       24.03        21.14         1.74        22.32       180.16        34.39 
TCGA-59-2355 TCGA-59-2372 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
        2.14        44.78        20.94        31.40        18.54        27.88 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1740 TCGA-61-1743 TCGA-61-1900 TCGA-61-1906 
       48.79        44.84         2.43        43.69         5.79        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 TCGA-61-1918 TCGA-61-1919 
       31.30        37.02        48.92        56.58        15.75        38.17 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 
        5.52        14.50         3.98        30.61        39.85         1.18 
TCGA-61-2088 TCGA-61-2097 TCGA-61-2102 TCGA-61-2109 TCGA-61-2610 TCGA-61-2612 
        4.77        60.62         6.48        20.68        51.91         6.35 
TCGA-61-2614 
        8.58 

$`8Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1337 TCGA-04-1346 TCGA-04-1348 TCGA-04-1350 TCGA-04-1367 
       40.24         2.01        65.49        48.76        63.98        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1530 TCGA-04-1638 
       82.36        56.55        41.59        19.99       119.08        55.40 
TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1655 TCGA-09-0364 
       48.89        28.64        64.64        36.23        45.34        29.16 
TCGA-09-0366 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 
       57.73        38.43        89.33        74.89        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2044 
       55.36        30.48         3.02         8.55        97.55         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
       35.15         4.50       112.37        63.09        39.75        20.91 
TCGA-09-2056 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       12.46        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0934 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 
        3.88        44.55        39.58        12.39        15.19        17.79 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.18        11.38        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       38.93        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0885 TCGA-13-0886 
        8.28        43.82        35.28        35.28        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0901 
       66.64        70.39        61.81        67.99        69.01        19.36 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 
       48.33        47.84        44.94        37.08        34.06        29.98 
TCGA-13-0916 TCGA-13-0920 TCGA-13-1403 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
       21.14        13.81        10.88         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        6.84         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1487 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1496 
       29.39        22.39        52.44        73.55        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1504 TCGA-13-1509 TCGA-13-1510 TCGA-13-2057 
       54.31        37.61        16.57         4.14         2.56        14.24 
TCGA-13-2061 TCGA-13-2065 TCGA-20-0990 TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 
       10.78         8.75        25.94        72.20        27.48        19.07 
TCGA-23-1021 TCGA-23-1024 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1032 
       47.54        15.39        31.73        49.41        29.10         2.24 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 
       31.20        68.68        86.01         4.27        39.09        33.47 
TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 
        0.53       115.89        91.66         2.76         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 TCGA-24-1413 
       11.64        21.80         7.66        22.32        63.55         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 
        6.38         7.82         7.99         6.25         6.02         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1469 
        4.80        17.36        28.34        19.17        18.67         9.11 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1548 TCGA-24-1549 
        3.42         1.18        22.19        26.96        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1564 
       41.06        51.91        19.53        44.09        45.50        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       10.26        17.23        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1845 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        8.32         3.48         3.81         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1928 TCGA-24-1930 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 
       22.65        11.05        81.11        58.16        34.82        14.43 
TCGA-24-2030 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       53.95        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2280 TCGA-24-2288 TCGA-24-2293 TCGA-24-2298 
        0.36        47.54        70.45         0.82        16.64        53.26 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
       31.99        51.06        37.02        34.98        65.00        36.95 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 
       15.78         0.36         7.86         0.30        60.59        35.54 
TCGA-25-1870 TCGA-25-1871 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2400 
       14.93        24.99        49.05        38.04         3.02        42.02 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1697 TCGA-29-1699 TCGA-29-1707 TCGA-29-1710 
       30.97        26.96        31.17         0.53        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 TCGA-29-1769 
       34.62        17.00        85.68        66.77        39.09        22.98 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1783 TCGA-29-2414 
       22.52        17.29        12.36        12.30         7.20        86.17 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2434 TCGA-30-1855 TCGA-30-1856 TCGA-30-1860 
       45.11         4.87        11.47         2.47        15.68        44.91 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-31-1953 TCGA-31-1956 
       36.62         1.18        57.57        30.05         6.71        44.09 
TCGA-36-1568 TCGA-36-1575 TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 
       28.73         8.55        25.74        27.85        24.69        35.05 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2543 
       29.49        29.79        25.91        25.08        23.80         2.24 
TCGA-36-2544 TCGA-36-2547 TCGA-36-2551 TCGA-36-2552 TCGA-42-2591 TCGA-57-1583 
       20.98        20.52        16.14        11.47         7.63        11.38 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       28.96        25.05        25.02        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1730 TCGA-61-1733 
        9.40         5.39        11.11         8.05         4.34        31.76 
TCGA-61-1734 TCGA-61-1738 TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 
       28.47        35.80        33.67         1.41         8.42        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1911 TCGA-61-1915 TCGA-61-1917 TCGA-61-1995 
       13.02         9.07        42.48        67.73        43.43         1.97 
TCGA-61-2002 TCGA-61-2012 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 
       17.98        30.64        45.96        45.40         4.80        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 
       71.74        61.64        58.39        65.49        55.50        76.83 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2611 TCGA-61-2613 
       44.52       125.72        22.22        15.88        31.07 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.26              0.30 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           180.16            125.72 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            27.68             28.73 
[1] "0.3 - 180.2 (27.7)" "0.3 - 125.7 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
[1] "hr=" "1.2"
D16V2, continuous
D16V3, multiclass
                    clus
vv                   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          254               294
  PERITONEUM (OVARY)               0                 2
D16V4, continuous
D16V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      1  254
  8Q GAIN WILD-TYPE    2  295
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO                1                 2
  YES             254               295
D16V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED    201   54
  8Q GAIN WILD-TYPE  247   50
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO              201               247
  YES              54                50

Clustering(17) Variable = 9p gain mutation analysis
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    33  36
  9P GAIN WILD-TYPE 228 249
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               69               477 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               36               249 
$`9P GAIN MUTATED`
TCGA-04-1332 TCGA-04-1516 TCGA-09-2045 TCGA-09-2051 TCGA-10-0933 TCGA-10-0935 
       41.00        41.59        35.15        63.09        11.70        35.41 
TCGA-13-0723 TCGA-13-0730 TCGA-13-0764 TCGA-13-0792 TCGA-13-0799 TCGA-13-0807 
       39.58        17.79        31.04        36.72         7.79        13.61 
TCGA-13-0884 TCGA-13-0893 TCGA-13-0911 TCGA-13-1488 TCGA-13-1497 TCGA-13-1505 
      107.18        43.36        27.68        70.82        54.31         4.21 
TCGA-13-1507 TCGA-20-0990 TCGA-20-1683 TCGA-23-1024 TCGA-23-1026 TCGA-23-1032 
        4.77        25.94        25.38        15.39        26.83         2.24 
TCGA-23-1110 TCGA-23-1121 TCGA-23-1809 TCGA-23-2084 TCGA-24-0979 TCGA-24-0980 
       54.51         6.38         0.53        49.84        41.56         7.66 
TCGA-24-1417 TCGA-24-1425 TCGA-24-1428 TCGA-24-1436 TCGA-24-1466 TCGA-24-1470 
        7.82         5.95        17.36         8.55        45.14         3.42 
TCGA-24-1544 TCGA-24-1553 TCGA-24-1556 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 
       26.96        58.09        70.62         8.32         3.72         3.81 
TCGA-24-1847 TCGA-24-1850 TCGA-24-1924 TCGA-24-1928 TCGA-24-2026 TCGA-24-2280 
       11.28         5.49        30.21        11.05        34.82        70.45 
TCGA-24-2298 TCGA-25-1315 TCGA-25-1319 TCGA-25-1320 TCGA-25-1329 TCGA-25-1878 
       53.26        51.06        65.00        36.95         2.96        85.05 
TCGA-25-2396 TCGA-25-2404 TCGA-29-1762 TCGA-29-1763 TCGA-29-1768 TCGA-30-1859 
        3.02        29.00        85.68        66.77        31.23        48.07 
TCGA-30-1862 TCGA-30-1867 TCGA-36-2532 TCGA-42-2591 TCGA-61-1741 TCGA-61-1895 
        6.08         1.18        29.49         7.63        33.67         1.41 
TCGA-61-2008 TCGA-61-2087 TCGA-61-2111 
       30.61         4.80       125.72 

$`9P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24         1.81        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       71.47        82.36        56.55        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       30.48        17.98         5.85         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 
        6.15         6.12         4.50       112.37        71.11        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 
       18.48        33.24        32.28         3.88        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 
       19.86         6.21        24.59        44.55         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       31.07        15.19        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       11.54        34.06        32.25        21.40         8.42        38.93 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0800 TCGA-13-0801 
       28.70        30.35        19.56         8.71         8.12         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0885 
        8.19        43.82        35.28        35.28        68.91        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       74.27        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       57.47        56.15        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 
       47.84        44.94        44.84        37.08        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       21.14        14.89        13.81         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       10.88         6.61         7.36         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        4.70         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 
       29.39        98.04        20.68        22.39        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 
       73.55        38.17        49.22         4.24        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 
       13.97        32.84        16.57         4.41         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        3.88         3.09        14.24        12.23         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        8.75         6.28        23.05        26.20        72.20        27.48 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
       19.07        16.67         2.93         2.66        47.54        42.51 
TCGA-23-1023 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       40.54        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       51.35         3.22        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
       86.01       129.96         4.27        39.09        33.47        58.13 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 
       24.95       115.89        87.48        91.66        77.00         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 
        7.99         7.86         0.76         6.25         6.02         5.36 
TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 
        4.80        28.34        19.17        18.67        43.53        72.92 
TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1471 TCGA-24-1474 TCGA-24-1545 
       12.46       105.99         9.11         1.18        22.19        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       88.50        39.88        19.53        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       25.87        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1843 TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 
       38.24         3.48         4.37         5.75         9.80        22.65 
TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       16.41        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
      109.68        14.43        53.95        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       44.48        57.07        36.16         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       31.63        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1316 
       33.11        55.86         1.02        26.93        31.99        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 
        1.02        34.98        33.96         2.99        12.00        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 
       18.05        13.02        49.05         1.02        38.04        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 
       45.01        19.99        42.02         2.96        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       62.93        39.09        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       12.36        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        5.36        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
        4.87        42.25        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 
       51.91        36.26         2.47        15.68         0.26        44.91 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       34.78        36.62        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.55         8.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       24.69        35.05        33.01        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
       14.17        16.14        11.47        14.30         9.44         7.56 
TCGA-42-2590 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.46        24.03        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
        2.43        43.69         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
        9.07        34.13        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       56.58        67.73        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 
        5.52        14.50        17.98         3.98        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
        1.18        45.96        45.40         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       76.83        20.68        44.52        22.22        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.53              0.26 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           125.72            180.16 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            29.00             28.34 
[1] "0.5 - 125.7 (29.0)" "0.3 - 180.2 (28.3)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D17V2, continuous
D17V3, multiclass
                    clus
vv                   9P GAIN MUTATED 9P GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           70               478
  PERITONEUM (OVARY)               0                 2
D17V4, continuous
D17V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      0   70
  9P GAIN WILD-TYPE    3  479
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                0                 3
  YES              70               479
D17V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     58   12
  9P GAIN WILD-TYPE  390   92
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO               58               390
  YES              12                92

Clustering(18) Variable = 9q gain mutation analysis
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    13  15
  9Q GAIN WILD-TYPE 248 270
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               28               518 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               15               270 
$`9Q GAIN MUTATED`
TCGA-04-1337 TCGA-04-1362 TCGA-04-1516 TCGA-13-0723 TCGA-13-0893 TCGA-13-0911 
        2.01        44.32        41.59        39.58        43.36        27.68 
TCGA-13-1488 TCGA-20-1683 TCGA-23-1809 TCGA-23-2084 TCGA-24-0980 TCGA-24-1466 
       70.82        25.38         0.53        49.84         7.66        45.14 
TCGA-24-1552 TCGA-24-1842 TCGA-24-1847 TCGA-24-1850 TCGA-24-2280 TCGA-25-1329 
       41.39         8.32        11.28         5.49        70.45         2.96 
TCGA-25-1635 TCGA-25-2404 TCGA-29-1691 TCGA-29-1762 TCGA-30-1862 TCGA-36-1574 
       51.22        29.00        47.18        85.68         6.08        22.55 
TCGA-36-2542 TCGA-42-2582 TCGA-42-2591 TCGA-61-2008 
       21.60        14.30         7.63        30.61 

$`9Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81        49.15        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       65.46        49.28        32.52        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       82.36        56.55        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       35.41        35.80        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       44.55         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       61.81        67.99        69.01        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       37.08        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
        6.05         5.92         6.84         4.70         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       22.39        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
        4.24        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       16.57         4.21         4.41         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        3.88         3.09        14.24        12.23         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       27.48        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        3.22        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 
       24.95       115.89        87.48        91.66        77.00         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
       41.56        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        6.02         5.95         5.36         4.80        17.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       19.17        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       58.09        88.50        70.62        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       45.50        47.70        25.87        10.26        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       88.34        48.33        38.24         3.48         3.72         3.81 
TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        4.37         5.75         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       64.01        44.48        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
       47.54        31.63        44.58         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       16.64        33.11        55.86        53.26         1.02        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 
       36.95        33.96         2.99        12.00        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       15.78         0.36        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       60.59        35.54        14.93        24.99        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 
       45.01        19.99        42.02         2.96        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       78.87        44.71       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
       31.17        68.28         0.53        16.90        18.64        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1763 
       18.25        41.95        29.23        34.62        17.00        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       17.29        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       45.11         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
       38.07        51.91        36.26         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       48.07        44.91        34.78        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       29.06        21.53        22.85         8.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       27.85        24.23        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2543 TCGA-36-2544 
       29.79        25.91        25.08        23.80         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2588 
       18.31        20.52        14.17        16.14        11.47         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.56         7.46        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       37.02        42.48        48.92        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
        3.98        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       60.62        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       44.52       125.72        22.22        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.53              0.26 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
            85.68            180.16 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           28.340            28.405 
[1] "0.5 - 85.7 (28.3)"  "0.3 - 180.2 (28.4)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D18V2, continuous
D18V3, multiclass
                    clus
vv                   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           28               520
  PERITONEUM (OVARY)               0                 2
D18V4, continuous
[1] "Remove cluster labels:" "9Q GAIN MUTATED"       
clus
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                2                74 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1351        TCGA-04-1356 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-04-1367        TCGA-10-0925        TCGA-10-0926        TCGA-13-0714 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0720        TCGA-13-0724        TCGA-13-0755        TCGA-13-0757 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0758        TCGA-13-0760        TCGA-13-0762        TCGA-13-0764 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0768        TCGA-13-0791        TCGA-13-0792        TCGA-13-0793 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0794        TCGA-13-0795        TCGA-13-0797        TCGA-13-0799 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0801        TCGA-13-0802        TCGA-13-0885        TCGA-13-0887 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0888        TCGA-13-0889        TCGA-13-0891        TCGA-13-0897 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0910        TCGA-13-0912 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-0913        TCGA-13-0919        TCGA-13-1404        TCGA-13-1405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1409        TCGA-13-1410        TCGA-13-1412        TCGA-13-1482 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1483        TCGA-13-1484        TCGA-13-1485        TCGA-13-1489 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1491        TCGA-13-1492        TCGA-13-1495        TCGA-13-1497 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1498        TCGA-13-1499        TCGA-13-1500        TCGA-13-1501 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1504        TCGA-13-1506        TCGA-13-1507        TCGA-13-1509 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-1511        TCGA-13-1512        TCGA-13-2057        TCGA-13-2059 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-13-2060        TCGA-13-2061        TCGA-13-2071        TCGA-24-1614 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-24-1930        TCGA-61-2101 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
D18V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      0   28
  9Q GAIN WILD-TYPE    3  521
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                0                 3
  YES              28               521
D18V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     23    5
  9Q GAIN WILD-TYPE  425   99
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO               23               425
  YES               5                99

Clustering(19) Variable = 10p gain mutation analysis
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    68  83
  10P GAIN WILD-TYPE 193 202
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               151                395 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                83                202 
$`10P GAIN MUTATED`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
       40.24        41.00        46.62        11.87        65.49        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1542 TCGA-04-1652 TCGA-04-1654 
       21.57        63.98        49.28        84.20        31.86        47.70 
TCGA-04-1655 TCGA-09-0365 TCGA-09-0367 TCGA-09-1661 TCGA-09-1667 TCGA-09-1672 
       45.34         9.47        17.95        38.43        61.87         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-2044 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        3.02         8.55         6.12       112.37        71.11        63.09 
TCGA-10-0933 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 TCGA-13-0760 
       11.70        15.19        17.79        55.17        11.18        11.54 
TCGA-13-0802 TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0888 TCGA-13-0890 
        8.19        13.61       107.18        91.40        70.39        67.99 
TCGA-13-0911 TCGA-13-1407 TCGA-13-1409 TCGA-13-1410 TCGA-13-1412 TCGA-13-1477 
       27.68         6.05         6.84         4.70         5.33        54.61 
TCGA-13-1484 TCGA-13-1488 TCGA-13-1492 TCGA-13-1497 TCGA-13-1499 TCGA-13-1512 
       98.04        70.82        73.55        54.31        38.37         3.09 
TCGA-13-2060 TCGA-13-2061 TCGA-20-0987 TCGA-20-1683 TCGA-20-1685 TCGA-23-1021 
        8.58        10.78        23.05        25.38        16.67        47.54 
TCGA-23-1022 TCGA-23-1024 TCGA-23-1031 TCGA-23-1110 TCGA-23-1116 TCGA-23-1118 
       42.51        15.39        18.87        54.51         4.57        86.01 
TCGA-23-1123 TCGA-23-1124 TCGA-23-2079 TCGA-23-2084 TCGA-23-2643 TCGA-24-1417 
       33.47        58.13        91.66        49.84         4.70         7.82 
TCGA-24-1418 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 TCGA-24-1436 TCGA-24-1466 
        7.99         6.02         4.80        17.36         8.55        45.14 
TCGA-24-1469 TCGA-24-1548 TCGA-24-1557 TCGA-24-1564 TCGA-24-1565 TCGA-24-1616 
        9.11        16.21        39.88        25.87        10.26        38.24 
TCGA-24-1843 TCGA-24-1850 TCGA-24-1924 TCGA-24-1928 TCGA-24-2260 TCGA-24-2288 
        3.48         5.49        30.21        11.05        36.16         0.82 
TCGA-24-2295 TCGA-25-1312 TCGA-25-1317 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
       33.11         1.02         1.02        36.95        33.96         2.99 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 TCGA-25-1634 
        2.96        18.58         0.36        20.58         0.30        35.54 
TCGA-25-1635 TCGA-25-1877 TCGA-25-2398 TCGA-29-1691 TCGA-29-1693 TCGA-29-1695 
       51.22        18.05        45.01        47.18       101.75         0.79 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1766 TCGA-29-1775 TCGA-29-1777 
       16.90        18.64        59.67        39.09        12.36        12.30 
TCGA-29-1778 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2432 
       14.93        34.62        86.17        65.00        45.11        11.84 
TCGA-30-1718 TCGA-30-1856 TCGA-30-1861 TCGA-30-1887 TCGA-31-1950 TCGA-31-1953 
       51.91        15.68        34.78        24.26        18.77         6.71 
TCGA-36-1571 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2543 
       22.85        27.85        24.23        24.69        35.05         2.24 
TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2588 TCGA-57-1582 TCGA-57-1583 
       14.17        16.14        11.47         9.44        24.03        11.38 
TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2352 TCGA-59-2372 
       22.32        25.05        25.02       180.16         9.40        44.78 
TCGA-61-1730 TCGA-61-1741 TCGA-61-1907 TCGA-61-1911 TCGA-61-1917 TCGA-61-1918 
        4.34        33.67        31.30        42.48        43.43        15.75 
TCGA-61-1919 TCGA-61-2003 TCGA-61-2012 TCGA-61-2018 TCGA-61-2098 TCGA-61-2101 
       38.17         3.98        30.64        45.40        65.49        55.50 
TCGA-61-2612 
        6.35 

$`10P GAIN WILD-TYPE`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1348 TCGA-04-1351 
        1.81        49.15         2.01        18.51        48.76        65.46 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       32.52        44.32        33.67        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       55.40        48.89        27.88        28.64        64.64        36.23 
TCGA-09-0364 TCGA-09-0366 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 
       29.16        57.73        35.54         9.96        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1675 
       41.59        57.57        55.36        30.48        17.98        97.55 
TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
        6.15        35.15         4.50        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       32.28         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0755 TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       31.07         2.47        11.38        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 
       19.56         8.71         7.79         8.12         8.28        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 
       35.28        35.28        68.91        74.27        66.64        61.81 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       69.01        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 
        6.41         6.08        10.88         6.61         7.36         5.92 
TCGA-13-1411 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 
        4.21        87.06        61.71        29.39        20.68        22.39 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 
       82.88        52.44        38.17        49.22         4.24        37.61 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 TCGA-13-2059 TCGA-13-2065 
        4.14         2.56         3.88        14.24        12.23         8.75 
TCGA-13-2071 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 
        6.28        25.94        26.20        72.20        27.48        19.07 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
        2.93         2.66        40.54        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 
        8.81        29.10         2.24        51.35         3.22        31.20 
TCGA-23-1114 TCGA-23-1117 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 
       68.68        33.30       129.96         4.27         6.38        39.09 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2641 
        0.53        24.95       115.89        87.48        77.00         2.76 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 
        6.38         7.86         0.76         6.25         5.95         5.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 
       28.34        19.17        18.67        43.53        72.92        12.46 
TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
      105.99         3.42         1.18        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       64.27        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       88.50        70.62        19.53        44.09        45.50        47.70 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1842 TCGA-24-1844 
       17.23        90.15        88.34        48.33         8.32         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 
        3.81         4.37        11.28         5.75         9.80        22.65 
TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       16.41        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       64.01        44.48        57.07         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       31.63        70.45        44.58        67.36        36.23        16.64 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       55.86        53.26        26.93        31.99        51.06        37.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1323 TCGA-25-1625 TCGA-25-1626 TCGA-25-1630 
       34.98        65.00        12.00        18.02        15.78         7.86 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 
       56.94        60.59        14.93        24.99        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 
       49.05         1.02        38.04         3.02        12.00        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       44.71        38.53        33.70        31.17        68.28         0.53 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       18.25        41.95        29.23        34.62        17.00        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       66.77        62.93        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1776 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-2427 
       17.29        11.84         8.35         7.20         5.36        62.47 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 
        4.87        42.25        11.47         9.76        38.07        36.26 
TCGA-30-1855 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 
        2.47         0.26        48.07        44.91         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        1.18        57.57        30.05        48.79        45.57        30.18 
TCGA-31-1951 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
       22.45        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-2530 
       21.53        22.55         8.55        30.05        25.74        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-42-2582 TCGA-42-2589 TCGA-42-2590 
       20.98        18.31        20.52        14.30         7.56         7.46 
TCGA-42-2591 TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-59-2349 TCGA-59-2350 
        7.63        21.14         1.74        28.96        80.12        22.32 
TCGA-59-2351 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 
      116.12        34.39         2.14         5.39        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 
       20.94        31.40        18.54        27.88        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1895 
       48.79        44.84        35.80         2.43        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1995 TCGA-61-1998 
       37.02        48.92        56.58        67.73         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 
       14.50        17.98        30.61        39.85         1.18        45.96 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       60.62         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88        31.07         8.58 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.30               0.26 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            180.16             151.99 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             24.26              29.06 
[1] "0.3 - 180.2 (24.3)" "0.3 - 152.0 (29.1)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D19V2, continuous
D19V3, multiclass
                    clus
vv                   10P GAIN MUTATED 10P GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           152                396
  PERITONEUM (OVARY)                2                  0
D19V4, continuous
D19V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      1  153
  10P GAIN WILD-TYPE    2  396
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 1                  2
  YES              153                396
D19V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED    120   34
  10P GAIN WILD-TYPE  328   70
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO               120                328
  YES               34                 70

Clustering(20) Variable = 10q gain mutation analysis
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED    31  42
  10Q GAIN WILD-TYPE 230 243
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                73                473 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                42                243 
$`10Q GAIN MUTATED`
TCGA-04-1332 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1542 TCGA-04-1652 
       41.00        21.57        63.98        49.28        84.20        31.86 
TCGA-04-1655 TCGA-09-0365 TCGA-09-1661 TCGA-09-1672 TCGA-09-1674 TCGA-09-2055 
       45.34         9.47        38.43         5.85         8.55        26.93 
TCGA-10-0928 TCGA-13-0727 TCGA-13-0730 TCGA-13-0802 TCGA-13-0884 TCGA-13-0901 
       18.48        15.19        17.79         8.19       107.18        19.36 
TCGA-13-1410 TCGA-13-1477 TCGA-13-1484 TCGA-13-2061 TCGA-20-0990 TCGA-20-1685 
        4.70        54.61        98.04        10.78        25.94        16.67 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1031 TCGA-23-1110 TCGA-23-1124 TCGA-23-2079 
       47.54        42.51        18.87        54.51        58.13        91.66 
TCGA-23-2084 TCGA-23-2643 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 TCGA-24-1548 
       49.84         4.70         6.02         4.80        17.36        16.21 
TCGA-24-1553 TCGA-24-1564 TCGA-24-1616 TCGA-24-1930 TCGA-25-1312 TCGA-25-1317 
       58.09        25.87        38.24        81.11         1.02         1.02 
TCGA-25-1321 TCGA-25-1323 TCGA-25-1623 TCGA-25-1634 TCGA-25-1877 TCGA-25-2398 
       33.96        12.00        18.58        35.54        18.05        45.01 
TCGA-25-2404 TCGA-29-1702 TCGA-29-2425 TCGA-29-2428 TCGA-29-2432 TCGA-31-1950 
       29.00        18.64        65.00        45.11        11.84        18.77 
TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 TCGA-36-2548 TCGA-36-2552 TCGA-57-1582 
       27.85        24.69        35.05        14.17        11.47        24.03 
TCGA-57-1583 TCGA-57-1994 TCGA-59-2352 TCGA-61-1730 TCGA-61-1907 TCGA-61-1911 
       11.38        25.02         9.40         4.34        31.30        42.48 
TCGA-61-1915 TCGA-61-1919 TCGA-61-2002 TCGA-61-2003 TCGA-61-2098 TCGA-61-2101 
       67.73        38.17        17.98         3.98        65.49        55.50 
TCGA-61-2612 
        6.35 

$`10Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24         1.81        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1351 TCGA-04-1361 
       11.87        65.49        63.06        48.76        65.46        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       44.32        33.67        76.54        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 
       41.59        19.99        38.37       119.08        29.06        55.40 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 
       48.89        27.88        28.64        64.64        36.23        47.70 
TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 
       29.16        57.73        17.95        35.54         9.96        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
       17.98         3.02        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        4.50       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 
       12.46        54.31        25.91        81.47        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       31.07        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.12         8.28        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
       68.91        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       27.68        34.06        29.98        21.14        14.89        13.81 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 
        6.05         5.92         6.84         4.21         5.33        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       61.71        29.39        20.68        22.39        70.82        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       52.44        73.55        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       14.24        12.23         8.58         8.75         6.28        23.05 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 
       26.20        72.20        27.48        25.38        19.07         2.93 
TCGA-20-1687 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
        2.66        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 
        8.81        29.10         2.24        51.35         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 
        6.38        39.09        33.47         0.53        24.95       115.89 
TCGA-23-2078 TCGA-23-2081 TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       87.48        77.00         2.76         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1430 
        7.86         0.76         6.25         5.95         5.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       19.17        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       26.96        57.37        64.27        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       41.39        88.50        70.62        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       45.50        47.70        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       48.33         8.32         3.48         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
       11.28         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       16.41        11.05         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       64.01        44.48        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 
       36.23        16.64        33.11        55.86        53.26        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
       31.99        51.06        37.02        34.98        65.00        36.95 
TCGA-25-1322 TCGA-25-1329 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.99         2.96        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 
        7.86         0.30        56.94        60.59        51.22        14.93 
TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       24.99        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 
        3.02        12.00        19.99        42.02         2.96        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       26.96        78.87        44.71        47.18       101.75        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
        0.79        33.70        31.17        68.28         0.53        16.90 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       24.36        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
       62.47         4.87        42.25        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       51.91        36.26         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       44.91        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 
       24.26        30.05        48.79        45.57        30.18        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       24.23        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2551 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       16.14        14.30         9.44         7.56         7.46         7.63 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-59-2348 
       21.14         1.74        22.32        28.96        25.05       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       80.12        22.32       116.12        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       27.88        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1913 
       11.41        13.02         9.07        34.13        37.02        48.92 
TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       56.58        43.43        15.75         1.97         5.52        14.50 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       30.61        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       60.62         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88        31.07         8.58 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              1.02               0.26 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            107.18             180.16 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             25.02              28.96 
[1] "1.0 - 107.2 (25.0)" "0.3 - 180.2 (29.0)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D20V2, continuous
D20V3, multiclass
                    clus
vv                   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            73                475
  PERITONEUM (OVARY)                1                  1
D20V4, continuous
D20V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      0   74
  10Q GAIN WILD-TYPE    3  475
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 0                  3
  YES               74                475
D20V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED     56   18
  10Q GAIN WILD-TYPE  392   86
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                56                392
  YES               18                 86

Clustering(21) Variable = 11p gain mutation analysis
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    29  20
  11P GAIN WILD-TYPE 232 265
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                49                497 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                20                265 
$`11P GAIN MUTATED`
TCGA-04-1346 TCGA-04-1350 TCGA-04-1362 TCGA-04-1371 TCGA-04-1652 TCGA-09-2043 
       65.49        63.98        44.32        82.36        31.86         6.15 
TCGA-10-0931 TCGA-13-0724 TCGA-13-0727 TCGA-13-0791 TCGA-13-0795 TCGA-13-0797 
       32.28         2.73        15.19        38.93        19.56         8.71 
TCGA-13-0888 TCGA-13-1407 TCGA-13-1410 TCGA-13-1412 TCGA-13-1489 TCGA-13-1499 
       70.39         6.05         4.70         5.33        82.88        38.37 
TCGA-13-2057 TCGA-23-1021 TCGA-23-1024 TCGA-23-1026 TCGA-23-1029 TCGA-23-1030 
       14.24        47.54        15.39        26.83         8.81        29.10 
TCGA-23-1109 TCGA-23-1111 TCGA-23-1121 TCGA-23-2084 TCGA-23-2645 TCGA-24-1104 
       51.35         3.22         6.38        49.84         4.50        63.55 
TCGA-24-1556 TCGA-24-1563 TCGA-24-1842 TCGA-24-1928 TCGA-24-2030 TCGA-25-1312 
       70.62        47.70         8.32        11.05        53.95         1.02 
TCGA-25-1321 TCGA-25-1877 TCGA-29-1691 TCGA-29-1763 TCGA-29-1775 TCGA-30-1857 
       33.96        18.05        47.18        66.77        12.36         0.26 
TCGA-30-1859 TCGA-36-1578 TCGA-59-2348 TCGA-61-1907 TCGA-61-1915 TCGA-61-2008 
       48.07        27.85       180.16        31.30        67.73        30.61 
TCGA-61-2097 
       60.62 

$`11P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 
       18.51        11.87        63.06        48.76        21.57        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 
       49.28        32.52        33.67        76.54        71.47        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 
       41.59        19.99        38.37       119.08        29.06        84.20 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       55.40        48.89        27.88        28.64        64.64        36.23 
TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 
       47.70        45.34        29.16         9.47        57.73        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       35.54         9.96        38.43        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 
       57.57        61.87        55.36        30.48        17.98         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        3.02         8.55        97.55         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
      112.37        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 
        6.21        24.59        44.55        39.58        12.39        31.07 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       17.79        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0792 
       34.06        32.25        31.04        21.40         8.42        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       28.70        30.35         7.79         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       91.40        74.27        66.64        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 
        6.41         6.08        10.88         6.61         7.36         5.92 
TCGA-13-1409 TCGA-13-1411 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        6.84         4.21        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       98.04        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 
       38.17        49.22         4.24        54.31        37.61        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        2.56         3.88         3.09        12.23         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1027 TCGA-23-1028 TCGA-23-1031 TCGA-23-1032 
       42.51        40.54        31.73        49.41        18.87         2.24 
TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       54.51        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 
      129.96         4.27        39.09        33.47        58.13         0.53 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 
       24.95       115.89        87.48        91.66        77.00         2.76 
TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.70         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
        7.66        22.32        54.08        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       18.67        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       41.39        58.09        88.50        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       45.50        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       48.33        38.24         3.48         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
       11.28         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       16.41        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
       34.82       109.68        14.43        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       44.48        57.07        36.16         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
       31.63        70.45        44.58         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 
       16.64        33.11        55.86        53.26        26.93        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
       51.06        37.02         1.02        34.98        65.00        36.95 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 
       35.54        51.22        14.93        24.99        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       78.87        44.71       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
       31.17        68.28         0.53        16.90        18.64        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       18.25        41.95        29.23        34.62        17.00        85.68 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       17.29        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        5.36        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
        4.87        42.25        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1860 TCGA-30-1861 
       51.91        36.26         2.47        15.68        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 
       22.85        22.55         8.55        30.05        25.74        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 
       20.52        14.17        16.14        11.47        14.30         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.56         7.46         7.63        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 
        1.74        22.32        28.96        25.05        25.02        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 
        5.79        11.41        13.02         9.07        34.13        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       42.48        48.92        56.58        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 
        1.97         5.52        14.50        17.98         3.98        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 
       51.72        71.74        61.64        58.39        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       51.91        15.88         6.35        31.07         8.58 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.26               0.30 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            180.16             151.99 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             31.30              27.88 
[1] "0.3 - 180.2 (31.3)" "0.3 - 152.0 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D21V2, continuous
D21V3, multiclass
                    clus
vv                   11P GAIN MUTATED 11P GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            49                499
  PERITONEUM (OVARY)                0                  2
D21V4, continuous
D21V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      0   49
  11P GAIN WILD-TYPE    3  500
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 0                  3
  YES               49                500
D21V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     35   14
  11P GAIN WILD-TYPE  413   90
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                35                413
  YES               14                 90

Clustering(22) Variable = 11q gain mutation analysis
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    48  42
  11Q GAIN WILD-TYPE 213 243
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                90                456 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                42                243 
$`11Q GAIN MUTATED`
TCGA-04-1332 TCGA-04-1343 TCGA-04-1346 TCGA-04-1350 TCGA-04-1361 TCGA-04-1516 
       41.00        11.87        65.49        63.98        32.52        41.59 
TCGA-04-1646 TCGA-04-1652 TCGA-09-1661 TCGA-09-1668 TCGA-09-2048 TCGA-09-2055 
       27.88        31.86        38.43        55.36         4.50        26.93 
TCGA-13-0714 TCGA-13-0726 TCGA-13-0764 TCGA-13-0791 TCGA-13-0793 TCGA-13-0797 
        6.21        31.07        31.04        38.93        28.70         8.71 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0904 TCGA-13-0908 TCGA-13-1403 
       43.36        57.47        56.15        48.33        44.84        10.88 
TCGA-13-1407 TCGA-13-1410 TCGA-13-1412 TCGA-13-1489 TCGA-13-1499 TCGA-13-1501 
        6.05         4.70         5.33        82.88        38.37        32.84 
TCGA-13-1506 TCGA-13-2057 TCGA-13-2065 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
        4.41        14.24         8.75         2.66        47.54        42.51 
TCGA-23-1024 TCGA-23-1027 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1109 
       15.39        31.73         8.81        29.10        18.87        51.35 
TCGA-23-1111 TCGA-23-1124 TCGA-23-2084 TCGA-23-2645 TCGA-24-1103 TCGA-24-1104 
        3.22        58.13        49.84         4.50        54.08        63.55 
TCGA-24-1428 TCGA-24-1431 TCGA-24-1551 TCGA-24-1556 TCGA-24-1558 TCGA-24-1563 
       17.36        19.17        51.91        70.62        19.53        47.70 
TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
       88.34        38.24         8.32         3.81         4.37        11.28 
TCGA-24-1928 TCGA-24-2026 TCGA-24-2027 TCGA-24-2033 TCGA-24-2035 TCGA-25-1312 
       11.05        34.82       109.68        18.48        28.18         1.02 
TCGA-25-1314 TCGA-25-1877 TCGA-29-1701 TCGA-29-1702 TCGA-29-1763 TCGA-29-1776 
       31.99        18.05        16.90        18.64        66.77        11.84 
TCGA-29-1783 TCGA-29-2425 TCGA-29-2429 TCGA-30-1856 TCGA-30-1857 TCGA-30-1862 
        7.20        65.00         4.87        15.68         0.26         6.08 
TCGA-36-1570 TCGA-36-1574 TCGA-36-1578 TCGA-36-2530 TCGA-57-1584 TCGA-59-2348 
       21.53        22.55        27.85        33.01        21.14       180.16 
TCGA-61-1895 TCGA-61-1907 TCGA-61-1915 TCGA-61-1918 TCGA-61-2097 TCGA-61-2109 
        1.41        31.30        67.73        15.75        60.62        20.68 

$`11Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24         1.81        49.15         2.01        46.62        18.51 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 
       63.06        48.76        21.57        65.46        49.28        44.32 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 
       33.67        76.54        71.47        82.36        56.55        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       38.37       119.08        29.06        84.20        55.40        48.89 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       28.64        64.64        36.23        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 
        9.47        57.73        17.95        35.54         9.96        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 
       74.89        41.59        57.57        61.87        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
       35.15       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
       19.86        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 TCGA-13-0792 
       11.54        34.06        32.25        21.40         8.42        36.72 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       30.35        19.56         7.79         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 
       69.01        57.07        19.36        47.38        47.84        44.94 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1404 TCGA-13-1405 
       13.81         4.64         6.41         6.08         6.61         7.36 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1411 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        5.92         6.84         4.21        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 
       29.39        98.04        20.68        22.39        70.82        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1500 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       13.97        16.57         4.21         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2071 
        3.88         3.09        12.23         8.58        10.78         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1023 TCGA-23-1026 TCGA-23-1028 
       19.07        16.67         2.93        40.54        26.83        49.41 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
        2.24        54.51        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2641 TCGA-23-2643 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        2.76         4.70         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       41.56         7.66        22.32        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 
        5.95         5.36         4.80        28.34        18.67        43.53 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
        8.55        72.92        12.46        45.14       105.99         9.11 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        3.42         1.18        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 
       16.21        56.58        41.06        41.39        58.09        88.50 
TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       39.88        44.09        45.50        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1614 TCGA-24-1843 TCGA-24-1844 TCGA-24-1849 TCGA-24-1850 
       90.15        48.33         3.48         3.72         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 
        9.80        22.65        30.21        16.41        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2029 TCGA-24-2030 TCGA-24-2036 
      151.99        44.84        58.16        14.43        53.95        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       44.48        57.07        36.16         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
       31.63        70.45        44.58         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1315 
       16.64        33.11        55.86        53.26        26.93        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 
       35.54        51.22        14.93        24.99        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1703 TCGA-29-1705 
       33.70        31.17        68.28         0.53        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 
       41.95        29.23        34.62        17.00        85.68        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 
       12.36        12.30        14.93         8.35         5.36        34.62 
TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       86.17        62.47        45.11        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1859 
        9.76        38.07        51.91        36.26         2.47        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       44.91        34.78        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 
       22.85         8.55        30.05        25.74        24.23        24.69 
TCGA-36-2529 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       35.05        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       16.14        11.47        14.30         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
        7.63        24.03        11.38         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.05        25.02        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
       20.94        31.40        18.54        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
       43.69         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 
       34.13        37.02        42.48        48.92        56.58        43.43 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       30.61        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 TCGA-61-2111 
       65.49        55.50         6.48        76.83        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88         6.35        31.07         8.58 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.26               0.30 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            180.16             151.99 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            28.030             28.555 
[1] "0.3 - 180.2 (28.0)" "0.3 - 152.0 (28.6)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D22V2, continuous
D22V3, multiclass
                    clus
vv                   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            91                457
  PERITONEUM (OVARY)                0                  2
D22V4, continuous
D22V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      0   91
  11Q GAIN WILD-TYPE    3  458
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 0                  3
  YES               91                458
D22V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     72   19
  11Q GAIN WILD-TYPE  376   85
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                72                376
  YES               19                 85

Clustering(23) Variable = 12p gain mutation analysis
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED   101 109
  12P GAIN WILD-TYPE 160 176
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               210                336 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               109                176 
$`12P GAIN MUTATED`
TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 
       18.51        65.49        63.06        65.46        49.28        44.32 
TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 TCGA-04-1542 
       82.36        41.59        19.99        38.37        29.06        84.20 
TCGA-04-1646 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       27.88        31.86        45.34        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1668 TCGA-09-1672 
       17.95        35.54         9.96        38.43        55.36         5.85 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2044 TCGA-09-2049 TCGA-09-2051 TCGA-10-0926 
        8.55         6.15         6.12       112.37        63.09        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-13-0717 
       81.47        18.48        33.24        32.28        11.70        24.59 
TCGA-13-0723 TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 TCGA-13-0760 TCGA-13-0762 
       39.58        15.19        17.79        11.18        11.54        32.25 
TCGA-13-0764 TCGA-13-0792 TCGA-13-0795 TCGA-13-0800 TCGA-13-0802 TCGA-13-0883 
       31.04        36.72        19.56         8.12         8.19        68.91 
TCGA-13-0888 TCGA-13-0899 TCGA-13-0901 TCGA-13-0906 TCGA-13-0912 TCGA-13-0921 
       70.39        56.15        19.36        44.94        34.06         4.64 
TCGA-13-0923 TCGA-13-1407 TCGA-13-1411 TCGA-13-1485 TCGA-13-1495 TCGA-13-1496 
        6.41         6.05         4.21        20.68        49.22         4.24 
TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1512 TCGA-13-2057 
       38.37        32.84        16.57         4.41         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2071 TCGA-20-1682 TCGA-20-1685 TCGA-20-1686 
       12.23         8.58         6.28        27.48        16.67         2.93 
TCGA-23-1021 TCGA-23-1024 TCGA-23-1027 TCGA-23-1032 TCGA-23-1111 TCGA-23-1114 
       47.54        15.39        31.73         2.24         3.22        68.68 
TCGA-23-1116 TCGA-23-1118 TCGA-23-1124 TCGA-23-1809 TCGA-23-2079 TCGA-23-2643 
        4.57        86.01        58.13         0.53        91.66         4.70 
TCGA-23-2645 TCGA-24-1418 TCGA-24-1419 TCGA-24-1424 TCGA-24-1427 TCGA-24-1430 
        4.50         7.99         7.86         6.02         4.80        28.34 
TCGA-24-1436 TCGA-24-1466 TCGA-24-1469 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
        8.55        45.14         9.11        22.19        26.96        57.37 
TCGA-24-1548 TCGA-24-1553 TCGA-24-1558 TCGA-24-1560 TCGA-24-1563 TCGA-24-1564 
       16.21        58.09        19.53        44.09        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1845 
       10.26        17.23        88.34        48.33        38.24         3.81 
TCGA-24-1847 TCGA-24-1850 TCGA-24-1920 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       11.28         5.49         9.80        81.11         4.87       151.99 
TCGA-24-2033 TCGA-24-2038 TCGA-24-2260 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       18.48        44.48        36.16        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-25-1312 TCGA-25-1315 TCGA-25-1321 
       36.23        16.64        33.11         1.02        51.06        33.96 
TCGA-25-1323 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 TCGA-25-1634 TCGA-25-1635 
       12.00        15.78         0.36         7.86        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2392 
       14.93        24.99        18.05        85.05        13.02         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2398 TCGA-25-2400 TCGA-29-1690 TCGA-29-1695 
       38.04         3.02        45.01        42.02        44.71         0.79 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 
       68.28         0.53        29.23        17.00        66.77        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 
       31.23        22.98        17.29        12.36        12.30        14.93 
TCGA-29-1783 TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2431 TCGA-30-1856 
        7.20        86.17        65.00        45.11        42.25        15.68 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1867 TCGA-30-1887 TCGA-30-1891 TCGA-31-1955 
       48.07        44.91         1.18        24.26        30.05        42.51 
TCGA-31-1959 TCGA-36-1569 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
        2.17        29.06        22.85         8.55        30.05        25.74 
TCGA-36-1580 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-57-1583 
       24.23        20.52        14.17        16.14        11.47        11.38 
TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2351 TCGA-59-2352 
       22.32        25.05        25.02       180.16       116.12         9.40 
TCGA-59-2354 TCGA-59-2363 TCGA-59-2372 TCGA-61-1722 TCGA-61-1728 TCGA-61-1730 
       34.39         5.39        44.78         8.05        27.88         4.34 
TCGA-61-1733 TCGA-61-1895 TCGA-61-1900 TCGA-61-1904 TCGA-61-1907 TCGA-61-1915 
       31.76         1.41         5.79         9.07        31.30        67.73 
TCGA-61-1917 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2018 
       43.43        17.98        30.61        39.85        30.64        45.40 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 TCGA-61-2110 TCGA-61-2612 TCGA-61-2614 
       60.62        65.49         6.48        44.52         6.35         8.58 

$`12P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 TCGA-04-1364 
       11.87        48.76        21.57        63.98        32.52        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1530 TCGA-04-1638 TCGA-04-1644 
       76.54        71.47        56.55       119.08        55.40        48.89 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-09-1662 TCGA-09-1664 
       28.64        64.64        36.23        47.70        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 
       41.59        57.57        61.87        30.48        17.98         3.02 
TCGA-09-1675 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 
       97.55        35.15         4.50        71.11        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       26.93        12.46        54.31         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 
       15.12        19.86         6.21        44.55         2.73        12.39 
TCGA-13-0726 TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 TCGA-13-0761 TCGA-13-0766 
       31.07        55.17         2.47        11.38        34.06        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
        8.42        38.93        28.70        30.35         8.71         7.79 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 
        8.28        43.82        35.28        35.28        13.61       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       91.40        74.27        66.64        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       43.36        57.47        57.07        47.38        48.33        47.84 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       44.84        37.08        27.68        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 
       13.81         6.08        10.88         6.61         7.36         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        6.84         4.70         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       29.39        98.04        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1505 
       73.55        38.17        54.31        37.61        13.97         4.21 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2061 TCGA-13-2065 
        4.77         4.14         2.56         3.88        10.78         8.75 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 
       23.05        25.94        26.20        72.20        25.38        19.07 
TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1028 TCGA-23-1029 
        2.66        42.51        40.54        26.83        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1117 
       29.10        18.87        51.35        54.51        31.20        33.30 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 
      129.96         4.27         6.38        39.09        33.47        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-24-0966 
      115.89        87.48        77.00        49.84         2.76         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
       19.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       54.08        63.55        47.41         6.31         6.38         7.82 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1428 TCGA-24-1431 
        0.76         6.25         5.95         5.36        17.36        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1470 
       18.67        43.53        72.92        12.46       105.99         3.42 
TCGA-24-1471 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
        1.18        64.27        56.58        41.06        51.91        41.39 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1562 TCGA-24-1603 TCGA-24-1842 
       88.50        70.62        39.88        45.50        90.15         8.32 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1849 TCGA-24-1923 TCGA-24-1924 
        3.48         3.72         4.37         5.75        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
       16.41        11.05        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2261 
       14.43        53.95        28.18        64.01        57.07         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2297 TCGA-24-2298 
        0.36        47.54        31.63        70.45        55.86        53.26 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       26.93        31.99        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1628 
       36.95         2.99         2.96        18.58        18.02        20.58 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-2391 TCGA-25-2397 TCGA-25-2399 
        0.30        56.94        60.59        49.05        12.00        19.99 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1691 
        2.96        29.00        30.97        26.96        78.87        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1701 TCGA-29-1702 
      101.75        38.53        33.70        31.17        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 
       59.67        18.25        41.95        34.62        85.68        62.93 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1776 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 
       24.36        22.52        11.84         8.35         5.36        34.62 
TCGA-29-2427 TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
       62.47         4.87        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1861 TCGA-30-1862 
       51.91        36.26         2.47         0.26        34.78         6.08 
TCGA-30-1866 TCGA-30-1880 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       36.62        57.57        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1956 TCGA-36-1568 TCGA-36-1570 TCGA-36-1574 
       22.45         6.71        44.09        28.73        21.53        22.55 
TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       27.85        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       18.31        14.30         9.44         7.56         7.46         7.63 
TCGA-57-1582 TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-59-2349 TCGA-59-2350 
       24.03        21.14         1.74        28.96        80.12        22.32 
TCGA-59-2355 TCGA-61-1721 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1734 
        2.14        11.11        20.94        31.40        18.54        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 
        8.42        11.41        13.02        34.13        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       48.92        56.58        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2003 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 TCGA-61-2088 
       14.50         3.98         1.18        45.96         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2101 TCGA-61-2104 
       51.72        71.74        61.64        58.39        55.50        76.83 
TCGA-61-2109 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 
       20.68       125.72        22.22        51.91        15.88        31.07 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.36               0.26 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            180.16             129.96 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            25.005             29.885 
[1] "0.4 - 180.2 (25.0)" "0.3 - 130.0 (29.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
[1] "hr=" "1.1"
D23V2, continuous
D23V3, multiclass
                    clus
vv                   12P GAIN MUTATED 12P GAIN WILD-TYPE
  OMENTUM                           2                  0
  OVARY                           210                338
  PERITONEUM (OVARY)                1                  1
D23V4, continuous
D23V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      2  211
  12P GAIN WILD-TYPE    1  338
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 2                  1
  YES              211                338
D23V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED    167   46
  12P GAIN WILD-TYPE  281   58
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO               167                281
  YES               46                 58

Clustering(24) Variable = 12q gain mutation analysis
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    53  66
  12Q GAIN WILD-TYPE 208 219
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               119                427 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                66                219 
$`12Q GAIN MUTATED`
TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1362 TCGA-04-1525 
        2.01        18.51        65.49        63.06        44.32        38.37 
TCGA-04-1652 TCGA-04-1655 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       31.86        45.34         9.47        57.73        17.95        35.54 
TCGA-09-1672 TCGA-09-1674 TCGA-09-2048 TCGA-09-2049 TCGA-09-2055 TCGA-10-0926 
        5.85         8.55         4.50       112.37        26.93        25.91 
TCGA-10-0927 TCGA-10-0930 TCGA-10-0936 TCGA-13-0717 TCGA-13-0723 TCGA-13-0727 
       81.47        33.24        35.80        24.59        39.58        15.19 
TCGA-13-0795 TCGA-13-0800 TCGA-13-0804 TCGA-13-0888 TCGA-13-0910 TCGA-13-0921 
       19.56         8.12        35.28        70.39        37.08         4.64 
TCGA-13-1407 TCGA-13-1485 TCGA-13-1496 TCGA-13-1506 TCGA-13-1512 TCGA-13-2057 
        6.05        20.68         4.24         4.41         3.09        14.24 
TCGA-13-2060 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 TCGA-23-1032 TCGA-23-1111 
        8.58        16.67         2.93        47.54         2.24         3.22 
TCGA-23-1116 TCGA-23-1124 TCGA-23-1809 TCGA-23-2643 TCGA-23-2645 TCGA-24-1419 
        4.57        58.13         0.53         4.70         4.50         7.86 
TCGA-24-1424 TCGA-24-1427 TCGA-24-1436 TCGA-24-1464 TCGA-24-1469 TCGA-24-1474 
        6.02         4.80         8.55        12.46         9.11        22.19 
TCGA-24-1544 TCGA-24-1548 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       26.96        16.21        19.53        44.09        45.50        47.70 
TCGA-24-1565 TCGA-24-1616 TCGA-24-1845 TCGA-24-1847 TCGA-24-1850 TCGA-24-1930 
       10.26        38.24         3.81        11.28         5.49        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2033 TCGA-24-2038 TCGA-24-2260 TCGA-24-2281 
        4.87       151.99        18.48        44.48        36.16        44.58 
TCGA-24-2288 TCGA-24-2293 TCGA-24-2295 TCGA-25-1312 TCGA-25-1321 TCGA-25-1627 
        0.82        16.64        33.11         1.02        33.96         0.36 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2392 TCGA-25-2398 
       35.54        51.22        14.93        24.99         1.02        45.01 
TCGA-29-1690 TCGA-29-1698 TCGA-29-1766 TCGA-29-1768 TCGA-29-1774 TCGA-29-1778 
       44.71        68.28        39.09        31.23        17.29        14.93 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2431 TCGA-30-1859 TCGA-30-1867 
       86.17        65.00        45.11        42.25        48.07         1.18 
TCGA-31-1959 TCGA-36-1571 TCGA-36-1575 TCGA-36-2548 TCGA-36-2551 TCGA-57-1583 
        2.17        22.85         8.55        14.17        16.14        11.38 
TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2351 TCGA-59-2352 
       22.32        25.05        25.02       180.16       116.12         9.40 
TCGA-59-2372 TCGA-61-1722 TCGA-61-1730 TCGA-61-1915 TCGA-61-2002 TCGA-61-2009 
       44.78         8.05         4.34        67.73        17.98        39.85 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 TCGA-61-2110 TCGA-61-2614 
       60.62        65.49         6.48        44.52         8.58 

$`12Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 
       40.24        41.00         1.81        49.15        46.62        11.87 
TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 
       48.76        21.57        63.98        65.46        49.28        32.52 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       33.67        76.54        71.47        82.36        56.55        41.59 
TCGA-04-1517 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       19.99       119.08        29.06        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-09-0364 
       27.88        28.64        64.64        36.23        47.70        29.16 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 
       61.87        55.36        30.48        17.98         3.02        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
        6.15         6.12        35.15        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2056 TCGA-10-0925 TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 
       20.91        12.46        54.31        18.48        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 
        3.88        35.41        15.12        19.86         6.21        44.55 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
        2.73        12.39        31.07        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       11.18        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 
        8.71         7.79         8.28         8.19        43.82        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 
       61.81        67.99        69.01        43.36        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       57.07        19.36        47.38        48.33        47.84        44.94 
TCGA-13-0908 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       44.84        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
       13.81         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        5.92         6.84         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1487 TCGA-13-1488 
       87.06        61.71        29.39        98.04        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 
       82.88        52.44        73.55        38.17        49.22        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2059 TCGA-13-2061 
        4.77         4.14         2.56         3.88        12.23        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 
       27.48        25.38        19.07         2.66        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       15.39        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 
       18.87        51.35        54.51        31.20        68.68        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
       24.95       115.89        87.48        91.66        77.00        49.84 
TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        2.76         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 
        6.38         7.82         7.99         0.76         6.25         5.95 
TCGA-24-1426 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
        5.36        17.36        28.34        19.17        18.67        43.53 
TCGA-24-1463 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1545 
       72.92        45.14       105.99         3.42         1.18        57.37 
TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       64.27        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1564 TCGA-24-1567 TCGA-24-1603 
       88.50        70.62        39.88        25.87        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 
       88.34        48.33         8.32         3.48         3.72         4.37 
TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 
        5.75         9.80        22.65        30.21        16.41        11.05 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       28.18        64.01        57.07         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2289 TCGA-24-2290 TCGA-24-2297 TCGA-24-2298 
       31.63        70.45        67.36        36.23        55.86        53.26 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       65.00        36.95         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       18.02        15.78        20.58         7.86         0.30        56.94 
TCGA-25-1633 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 
       60.59        18.05        85.05        13.02        49.05        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 
        3.02        12.00        19.99        42.02         2.96        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       30.97        26.96        78.87        47.18       101.75        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
        0.79        33.70        31.17         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       85.68        66.77        62.93        22.98        24.36        22.52 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       12.36        11.84        12.30         8.35         7.20         5.36 
TCGA-29-1785 TCGA-29-2427 TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       34.62        62.47         4.87        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
       38.07        51.91        36.26         2.47        15.68         0.26 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 
       44.91        34.78         6.08        36.62        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
        6.71        42.51        44.09        28.73        29.06        21.53 
TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
       22.55        30.05        25.74        27.85        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       11.47        14.30         9.44         7.56         7.46         7.63 
TCGA-57-1582 TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-59-2349 TCGA-59-2350 
       24.03        21.14         1.74        28.96        80.12        22.32 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1724 TCGA-61-1725 
       34.39         2.14         5.39        11.11        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       18.54        27.88        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 
       37.02        42.48        48.92        56.58        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 
       38.17         1.97         5.52        14.50         3.98        30.61 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2101 TCGA-61-2104 
       51.72        71.74        61.64        58.39        55.50        76.83 
TCGA-61-2109 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       20.68       125.72        22.22        51.91        15.88         6.35 
TCGA-61-2613 
       31.07 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.36               0.26 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            180.16             129.96 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             20.68              29.23 
[1] "0.4 - 180.2 (20.7)" "0.3 - 130.0 (29.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
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        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
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        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
[1] "hr=" "1.2"
D24V2, continuous
D24V3, multiclass
                    clus
vv                   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           119                429
  PERITONEUM (OVARY)                1                  1
D24V4, continuous
D24V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      0  121
  12Q GAIN WILD-TYPE    3  428
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 0                  3
  YES              121                428
D24V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     96   25
  12Q GAIN WILD-TYPE  352   79
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                96                352
  YES               25                 79

Clustering(25) Variable = 13q gain mutation analysis
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED    23  30
  13Q GAIN WILD-TYPE 238 255
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                53                493 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                30                255 
$`13Q GAIN MUTATED`
TCGA-04-1337 TCGA-04-1350 TCGA-04-1351 TCGA-04-1371 TCGA-09-0364 TCGA-09-0365 
        2.01        63.98        65.46        82.36        29.16         9.47 
TCGA-09-2049 TCGA-10-0926 TCGA-10-0933 TCGA-10-0935 TCGA-13-0727 TCGA-13-0791 
      112.37        25.91        11.70        35.41        15.19        38.93 
TCGA-13-0803 TCGA-13-0899 TCGA-13-0906 TCGA-13-0921 TCGA-13-1407 TCGA-13-1412 
       43.82        56.15        44.94         4.64         6.05         5.33 
TCGA-13-1481 TCGA-23-1022 TCGA-23-1109 TCGA-23-2072 TCGA-24-0970 TCGA-24-1418 
       87.06        42.51        51.35        24.95        11.64         7.99 
TCGA-24-1422 TCGA-24-1467 TCGA-24-1930 TCGA-24-2027 TCGA-24-2297 TCGA-25-1312 
        0.76       105.99        81.11       109.68        55.86         1.02 
TCGA-25-1323 TCGA-25-1870 TCGA-25-2042 TCGA-29-1695 TCGA-29-1770 TCGA-29-1783 
       12.00        14.93        13.02         0.79        24.36         7.20 
TCGA-29-2425 TCGA-29-2428 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1862 
       65.00        45.11        38.07        51.91         2.47         6.08 
TCGA-30-1880 TCGA-36-1576 TCGA-36-2552 TCGA-57-1586 TCGA-57-1993 TCGA-61-1899 
       57.57        30.05        11.47        22.32        25.05         8.42 
TCGA-61-1900 TCGA-61-1911 TCGA-61-2009 TCGA-61-2098 TCGA-61-2102 
        5.79        42.48        39.85        65.49         6.48 

$`13Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81        49.15        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1356 
       11.87        65.49        63.06        48.76        21.57        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 
       32.52        44.32        33.67        76.54        71.47        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 
       41.59        19.99        38.37       119.08        29.06        84.20 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       55.40        48.89        27.88        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       31.86        47.70        45.34        57.73        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        8.55        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
       71.11        63.09        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 
       54.31        81.47        18.48        33.24        32.28         3.88 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.80        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 
       39.58         2.73        12.39        31.07        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 
        2.47        11.18        11.38        11.54        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       31.04        21.40         8.42        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       19.56         8.71         7.79         8.12         8.28         8.19 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       35.28        35.28        13.61        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       74.27        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       43.36        57.47        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       47.84        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       21.14        14.89        13.81         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        6.61         7.36         5.92         6.84         4.70         4.21 
TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       54.61        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       70.82        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
        4.24        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       16.57         4.21         4.41         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        3.88         3.09        14.24        12.23         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       47.54        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1110 TCGA-23-1111 
        8.81        29.10        18.87         2.24        54.51         3.22 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       31.20        68.68         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 
        4.27         6.38        39.09        33.47        58.13         0.53 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0975 TCGA-24-0979 
        4.70         4.50         7.63        19.63        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        6.38         7.82         7.86         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 
       43.53         8.55        72.92        12.46        45.14         9.11 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        3.42         1.18        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       16.21        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       48.33        38.24         8.32         3.48         3.72         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       30.21        16.41        11.05         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       58.16        34.82        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       64.01        44.48        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 
       36.23        16.64        33.11        53.26        26.93        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
       51.06        37.02         1.02        34.98        65.00        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       33.96         2.99         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2391 
       35.54        51.22        24.99        18.05        85.05        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       44.71        47.18       101.75        38.53        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       68.28         0.53        16.90        18.64        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 
       62.93        39.09        31.23        22.98        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1784 
       12.36        11.84        12.30        14.93         8.35         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       34.62        86.17        62.47         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       11.47         9.76        36.26        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-30-1891 
       44.91        34.78        36.62         1.18        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.85        22.55         8.55        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
       20.52        14.17        16.14        14.30         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.46         7.63        24.03        11.38        21.14         1.74 
TCGA-57-1992 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       28.96        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
       33.67        43.69         1.41        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       34.13        31.30        37.02        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
       17.98         3.98        30.61        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.40         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2101 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       58.39        60.62        55.50        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
      125.72        22.22        51.91        15.88         6.35        31.07 
TCGA-61-2614 
        8.58 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.76               0.26 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            112.37             180.16 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             25.91              28.47 
[1] "0.8 - 112.4 (25.9)" "0.3 - 180.2 (28.5)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
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        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
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        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
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        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
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        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
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        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
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        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
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        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
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        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
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        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
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        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
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        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
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        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
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        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
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"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
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        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
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        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D25V2, continuous
D25V3, multiclass
                    clus
vv                   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            53                495
  PERITONEUM (OVARY)                0                  2
D25V4, continuous
D25V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      1   52
  13Q GAIN WILD-TYPE    2  497
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 1                  2
  YES               52                497
D25V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED     38   15
  13Q GAIN WILD-TYPE  410   89
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                38                410
  YES               15                 89

Clustering(26) Variable = 14q gain mutation analysis
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    16  15
  14Q GAIN WILD-TYPE 245 270
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                31                515 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                15                270 
$`14Q GAIN MUTATED`
TCGA-04-1350 TCGA-04-1514 TCGA-04-1646 TCGA-09-1669 TCGA-09-1674 TCGA-13-0762 
       63.98        56.55        27.88        30.48         8.55        32.25 
TCGA-13-0768 TCGA-13-0807 TCGA-13-0899 TCGA-13-0901 TCGA-13-2057 TCGA-23-1809 
        8.42        13.61        56.15        19.36        14.24         0.53 
TCGA-24-1103 TCGA-24-1555 TCGA-24-1842 TCGA-24-1844 TCGA-24-2030 TCGA-24-2261 
       54.08        88.50         8.32         3.72        53.95         0.79 
TCGA-24-2281 TCGA-25-1314 TCGA-25-1317 TCGA-25-2408 TCGA-29-2428 TCGA-31-1959 
       44.58        31.99         1.02        30.97        45.11         2.17 
TCGA-36-1578 TCGA-36-2529 TCGA-36-2544 TCGA-57-1583 TCGA-59-2352 TCGA-61-1730 
       27.85        35.05        20.98        11.38         9.40         4.34 
TCGA-61-2612 
        6.35 

$`14Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       71.47        82.36        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 
       29.06        84.20        55.40        48.89        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 
       74.89        41.59        57.57        61.87        55.36        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        5.85         3.02        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        4.50       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 
       26.93        12.46        54.31        25.91        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       33.24        32.28        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       15.12        19.86         6.21        24.59        44.55        39.58 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
        2.73        12.39        31.07        15.19        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 
        2.47        11.18        11.38        11.54        34.06        31.04 
TCGA-13-0766 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
       21.40        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        35.28        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       57.47        57.07        47.38        48.33        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       14.89        13.81         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.61         7.36         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 
        4.77         4.14         2.56         3.88         3.09        12.23 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
        8.58        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
        2.93         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 
        2.24        51.35        54.51         3.22        31.20        68.68 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        4.57        33.30        86.01       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       39.09        33.47        58.13        24.95       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       22.32        63.55        47.41         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       43.53         8.55        72.92        12.46        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
        9.11         3.42         1.18        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       58.09        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       47.70        25.87        10.26        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
       48.33        38.24         3.48         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
       34.82       109.68        14.43        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       44.48        57.07        36.16         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       70.45         0.82        67.36        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 
       55.86        53.26         1.02        26.93        51.06        37.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
        7.86         0.30        56.94        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       14.93        24.99        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
       42.02         2.96        29.00        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       68.28         0.53        16.90        18.64        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       17.29        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        7.20         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
        4.87        42.25        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       51.91        36.26         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       44.91        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 
       22.45         6.71        42.51        44.09        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.23        24.69        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 TCGA-36-2547 
       25.08        23.80        21.60         2.24        18.31        20.52 
TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
       14.17        16.14        11.47        14.30         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.46         7.63        24.03        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
      116.12        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 
        8.05        20.94        31.40        18.54        27.88        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
        9.07        34.13        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       56.58        67.73        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88        31.07         8.58 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.53               0.26 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             88.50             180.16 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             20.98              28.70 
[1] "0.5 - 88.5 (21.0)"  "0.3 - 180.2 (28.7)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
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        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
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        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
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        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
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        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
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        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
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        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
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        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
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        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
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        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
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        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D26V2, continuous
D26V3, multiclass
                    clus
vv                   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            30                518
  PERITONEUM (OVARY)                1                  1
D26V4, continuous
D26V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      0   31
  14Q GAIN WILD-TYPE    3  518
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 0                  3
  YES               31                518
D26V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     25    6
  14Q GAIN WILD-TYPE  423   98
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                25                423
  YES                6                 98

Clustering(27) Variable = 15q gain mutation analysis
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED    15  10
  15Q GAIN WILD-TYPE 246 275
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                25                521 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                10                275 
$`15Q GAIN MUTATED`
TCGA-10-0938 TCGA-13-0761 TCGA-13-0792 TCGA-13-0906 TCGA-20-1685 TCGA-20-1686 
       19.86        34.06        36.72        44.94        16.67         2.93 
TCGA-23-1021 TCGA-23-1022 TCGA-23-2079 TCGA-24-1427 TCGA-24-1551 TCGA-24-1558 
       47.54        42.51        91.66         4.80        51.91        19.53 
TCGA-24-2289 TCGA-25-1627 TCGA-29-1776 TCGA-31-1955 TCGA-36-1571 TCGA-36-2542 
       67.36         0.36        11.84        42.51        22.85        21.60 
TCGA-36-2544 TCGA-61-1730 TCGA-61-1907 TCGA-61-1915 TCGA-61-2009 TCGA-61-2097 
       20.98         4.34        31.30        67.73        39.85        60.62 
TCGA-61-2109 
       20.68 

$`15Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       38.37       119.08        29.06        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       27.88        28.64        64.64        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       45.34        29.16         9.47        57.73        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        8.55        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
      112.37        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       31.07        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.38        11.54        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       38.93        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       14.89        13.81         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.61         7.36         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 
       98.04        20.68        22.39        70.82        82.88        52.44 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       73.55        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.77         4.14         2.56         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       12.23         8.58        10.78         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       25.94        26.20        72.20        27.48        25.38        19.07 
TCGA-20-1687 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
        2.66        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
        3.22        31.20        68.68         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 
        0.53        24.95       115.89        87.48        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1428 
        0.76         6.25         6.02         5.95         5.36        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       41.06        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       70.45        44.58         0.82        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       20.58         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
       51.22        14.93        24.99        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       49.05         1.02        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 
       24.36        22.52        17.29        12.36        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
        9.76        38.07        51.91        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 
        0.26        48.07        44.91        34.78         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 
        1.18        57.57        24.26        30.05        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1956 TCGA-31-1959 
       30.18        18.77        22.45         6.71        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       28.73        29.06        21.53        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       25.74        27.85        24.23        24.69        35.05        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2543 
       29.49        29.79        25.91        25.08        23.80         2.24 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       18.31        20.52        14.17        16.14        11.47        14.30 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       21.14         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       31.40        18.54        27.88        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 
       37.02        42.48        48.92        56.58        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       30.61        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 
        4.77        51.72        71.74        61.64        58.39        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
       55.50         6.48        76.83        44.52       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       51.91        15.88         6.35        31.07         8.58 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.36               0.26 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             91.66             180.16 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             31.30              28.34 
[1] "0.4 - 91.7 (31.3)"  "0.3 - 180.2 (28.3)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
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        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
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        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
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"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
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        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
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        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
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        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
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        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
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        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
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        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
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        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
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        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
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        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
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        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D27V2, continuous
D27V3, multiclass
                    clus
vv                   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            26                522
  PERITONEUM (OVARY)                0                  2
D27V4, continuous
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 2                 74 
        TCGA-04-1346         TCGA-04-1347         TCGA-04-1351 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-04-1356         TCGA-04-1367         TCGA-10-0925 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-10-0926         TCGA-13-0714         TCGA-13-0720 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0724         TCGA-13-0755         TCGA-13-0757 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0758         TCGA-13-0760         TCGA-13-0762 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0764         TCGA-13-0768         TCGA-13-0791 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0793         TCGA-13-0794         TCGA-13-0795 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0797         TCGA-13-0799         TCGA-13-0801 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0802         TCGA-13-0885         TCGA-13-0887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0891 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0897         TCGA-13-0900         TCGA-13-0901 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0910         TCGA-13-0911         TCGA-13-0912 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-0913         TCGA-13-0919         TCGA-13-1404 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1405         TCGA-13-1409         TCGA-13-1410 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1412         TCGA-13-1482         TCGA-13-1483 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1484         TCGA-13-1485         TCGA-13-1488 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1489         TCGA-13-1491         TCGA-13-1492 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1497         TCGA-13-1498 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1499         TCGA-13-1500         TCGA-13-1501 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1504         TCGA-13-1506         TCGA-13-1507 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-1509         TCGA-13-1511         TCGA-13-1512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2071         TCGA-24-1614 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-24-1930         TCGA-61-2101 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
D27V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      0   26
  15Q GAIN WILD-TYPE    3  523
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 0                  3
  YES               26                523
D27V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     22    4
  15Q GAIN WILD-TYPE  426  100
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                22                426
  YES                4                100

Clustering(28) Variable = 16p gain mutation analysis
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    20  18
  16P GAIN WILD-TYPE 241 267
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                38                508 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                18                267 
$`16P GAIN MUTATED`
TCGA-04-1346 TCGA-04-1351 TCGA-04-1371 TCGA-04-1542 TCGA-04-1646 TCGA-04-1648 
       65.49        65.46        82.36        84.20        27.88        28.64 
TCGA-04-1655 TCGA-09-0364 TCGA-09-1672 TCGA-10-0926 TCGA-13-0888 TCGA-13-0889 
       45.34        29.16         5.85        25.91        70.39        61.81 
TCGA-13-0901 TCGA-13-2059 TCGA-23-1021 TCGA-23-1110 TCGA-23-1124 TCGA-23-1809 
       19.36        12.23        47.54        54.51        58.13         0.53 
TCGA-23-2079 TCGA-24-1558 TCGA-24-1604 TCGA-24-1614 TCGA-24-1842 TCGA-24-1845 
       91.66        19.53        88.34        48.33         8.32         3.81 
TCGA-24-2289 TCGA-25-1871 TCGA-25-1877 TCGA-25-2399 TCGA-29-1774 TCGA-29-1784 
       67.36        24.99        18.05        19.99        17.29         5.36 
TCGA-29-2432 TCGA-36-2547 TCGA-36-2552 TCGA-42-2588 TCGA-59-2372 TCGA-61-1915 
       11.84        20.52        11.47         9.44        44.78        67.73 
TCGA-61-2009 TCGA-61-2101 
       39.85        55.50 

$`16P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       18.51        11.87        63.06        48.76        21.57        63.98 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       49.28        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       55.40        48.89        64.64        36.23        31.86        47.70 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       30.48        17.98         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0927 
       39.75        20.91        26.93        12.46        54.31        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       18.48        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.80        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0890 
       68.91       107.18        91.40        74.27        66.64        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 
       69.01        43.36        57.47        56.15        57.07        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        5.92         6.84         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 
       70.82        82.88        52.44        73.55        38.17        49.22 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
        4.24        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       16.57         4.21         4.41         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
        3.88         3.09        14.24         8.58        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        6.28        23.05        25.94        26.20        72.20        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 
       25.38        19.07        16.67         2.93         2.66        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 
       29.10        18.87         2.24        51.35         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
        6.38        39.09        33.47        24.95       115.89        87.48 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
       19.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       54.08        63.55        47.41         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       43.53         8.55        72.92        12.46        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
        9.11         3.42         1.18        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 
       58.09        88.50        70.62        39.88        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1616 
       47.70        25.87        10.26        17.23        90.15        38.24 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.48         3.72         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
       70.45        44.58         0.82        36.23        16.64        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       35.54        51.22        14.93        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2400 
        1.02        38.04         3.02        12.00        45.01        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       47.18       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       68.28         0.53        16.90        18.64        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       41.95        29.23        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       12.36        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       42.25        11.47         9.76        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2548 TCGA-36-2551 TCGA-42-2582 TCGA-42-2589 TCGA-42-2590 
       18.31        14.17        16.14        14.30         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.63        24.03        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 
      116.12         9.40        34.39         2.14         5.39        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       13.02         9.07        34.13        31.30        37.02        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       48.92        56.58        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 
        5.52        14.50        17.98         3.98        30.61        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 
       71.74        61.64        58.39        60.62        65.49         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       76.83        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       15.88         6.35        31.07         8.58 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.53               0.26 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             91.66             180.16 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             28.90              28.26 
[1] "0.5 - 91.7 (28.9)"  "0.3 - 180.2 (28.3)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D28V2, continuous
D28V3, multiclass
                    clus
vv                   16P GAIN MUTATED 16P GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            38                510
  PERITONEUM (OVARY)                0                  2
D28V4, continuous
D28V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      0   38
  16P GAIN WILD-TYPE    3  511
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 0                  3
  YES               38                511
D28V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     32    6
  16P GAIN WILD-TYPE  416   98
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                32                416
  YES                6                 98

Clustering(29) Variable = 16q gain mutation analysis
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED     8   9
  16Q GAIN WILD-TYPE 253 276
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                17                529 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 9                276 
$`16Q GAIN MUTATED`
TCGA-04-1542 TCGA-04-1646 TCGA-09-0364 TCGA-09-1672 TCGA-13-0799 TCGA-13-1510 
       84.20        27.88        29.16         5.85         7.79         2.56 
TCGA-13-2059 TCGA-23-1021 TCGA-23-1024 TCGA-23-1809 TCGA-24-1604 TCGA-25-1877 
       12.23        47.54        15.39         0.53        88.34        18.05 
TCGA-29-1774 TCGA-36-2538 TCGA-57-1583 TCGA-59-2372 TCGA-61-2101 
       17.29        25.08        11.38        44.78        55.50 

$`16Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
       38.37       119.08        29.06        55.40        48.89        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 
       64.64        36.23        31.86        47.70        45.34         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
       17.98         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       18.48        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.80        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       32.25        31.04        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0800 TCGA-13-0801 
       28.70        30.35        19.56         8.71         8.12         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       67.99        69.01        43.36        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       13.81         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        7.36         6.05         5.92         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       20.68        22.39        70.82        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 
        4.14         3.88         3.09        14.24         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       42.51        40.54        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       29.10        18.87         2.24        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       31.20        68.68         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 
        4.27         6.38        39.09        33.47        58.13        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       39.88        19.53        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       10.26        17.23        90.15        48.33        38.24         8.32 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
        3.48         3.72         3.81         4.37        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 
        5.49         9.80        22.65        30.21        16.41        11.05 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       81.11         4.87       151.99        44.84        58.16        34.82 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
      109.68        14.43        53.95        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       44.48        57.07        36.16         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
       31.63        70.45        44.58         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       16.64        33.11        55.86        53.26         1.02        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       36.95        33.96         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       85.05        13.02        49.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 
       12.00        45.01        19.99        42.02         2.96        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       30.97        26.96        78.87        44.71        47.18       101.75 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       38.53         0.79        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 
       34.62        17.00        85.68        66.77        62.93        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 
       31.23        22.98        24.36        22.52        12.36        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       12.30        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
       86.17        65.00        62.47        45.11         4.87        42.25 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       11.84        11.47         9.76        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.91        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 
       20.52        14.17        16.14        11.47        14.30         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 TCGA-57-1585 
        7.56         7.46         7.63        24.03        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
       11.41        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       42.48        48.92        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       30.61        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       60.62        65.49         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
      125.72        22.22        51.91        15.88         6.35        31.07 
TCGA-61-2614 
        8.58 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              0.53               0.26 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             88.34             180.16 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             18.05              28.70 
[1] "0.5 - 88.3 (18.1)"  "0.3 - 180.2 (28.7)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
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        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
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        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
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        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
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        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
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        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
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        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
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        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
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        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D29V2, continuous
D29V3, multiclass
                    clus
vv                   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            17                531
  PERITONEUM (OVARY)                0                  2
D29V4, continuous
D29V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      0   17
  16Q GAIN WILD-TYPE    3  532
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 0                  3
  YES               17                532
D29V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     14    3
  16Q GAIN WILD-TYPE  434  101
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                14                434
  YES                3                101

Clustering(30) Variable = 17p gain mutation analysis
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED    10   8
  17P GAIN WILD-TYPE 251 277
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                18                528 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 8                277 
$`17P GAIN MUTATED`
TCGA-04-1525 TCGA-09-2048 TCGA-09-2051 TCGA-13-0800 TCGA-13-1489 TCGA-13-2057 
       38.37         4.50        63.09         8.12        82.88        14.24 
TCGA-13-2060 TCGA-20-1683 TCGA-23-1114 TCGA-24-1474 TCGA-25-1877 TCGA-29-2429 
        8.58        25.38        68.68        22.19        18.05         4.87 
TCGA-36-1578 TCGA-57-1582 TCGA-61-1900 TCGA-61-1904 TCGA-61-2097 TCGA-61-2612 
       27.85        24.03         5.79         9.07        60.62         6.35 

$`17P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       29.16         9.47        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 
       55.36        30.48        17.98         5.85         3.02         8.55 
TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 
       97.55         6.15         6.12        35.15       112.37        71.11 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       35.41        35.80        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       44.55        39.58         2.73        12.39        31.07        15.19 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       17.79        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 
       61.81        67.99        69.01        43.36        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       57.07        19.36        47.38        48.33        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       14.89        13.81         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.61         7.36         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       98.04        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 
        4.14         2.56         3.88         3.09        12.23        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       27.48        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
        3.22        31.20         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 
        4.27         6.38        39.09        33.47        58.13         0.53 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 
       24.95       115.89        87.48        91.66        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
        2.76         4.70         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       21.80        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        0.76         6.25         6.02         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
       17.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        1.18        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       39.88        19.53        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       10.26        17.23        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
        8.32         3.48         3.72         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       64.01        44.48        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       65.00        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       24.99        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       29.23        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       12.36        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        5.36        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 
       21.53        22.85        22.55         8.55        30.05        25.74 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       18.31        20.52        14.17        16.14        11.47        14.30 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 
        9.44         7.56         7.46         7.63        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        5.39        44.78        11.11         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       18.54        27.88         4.34        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        8.42        11.41        13.02        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       42.48        48.92        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       30.61        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       65.49        55.50         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2613 TCGA-61-2614 
      125.72        22.22        51.91        15.88        31.07         8.58 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              4.50               0.26 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             82.88             180.16 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            20.120             28.845 
[1] "4.5 - 82.9 (20.1)"  "0.3 - 180.2 (28.8)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D30V2, continuous
D30V3, multiclass
                    clus
vv                   17P GAIN MUTATED 17P GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            18                530
  PERITONEUM (OVARY)                0                  2
D30V4, continuous
D30V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      0   18
  17P GAIN WILD-TYPE    3  531
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 0                  3
  YES               18                531
D30V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     17    1
  17P GAIN WILD-TYPE  431  103
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                17                431
  YES                1                103

Clustering(31) Variable = 17q gain mutation analysis
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    18  22
  17Q GAIN WILD-TYPE 243 263
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                40                506 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                22                263 
$`17Q GAIN MUTATED`
TCGA-04-1331 TCGA-04-1337 TCGA-04-1342 TCGA-04-1356 TCGA-04-1525 TCGA-09-1665 
       40.24         2.01        18.51        49.28        38.37        41.59 
TCGA-09-1668 TCGA-09-2045 TCGA-09-2048 TCGA-09-2051 TCGA-10-0931 TCGA-10-0936 
       55.36        35.15         4.50        63.09        32.28        35.80 
TCGA-13-0794 TCGA-13-0800 TCGA-13-0897 TCGA-13-0921 TCGA-13-1408 TCGA-13-1477 
       30.35         8.12        57.47         4.64         5.92        54.61 
TCGA-13-1483 TCGA-13-1489 TCGA-13-2057 TCGA-13-2060 TCGA-23-1114 TCGA-23-1119 
       29.39        82.88        14.24         8.58        68.68       129.96 
TCGA-24-1552 TCGA-24-1567 TCGA-24-1614 TCGA-25-1319 TCGA-25-1877 TCGA-29-1693 
       41.39        17.23        48.33        65.00        18.05       101.75 
TCGA-30-1862 TCGA-30-1866 TCGA-36-1574 TCGA-57-1582 TCGA-61-1722 TCGA-61-1737 
        6.08        36.62        22.55        24.03         8.05        44.84 
TCGA-61-1900 TCGA-61-1914 TCGA-61-2098 TCGA-61-2612 
        5.79        56.58        65.49         6.35 

$`17Q GAIN WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 
       41.00         1.81        49.15        46.62        11.87        65.49 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1361 
       63.06        48.76        21.57        63.98        65.46        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       44.32        33.67        76.54        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 
       41.59        19.99       119.08        29.06        84.20        55.40 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 
       48.89        27.88        28.64        64.64        36.23        31.86 
TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 
       47.70        45.34        29.16         9.47        57.73        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 
       35.54         9.96        38.43        89.33        74.89        57.57 
TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 
       61.87        30.48        17.98         5.85         3.02         8.55 
TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 
       97.55         6.15         6.12       112.37        71.11        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 
       18.48        33.24        11.70         3.88        35.41        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       11.18        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 
       21.40         8.42        38.93        36.72        28.70        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        8.71         7.79         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       44.94        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       21.14        14.89        13.81         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        6.61         7.36         6.05         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
        5.33        87.06        61.71        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       70.82        52.44        73.55        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
        4.21         4.41         4.77         4.14         2.56         3.88 
TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
        3.09        12.23        10.78         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       25.94        26.20        72.20        27.48        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       15.39        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       18.87         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 
        4.57        33.30        86.01         4.27         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       33.47        58.13         0.53        24.95       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       18.67        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       58.09        88.50        70.62        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 
       45.50        47.70        25.87        10.26        90.15        88.34 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       38.24         8.32         3.48         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
       11.28         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       16.41        11.05        81.11         4.87       151.99        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       58.16        34.82       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       34.98        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       24.99        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       38.53         0.79        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 
       34.62        17.00        85.68        66.77        62.93        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       31.23        22.98        24.36        22.52        17.29        12.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       11.84        12.30        14.93         8.35         7.20         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       34.78         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
        8.55        30.05        25.74        27.85        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
       14.17        16.14        11.47        14.30         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.46         7.63        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
       11.11        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       31.76        28.47        48.79        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
       43.69         1.41         8.42        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1915 
       34.13        31.30        37.02        42.48        48.92        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       17.98         3.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       61.64        58.39        60.62        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       20.68        44.52       125.72        22.22        51.91        15.88 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              2.01               0.26 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            129.96             180.16 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            35.475             27.865 
[1] "2.0 - 130.0 (35.5)" "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
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        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
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        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
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        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
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        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
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        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
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        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
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        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
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        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
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        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
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        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
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        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
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        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
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        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
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        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
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        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
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        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
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        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
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        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
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        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
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        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
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        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
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        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
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        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
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        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
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        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
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        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
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        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
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        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
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        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
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        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
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        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
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        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
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        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
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        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
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        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
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        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
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        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
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        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
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        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
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        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
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        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
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        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
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        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
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        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
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        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
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        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D31V2, continuous
D31V3, multiclass
                    clus
vv                   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            41                507
  PERITONEUM (OVARY)                0                  2
D31V4, continuous
D31V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      0   41
  17Q GAIN WILD-TYPE    3  508
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 0                  3
  YES               41                508
D31V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     32    9
  17Q GAIN WILD-TYPE  416   95
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                32                416
  YES                9                 95

Clustering(32) Variable = 18p gain mutation analysis
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    47  42
  18P GAIN WILD-TYPE 214 243
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                89                457 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                42                243 
$`18P GAIN MUTATED`
TCGA-04-1347 TCGA-04-1361 TCGA-04-1371 TCGA-04-1516 TCGA-04-1525 TCGA-04-1542 
       63.06        32.52        82.36        41.59        38.37        84.20 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1652 TCGA-09-1665 TCGA-09-2055 TCGA-09-2056 
       48.89        27.88        31.86        41.59        26.93        12.46 
TCGA-10-0937 TCGA-13-0717 TCGA-13-0762 TCGA-13-0768 TCGA-13-0795 TCGA-13-0885 
       15.12        24.59        32.25         8.42        19.56        91.40 
TCGA-13-0888 TCGA-13-0893 TCGA-13-0899 TCGA-13-0901 TCGA-13-0904 TCGA-13-0920 
       70.39        43.36        56.15        19.36        48.33        13.81 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1489 TCGA-13-1491 TCGA-13-1497 
        6.05         5.92         4.70        82.88        52.44        54.31 
TCGA-13-1510 TCGA-13-2059 TCGA-13-2060 TCGA-20-1686 TCGA-23-1022 TCGA-23-1032 
        2.56        12.23         8.58         2.93        42.51         2.24 
TCGA-23-1110 TCGA-23-1114 TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 
       54.51        68.68         6.38        33.47        58.13         0.53 
TCGA-23-2077 TCGA-24-0968 TCGA-24-1418 TCGA-24-1430 TCGA-24-1466 TCGA-24-1558 
      115.89        19.63         7.99        28.34        45.14        19.53 
TCGA-24-1567 TCGA-24-1616 TCGA-24-1845 TCGA-24-1850 TCGA-24-1924 TCGA-24-2020 
       17.23        38.24         3.81         5.49        30.21       151.99 
TCGA-24-2026 TCGA-24-2030 TCGA-24-2289 TCGA-24-2297 TCGA-25-1314 TCGA-25-1318 
       34.82        53.95        67.36        55.86        31.99        34.98 
TCGA-25-1319 TCGA-25-1321 TCGA-25-1628 TCGA-25-1635 TCGA-25-2400 TCGA-29-1695 
       65.00        33.96        20.58        51.22        42.02         0.79 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1778 TCGA-29-1784 TCGA-29-2425 TCGA-29-2432 
       34.62        17.00        14.93         5.36        65.00        11.84 
TCGA-36-1571 TCGA-36-2537 TCGA-36-2547 TCGA-42-2589 TCGA-57-1583 TCGA-57-1586 
       22.85        25.91        20.52         7.56        11.38        22.32 
TCGA-57-1994 TCGA-61-1722 TCGA-61-1730 TCGA-61-1733 TCGA-61-1899 TCGA-61-1907 
       25.02         8.05         4.34        31.76         8.42        31.30 
TCGA-61-1910 TCGA-61-1917 TCGA-61-2018 TCGA-61-2096 TCGA-61-2614 
       37.02        43.43        45.40        58.39         8.58 

$`18P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       18.51        11.87        65.49        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       65.46        49.28        44.32        33.67        76.54        71.47 
TCGA-04-1514 TCGA-04-1517 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1648 
       56.55        19.99       119.08        29.06        55.40        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       64.64        36.23        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       74.89        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       20.91        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0938 
       32.28        11.70         3.88        35.41        35.80        19.86 
TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
        6.21        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 TCGA-13-0792 
       11.54        34.06        31.04        21.40        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       28.70        30.35         8.71         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
      107.18        74.27        66.64        61.81        67.99        69.01 
TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       57.47        57.07        47.38        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
        4.64         6.41         6.08        10.88         6.61         7.36 
TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        6.84         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1492 
       29.39        98.04        20.68        22.39        70.82        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       38.17        49.22         4.24        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        3.88         3.09        14.24        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 
       19.07        16.67         2.66        47.54        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       51.35         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 
      129.96         4.27        39.09        24.95        87.48        91.66 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       77.00        49.84         2.76         4.70         4.50         7.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 
       63.55        47.41         6.31         6.38         7.82         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        0.76         6.25         6.02         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       17.36        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       12.46       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 
       44.09        45.50        47.70        25.87        10.26        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 
       88.34        48.33         8.32         3.48         3.72         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 
       11.28         5.75         9.80        22.65        16.41        11.05 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
       81.11         4.87        44.84        58.16       109.68        14.43 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2298 TCGA-25-1312 
        0.82        36.23        16.64        33.11        53.26         1.02 
TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1322 
       26.93        51.06        37.02         1.02        36.95         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 
        7.86         0.30        56.94        60.59        35.54        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 
       38.04         3.02        12.00        45.01        19.99         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
      101.75        38.53        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       24.36        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 
        8.35         7.20        34.62        86.17        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
        4.87        42.25        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       21.53        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2590 
       14.17        16.14        11.47        14.30         9.44         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 
        7.63        24.03        21.14         1.74        28.96        25.05 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1724 TCGA-61-1725 
        2.14         5.39        44.78        11.11        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       18.54        27.88        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 
        2.43        33.67        43.69         1.41         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       13.02         9.07        34.13        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       67.73        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       17.98         3.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.96         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       60.62        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       44.52       125.72        22.22        51.91        15.88         6.35 
TCGA-61-2613 
       31.07 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.53               0.26 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            151.99             180.16 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             31.30              27.88 
[1] "0.5 - 152.0 (31.3)" "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
[1] "hr=" "1.2"
D32V2, continuous
D32V3, multiclass
                    clus
vv                   18P GAIN MUTATED 18P GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            89                459
  PERITONEUM (OVARY)                0                  2
D32V4, continuous
D32V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      0   89
  18P GAIN WILD-TYPE    3  460
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 0                  3
  YES               89                460
D32V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     80    9
  18P GAIN WILD-TYPE  368   95
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                80                368
  YES                9                 95

Clustering(33) Variable = 18q gain mutation analysis
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    21  22
  18Q GAIN WILD-TYPE 240 263
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                43                503 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                22                263 
$`18Q GAIN MUTATED`
TCGA-04-1516 TCGA-04-1542 TCGA-04-1646 TCGA-09-1661 TCGA-09-1665 TCGA-13-0717 
       41.59        84.20        27.88        38.43        41.59        24.59 
TCGA-13-0762 TCGA-13-0901 TCGA-13-0904 TCGA-13-1410 TCGA-13-1489 TCGA-13-1497 
       32.25        19.36        48.33         4.70        82.88        54.31 
TCGA-13-1510 TCGA-13-2060 TCGA-23-1114 TCGA-23-1123 TCGA-23-1809 TCGA-24-0968 
        2.56         8.58        68.68        33.47         0.53        19.63 
TCGA-24-1430 TCGA-24-1435 TCGA-24-1466 TCGA-24-1845 TCGA-24-1924 TCGA-24-2026 
       28.34        43.53        45.14         3.81        30.21        34.82 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1635 TCGA-25-2397 TCGA-29-1695 TCGA-29-1705 
       34.98        65.00        51.22        12.00         0.79        18.25 
TCGA-29-1778 TCGA-29-1784 TCGA-31-1951 TCGA-36-2537 TCGA-61-1722 TCGA-61-1733 
       14.93         5.36        22.45        25.91         8.05        31.76 
TCGA-61-1899 TCGA-61-1907 TCGA-61-1917 TCGA-61-1998 TCGA-61-2008 TCGA-61-2101 
        8.42        31.30        43.43         5.52        30.61        55.50 
TCGA-61-2614 
        8.58 

$`18Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 
       76.54        71.47        82.36        56.55        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 
      119.08        29.06        55.40        48.89        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 
       57.73        17.95        35.54         9.96        89.33        74.89 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 
       57.57        61.87        55.36        30.48        17.98         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        3.02         8.55        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        4.50       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 
       26.93        12.46        54.31        25.91        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       33.24        32.28        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       15.12        19.86         6.21        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 
       11.18        11.38        11.54        34.06        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       35.28        35.28        13.61        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       74.27        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 TCGA-13-0905 
       43.36        57.47        56.15        57.07        47.38        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       44.94        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       21.14        14.89        13.81         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       10.88         6.61         7.36         6.05         5.92         6.84 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       98.04        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       38.17        49.22         4.24        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 
        3.88         3.09        14.24        12.23        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        6.28        23.05        25.94        26.20        72.20        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       25.38        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
        3.22        31.20         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
        4.27         6.38        39.09        58.13        24.95       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        4.50         7.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 
        5.95         5.36         4.80        17.36        19.17        18.67 
TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
        8.55        72.92        12.46       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 
        1.18        22.19        26.96        57.37        64.27        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 
       56.58        41.06        51.91        41.39        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       70.62        39.88        19.53        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       25.87        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 
       38.24         8.32         3.48         3.72         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 
        5.75         5.49         9.80        22.65        16.41        11.05 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
       81.11         4.87       151.99        44.84        58.16       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 
       33.11        55.86        53.26         1.02        26.93        31.99 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
       51.06        37.02         1.02        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       20.58         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       14.93        24.99        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
        1.02        38.04         3.02        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
       47.18       101.75        38.53        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1707 TCGA-29-1710 
        0.53        16.90        18.64        59.67        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 
       34.62        17.00        85.68        66.77        62.93        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       31.23        22.98        24.36        22.52        17.29        12.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 
       11.84        12.30         8.35         7.20        34.62        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       65.00        62.47        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
       11.47         9.76        38.07        51.91        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       45.57        30.18        18.77         6.71        42.51        44.09 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 
        2.17        28.73        29.06        21.53        22.85        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
        8.55        30.05        25.74        27.85        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 TCGA-36-2540 
       35.05        33.01        29.49        29.79        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       16.14        11.47        14.30         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.63        24.03        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
       11.11        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
       43.69         1.41         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       34.13        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       15.75        38.17         1.97        14.50        17.98         3.98 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.77        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       65.49         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
       22.22        51.91        15.88         6.35        31.07 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.53               0.26 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             84.20             180.16 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             30.21              28.18 
[1] "0.5 - 84.2 (30.2)"  "0.3 - 180.2 (28.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
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        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
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        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
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        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
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        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
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        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
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        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
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        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
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        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
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        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
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        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
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        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
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        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
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        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
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        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
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        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
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        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
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        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
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        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
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        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
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        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
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        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
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        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
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        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
[1] "hr=" "1.1"
D33V2, continuous
D33V3, multiclass
                    clus
vv                   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            43                505
  PERITONEUM (OVARY)                0                  2
D33V4, continuous
D33V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      0   43
  18Q GAIN WILD-TYPE    3  506
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 0                  3
  YES               43                506
D33V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED     38    5
  18Q GAIN WILD-TYPE  410   99
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                38                410
  YES                5                 99

Clustering(34) Variable = 19p gain mutation analysis
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    60  53
  19P GAIN WILD-TYPE 201 232
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
               113                433 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                53                232 
$`19P GAIN MUTATED`
TCGA-04-1332 TCGA-04-1346 TCGA-04-1514 TCGA-04-1525 TCGA-04-1542 TCGA-04-1648 
       41.00        65.49        56.55        38.37        84.20        28.64 
TCGA-04-1652 TCGA-09-0367 TCGA-09-1667 TCGA-09-1674 TCGA-09-2043 TCGA-09-2054 
       31.86        17.95        61.87         8.55         6.15        20.91 
TCGA-10-0933 TCGA-10-0938 TCGA-13-0727 TCGA-13-0764 TCGA-13-0795 TCGA-13-0802 
       11.70        19.86        15.19        31.04        19.56         8.19 
TCGA-13-0805 TCGA-13-0884 TCGA-13-0899 TCGA-13-0910 TCGA-13-0921 TCGA-13-1408 
       35.28       107.18        56.15        37.08         4.64         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1482 TCGA-13-1491 TCGA-13-1495 TCGA-13-1506 
        6.84         4.70        61.71        52.44        49.22         4.41 
TCGA-13-1509 TCGA-13-1510 TCGA-13-2057 TCGA-20-0990 TCGA-20-0991 TCGA-20-1686 
        4.14         2.56        14.24        25.94        26.20         2.93 
TCGA-23-1024 TCGA-23-1109 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1121 
       15.39        51.35         3.22         4.57        33.30         6.38 
TCGA-23-1124 TCGA-23-1809 TCGA-24-0966 TCGA-24-0970 TCGA-24-0982 TCGA-24-1416 
       58.13         0.53         7.63        11.64        22.32         6.38 
TCGA-24-1417 TCGA-24-1426 TCGA-24-1428 TCGA-24-1436 TCGA-24-1474 TCGA-24-1557 
        7.82         5.36        17.36         8.55        22.19        39.88 
TCGA-24-1558 TCGA-24-1604 TCGA-24-1616 TCGA-24-1845 TCGA-24-1850 TCGA-24-1920 
       19.53        88.34        38.24         3.81         5.49         9.80 
TCGA-24-1923 TCGA-24-2020 TCGA-24-2261 TCGA-24-2267 TCGA-24-2281 TCGA-25-1317 
       22.65       151.99         0.79        47.54        44.58         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1323 TCGA-25-1329 TCGA-25-1877 
       34.98        65.00        33.96        12.00         2.96        18.05 
TCGA-25-2399 TCGA-25-2400 TCGA-29-1695 TCGA-29-1698 TCGA-29-1702 TCGA-29-1703 
       19.99        42.02         0.79        68.28        18.64        59.67 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1764 TCGA-29-1770 TCGA-29-1775 TCGA-29-1778 
       34.62        17.00        62.93        24.36        12.36        14.93 
TCGA-29-1783 TCGA-29-2414 TCGA-29-2432 TCGA-29-2434 TCGA-30-1714 TCGA-30-1856 
        7.20        86.17        11.84        11.47        38.07        15.68 
TCGA-30-1859 TCGA-30-1892 TCGA-31-1950 TCGA-31-1951 TCGA-36-2529 TCGA-36-2547 
       48.07        48.79        18.77        22.45        35.05        20.52 
TCGA-42-2582 TCGA-57-1586 TCGA-59-2348 TCGA-59-2351 TCGA-59-2355 TCGA-61-1904 
       14.30        22.32       180.16       116.12         2.14         9.07 
TCGA-61-1911 TCGA-61-1915 TCGA-61-1918 TCGA-61-2000 TCGA-61-2009 TCGA-61-2018 
       42.48        67.73        15.75        14.50        39.85        45.40 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2101 TCGA-61-2104 TCGA-61-2113 
       58.39        60.62        55.50        76.83        22.22 

$`19P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24         1.81        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       11.87        63.06        48.76        21.57        63.98        65.46 
TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       49.28        32.52        44.32        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 
       82.36        41.59        19.99       119.08        29.06        55.40 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 
       48.89        27.88        64.64        36.23        47.70        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
       29.16         9.47        57.73        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1668 TCGA-09-1669 
       89.33        74.89        41.59        57.57        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 
       17.98         5.85         3.02        97.55         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2055 
        4.50       112.37        71.11        63.09        39.75        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 
       32.28         3.88        35.41        35.80        15.12         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       24.59        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       17.79        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 
       34.06        32.25        21.40         8.42        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       28.70        30.35         8.71         7.79         8.12         8.28 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 
       43.82        35.28        13.61        68.91        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       57.47        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.94        44.84        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       14.89        13.81         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        7.36         6.05         4.21         5.33        54.61        87.06 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       29.39        98.04        20.68        22.39        70.82        82.88 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       73.55        38.17         4.24        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 TCGA-13-1511 
       13.97        32.84        16.57         4.21         4.77         3.88 
TCGA-13-1512 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        3.09        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       23.05        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 
        2.66        47.54        42.51        40.54        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1110 
       49.41         8.81        29.10        18.87         2.24        54.51 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 
       31.20        68.68        86.01       129.96         4.27        39.09 
TCGA-23-1123 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
       33.47        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0968 TCGA-24-0975 
       49.84         2.76         4.70         4.50        19.63        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
       41.56         7.66        54.08        63.55        47.41         6.31 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.99         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 
        4.80        28.34        19.17        18.67        43.53        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1560 
       51.91        41.39        58.09        88.50        70.62        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       45.50        47.70        25.87        10.26        17.23        90.15 
TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 
       48.33         8.32         3.48         3.72         4.37        11.28 
TCGA-24-1849 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
        5.75        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
        0.36        31.63        70.45         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       16.64        33.11        55.86        53.26         1.02        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1320 TCGA-25-1322 TCGA-25-1623 
       31.99        51.06        37.02        36.95         2.99        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       85.05        13.02        49.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       12.00        45.01         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 
       78.87        44.71        47.18       101.75        38.53        33.70 
TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       31.17         0.53        16.90        18.25        41.95        29.23 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 
       85.68        66.77        39.09        31.23        22.98        22.52 
TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 
       17.29        11.84        12.30         8.35         5.36        34.62 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2436 
       65.00        62.47        45.11         4.87        42.25         9.76 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 
       51.91        36.26         2.47         0.26        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       45.57        30.18         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       28.73        29.06        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 
       30.05        25.74        27.85        24.23        24.69        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 
        2.24        20.98        18.31        14.17        16.14        11.47 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 
       21.14         1.74        28.96        25.05        25.02        80.12 
TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
       22.32         9.40        34.39         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       33.67        43.69         1.41         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 
       13.02        34.13        31.30        37.02        48.92        56.58 
TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2002 TCGA-61-2003 
       43.43        38.17         1.97         5.52        17.98         3.98 
TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 TCGA-61-2088 
       30.61        30.64         1.18        45.96         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2098 TCGA-61-2102 TCGA-61-2109 
       51.72        71.74        61.64        65.49         6.48        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
       44.52       125.72        51.91        15.88         6.35        31.07 
TCGA-61-2614 
        8.58 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.53               0.26 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            180.16             129.96 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             22.19              29.16 
[1] "0.5 - 180.2 (22.2)" "0.3 - 130.0 (29.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D34V2, continuous
D34V3, multiclass
                    clus
vv                   19P GAIN MUTATED 19P GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           113                435
  PERITONEUM (OVARY)                1                  1
D34V4, continuous
D34V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      1  113
  19P GAIN WILD-TYPE    2  436
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 1                  2
  YES              113                436
D34V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED     94   20
  19P GAIN WILD-TYPE  354   84
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                94                354
  YES               20                 84

Clustering(35) Variable = 19q gain mutation analysis
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    43  47
  19Q GAIN WILD-TYPE 218 238
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                90                456 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                47                238 
$`19Q GAIN MUTATED`
TCGA-04-1332 TCGA-04-1346 TCGA-04-1348 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       41.00        65.49        48.76        41.59        19.99        38.37 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1652 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 
       29.06        84.20        31.86        29.16         9.47        17.95 
TCGA-09-1674 TCGA-09-2043 TCGA-10-0933 TCGA-13-0717 TCGA-13-0727 TCGA-13-0795 
        8.55         6.15        11.70        24.59        15.19        19.56 
TCGA-13-0802 TCGA-13-0885 TCGA-13-0920 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 
        8.19        91.40        13.81         5.92         4.70         4.21 
TCGA-13-1492 TCGA-13-1495 TCGA-13-1506 TCGA-20-0990 TCGA-20-0991 TCGA-20-1686 
       73.55        49.22         4.41        25.94        26.20         2.93 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1121 TCGA-23-1809 
       54.51         3.22         4.57        33.30         6.38         0.53 
TCGA-23-2084 TCGA-24-1417 TCGA-24-1418 TCGA-24-1426 TCGA-24-1428 TCGA-24-1431 
       49.84         7.82         7.99         5.36        17.36        19.17 
TCGA-24-1436 TCGA-24-1548 TCGA-24-1550 TCGA-24-1552 TCGA-24-1557 TCGA-24-1558 
        8.55        16.21        41.06        41.39        39.88        19.53 
TCGA-24-1616 TCGA-24-1845 TCGA-24-1847 TCGA-24-1923 TCGA-24-2020 TCGA-24-2027 
       38.24         3.81        11.28        22.65       151.99       109.68 
TCGA-24-2033 TCGA-24-2261 TCGA-25-1317 TCGA-25-1318 TCGA-25-1321 TCGA-25-1323 
       18.48         0.79         1.02        34.98        33.96        12.00 
TCGA-25-1329 TCGA-25-2401 TCGA-29-1691 TCGA-29-1695 TCGA-29-1701 TCGA-29-1770 
        2.96         2.96        47.18         0.79        16.90        24.36 
TCGA-29-1775 TCGA-29-2429 TCGA-29-2432 TCGA-29-2434 TCGA-30-1714 TCGA-30-1718 
       12.36         4.87        11.84        11.47        38.07        51.91 
TCGA-30-1892 TCGA-31-1959 TCGA-36-1578 TCGA-36-2529 TCGA-57-1582 TCGA-57-1586 
       48.79         2.17        27.85        35.05        24.03        22.32 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2351 TCGA-61-1722 TCGA-61-1730 TCGA-61-1741 
       25.02       180.16       116.12         8.05         4.34        33.67 
TCGA-61-1904 TCGA-61-1911 TCGA-61-1918 TCGA-61-2097 TCGA-61-2098 TCGA-61-2113 
        9.07        42.48        15.75        60.62        65.49        22.22 

$`19Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24         1.81        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1347 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       11.87        63.06        21.57        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       32.52        44.32        33.67        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1530 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       56.55       119.08        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0366 TCGA-09-0369 
       64.64        36.23        47.70        45.34        57.73        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
       97.55         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0934 
       25.91        81.47        18.48        33.24        32.28         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 
       35.41        35.80        15.12        19.86         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 
       39.58         2.73        12.39        31.07        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 
        2.47        11.18        11.38        11.54        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 
       30.35         8.71         7.79         8.12         8.28        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0886 
       35.28        35.28        13.61        68.91       107.18        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       57.47        56.15        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       29.98        21.14        14.89         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1409 TCGA-13-1412 
       10.88         6.61         7.36         6.05         6.84         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1496 
       22.39        70.82        82.88        52.44        38.17         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.21         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       23.05        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
        2.66        47.54        42.51        40.54        15.39        26.83 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       31.73        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       51.35        31.20        68.68        86.01       129.96         4.27 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       39.09        33.47        58.13        24.95       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 
       91.66        77.00         2.76         4.70         4.50         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
       19.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1419 
       54.08        63.55        47.41         6.31         6.38         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1427 TCGA-24-1430 
        0.76         6.25         6.02         5.95         4.80        28.34 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       18.67        43.53        72.92        12.46        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
        9.11         3.42         1.18        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1549 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       64.27        56.58        51.91        58.09        88.50        70.62 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       90.15        88.34        48.33         8.32         3.48         3.72 
TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1924 TCGA-24-1927 
        4.37         5.75         5.49         9.80        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       11.05        81.11         4.87        44.84        58.16        34.82 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       14.43        53.95        28.18        64.01        44.48        57.07 
TCGA-24-2260 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
       36.16         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       53.26         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1322 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       65.00        36.95         2.99        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       35.54        51.22        14.93        24.99        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       45.01        19.99        42.02        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       78.87        44.71       101.75        38.53        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       68.28         0.53        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       29.23        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 
       39.09        31.23        22.98        22.52        17.29        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       12.30        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2431 TCGA-29-2436 
       86.17        65.00        62.47        45.11        42.25         9.76 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       36.26         2.47        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       30.05        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       42.51        44.09        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 
       22.55         8.55        30.05        25.74        24.23        24.69 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       16.14        11.47        14.30         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 
        7.63        11.38        21.14         1.74        28.96        25.05 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       80.12        22.32         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       44.78        11.11        20.94        31.40        18.54        27.88 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       34.13        31.30        37.02        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       43.43        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
        3.98        30.61        39.85        30.64         1.18        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.40         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       58.39        55.50         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
      125.72        51.91        15.88         6.35        31.07         8.58 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.53               0.26 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            180.16             129.96 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            19.775             29.640 
[1] "0.5 - 180.2 (19.8)" "0.3 - 130.0 (29.6)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D35V2, continuous
D35V3, multiclass
                    clus
vv                   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            91                457
  PERITONEUM (OVARY)                1                  1
D35V4, continuous
D35V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      1   91
  19Q GAIN WILD-TYPE    2  458
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 1                  2
  YES               91                458
D35V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     72   20
  19Q GAIN WILD-TYPE  376   84
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                72                376
  YES               20                 84

Clustering(36) Variable = 20p gain mutation analysis
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    99 130
  20P GAIN WILD-TYPE 162 155
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               229                317 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               130                155 
$`20P GAIN MUTATED`
TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
        2.01        46.62        18.51        11.87        65.49        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 
       21.57        63.98        65.46        49.28        44.32        33.67 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1542 TCGA-04-1646 TCGA-04-1649 
       56.55        41.59        19.99        84.20        27.88        64.64 
TCGA-04-1651 TCGA-04-1655 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1665 
       36.23        45.34        35.54         9.96        38.43        41.59 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2044 TCGA-09-2049 TCGA-09-2051 TCGA-09-2053 
        8.55         6.15         6.12       112.37        63.09        39.75 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0935 TCGA-10-0936 TCGA-10-0938 TCGA-13-0720 
       32.28        11.70        35.41        35.80        19.86        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 TCGA-13-0751 TCGA-13-0757 
       39.58         2.73        12.39        15.19        55.17        11.18 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0794 TCGA-13-0800 TCGA-13-0885 
       32.25        31.04        21.40        30.35         8.12        91.40 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0904 TCGA-13-0913 TCGA-13-0920 TCGA-13-0923 
       66.64        70.39        48.33        29.98        13.81         6.41 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 
        6.05         5.92         6.84        87.06        98.04        20.68 
TCGA-13-1488 TCGA-13-1492 TCGA-13-1497 TCGA-13-1499 TCGA-13-1504 TCGA-13-1506 
       70.82        73.55        54.31        38.37        16.57         4.41 
TCGA-13-1507 TCGA-13-2057 TCGA-13-2061 TCGA-20-0990 TCGA-20-0991 TCGA-20-1685 
        4.77        14.24        10.78        25.94        26.20        16.67 
TCGA-20-1686 TCGA-23-1021 TCGA-23-1024 TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 
        2.93        47.54        15.39        29.10         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1114 TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 
       54.51         3.22        68.68         6.38        33.47        58.13 
TCGA-23-1809 TCGA-23-2084 TCGA-23-2643 TCGA-24-0982 TCGA-24-1422 TCGA-24-1423 
        0.53        49.84         4.70        22.32         0.76         6.25 
TCGA-24-1424 TCGA-24-1430 TCGA-24-1431 TCGA-24-1436 TCGA-24-1464 TCGA-24-1469 
        6.02        28.34        19.17         8.55        12.46         9.11 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1551 
       22.19        26.96        57.37        64.27        16.21        51.91 
TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1604 TCGA-24-1616 
       58.09        70.62        39.88        19.53        88.34        38.24 
TCGA-24-1844 TCGA-24-1847 TCGA-24-1850 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
        3.72        11.28         5.49        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2026 TCGA-24-2027 TCGA-24-2033 TCGA-24-2260 TCGA-24-2281 
      151.99        34.82       109.68        18.48        36.16        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-25-1312 
        0.82        67.36        36.23        16.64        33.11         1.02 
TCGA-25-1313 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       26.93         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
       12.00         2.96        18.58        15.78         0.36        20.58 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
       60.59        35.54        51.22        14.93        24.99        18.05 
TCGA-25-1878 TCGA-25-2396 TCGA-25-2400 TCGA-25-2404 TCGA-25-2408 TCGA-29-1688 
       85.05         3.02        42.02        29.00        30.97        78.87 
TCGA-29-1691 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 TCGA-29-1703 TCGA-29-1710 
       47.18         0.79        68.28         0.53        59.67        29.23 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 TCGA-29-1774 
       66.77        62.93        39.09        31.23        24.36        17.29 
TCGA-29-1775 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 TCGA-29-2414 TCGA-29-2425 
       12.36        14.93         7.20         5.36        86.17        65.00 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-30-1714 TCGA-30-1718 TCGA-30-1856 
       45.11         4.87        42.25        38.07        51.91        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 TCGA-30-1891 
        0.26        48.07        34.78         6.08         1.18        30.05 
TCGA-30-1892 TCGA-31-1951 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       48.79        22.45         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1581 TCGA-36-2534 TCGA-36-2547 
       22.85         8.55        30.05        24.69        29.79        20.52 
TCGA-36-2548 TCGA-36-2552 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 
       14.17        11.47         7.63        24.03        11.38         1.74 
TCGA-57-1586 TCGA-57-1993 TCGA-59-2351 TCGA-59-2352 TCGA-59-2363 TCGA-59-2372 
       22.32        25.05       116.12         9.40         5.39        44.78 
TCGA-61-1722 TCGA-61-1730 TCGA-61-1733 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 
        8.05         4.34        31.76        43.69         8.42         5.79 
TCGA-61-1903 TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 
       13.02        42.48        56.58        67.73        15.75        38.17 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2018 TCGA-61-2097 
        3.98        30.61        39.85        30.64        45.40        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2611 TCGA-61-2612 
       65.49        55.50         6.48        76.83        15.88         6.35 
TCGA-61-2614 
        8.58 

$`20P GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1348 TCGA-04-1361 
       40.24        41.00         1.81        49.15        48.76        32.52 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       76.54        71.47        82.36        38.37       119.08        29.06 
TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 
       55.40        48.89        28.64        31.86        47.70        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 
        9.47        57.73        17.95        89.33        74.89        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1675 TCGA-09-2045 TCGA-09-2048 TCGA-09-2050 TCGA-09-2054 TCGA-09-2055 
       97.55        35.15         4.50        71.11        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0934 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0726 TCGA-13-0730 
        3.88        15.12         6.21        24.59        31.07        17.79 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0768 TCGA-13-0791 
        2.47        11.38        11.54        34.06         8.42        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 
       36.72        28.70        19.56         8.71         7.79         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0886 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
      107.18        74.27        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 
       57.47        56.15        57.07        19.36        47.38        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 
       44.94        44.84        37.08        27.68        34.06        21.14 
TCGA-13-0919 TCGA-13-0921 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 
       14.89         4.64         6.08        10.88         6.61         7.36 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 
        4.70         4.21         5.33        54.61        61.71        29.39 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       22.39        82.88        52.44        38.17        49.22         4.24 
TCGA-13-1498 TCGA-13-1500 TCGA-13-1501 TCGA-13-1505 TCGA-13-1509 TCGA-13-1510 
       37.61        13.97        32.84         4.21         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 
        3.88         3.09        12.23         8.58         8.75         6.28 
TCGA-20-0987 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1687 
       23.05        72.20        27.48        25.38        19.07         2.66 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       42.51        40.54        26.83        31.73        49.41         8.81 
TCGA-23-1031 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       18.87        31.20         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1122 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 
        4.27        39.09        24.95       115.89        87.48        91.66 
TCGA-23-2081 TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 
       77.00         2.76         4.50         7.63        19.63        11.64 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       21.80        41.56         7.66        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1425 
        6.31         6.38         7.82         7.99         7.86         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 
        5.36         4.80        17.36        18.67        43.53        72.92 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1549 TCGA-24-1550 
       45.14       105.99         3.42         1.18        56.58        41.06 
TCGA-24-1552 TCGA-24-1555 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       41.39        88.50        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 TCGA-24-1842 TCGA-24-1843 
       10.26        17.23        90.15        48.33         8.32         3.48 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
        3.81         4.37         5.75         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-2023 TCGA-24-2024 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 
       16.41        44.84        58.16        14.43        53.95        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       64.01        44.48        57.07         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2297 TCGA-24-2298 TCGA-25-1314 TCGA-25-1315 
       31.63        70.45        55.86        53.26        31.99        51.06 
TCGA-25-1316 TCGA-25-1322 TCGA-25-1625 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 
       37.02         2.99        18.02         7.86         0.30        56.94 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 
       13.02        49.05         1.02        38.04        12.00        45.01 
TCGA-25-2399 TCGA-25-2401 TCGA-25-2409 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 
       19.99         2.96        26.96        44.71       101.75        38.53 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1701 TCGA-29-1702 TCGA-29-1705 TCGA-29-1707 
       33.70        31.17        16.90        18.64        18.25        41.95 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1769 TCGA-29-1771 TCGA-29-1776 
       34.62        17.00        85.68        22.98        22.52        11.84 
TCGA-29-1777 TCGA-29-1781 TCGA-29-1785 TCGA-29-2427 TCGA-29-2432 TCGA-29-2434 
       12.30         8.35        34.62        62.47        11.84        11.47 
TCGA-29-2436 TCGA-30-1853 TCGA-30-1855 TCGA-30-1860 TCGA-30-1866 TCGA-30-1880 
        9.76        36.26         2.47        44.91        36.62        57.57 
TCGA-30-1887 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1953 TCGA-31-1955 
       24.26        45.57        30.18        18.77         6.71        42.51 
TCGA-31-1956 TCGA-36-1574 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2529 
       44.09        22.55        25.74        27.85        24.23        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       33.01        29.49        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2551 TCGA-42-2582 TCGA-42-2588 
        2.24        20.98        18.31        16.14        14.30         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-57-1584 TCGA-57-1992 TCGA-57-1994 TCGA-59-2348 
        7.56         7.46        21.14        28.96        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 TCGA-61-1721 TCGA-61-1724 
       80.12        22.32        34.39         2.14        11.11        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       31.40        18.54        27.88        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1901 TCGA-61-1904 
       35.80         2.43        33.67         1.41        11.41         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1917 TCGA-61-1995 
       34.13        31.30        37.02        48.92        43.43         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 
        5.52        14.50        17.98         1.18        45.96         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2109 
        4.77        51.72        71.74        61.64        58.39        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2613 
       44.52       125.72        22.22        51.91        31.07 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.26               0.30 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            151.99             180.16 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             28.73              28.18 
[1] "0.3 - 152.0 (28.7)" "0.3 - 180.2 (28.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
[1] "hr=" "1.2"
D36V2, continuous
D36V3, multiclass
                    clus
vv                   20P GAIN MUTATED 20P GAIN WILD-TYPE
  OMENTUM                           2                  0
  OVARY                           230                318
  PERITONEUM (OVARY)                1                  1
D36V4, continuous
D36V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      2  231
  20P GAIN WILD-TYPE    1  318
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 2                  1
  YES              231                318
D36V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED    181   52
  20P GAIN WILD-TYPE  267   52
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO               181                267
  YES               52                 52

Clustering(37) Variable = 20q gain mutation analysis
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED   122 147
  20Q GAIN WILD-TYPE 139 138
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               269                277 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               147                138 
$`20Q GAIN MUTATED`
TCGA-04-1332 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 
       41.00         2.01        46.62        18.51        11.87        65.49 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       63.06        48.76        21.57        63.98        65.46        49.28 
TCGA-04-1364 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       33.67        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1536 TCGA-04-1646 TCGA-04-1649 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 
       29.06        27.88        64.64        31.86        45.34        29.16 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1665 TCGA-09-1669 TCGA-09-1674 TCGA-09-2048 
        9.96        38.43        41.59        30.48         8.55         4.50 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2055 TCGA-10-0931 TCGA-10-0933 TCGA-10-0935 
       63.09        39.75        26.93        32.28        11.70        35.41 
TCGA-10-0936 TCGA-10-0938 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
       35.80        19.86        24.59        39.58         2.73        12.39 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 TCGA-13-0762 TCGA-13-0766 
       15.19        17.79        55.17        11.18        32.25        21.40 
TCGA-13-0791 TCGA-13-0794 TCGA-13-0795 TCGA-13-0800 TCGA-13-0802 TCGA-13-0884 
       38.93        30.35        19.56         8.12         8.19       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0893 TCGA-13-0899 
       91.40        74.27        66.64        70.39        43.36        56.15 
TCGA-13-0901 TCGA-13-0905 TCGA-13-0906 TCGA-13-0911 TCGA-13-0913 TCGA-13-0923 
       19.36        47.84        44.94        27.68        29.98         6.41 
TCGA-13-1403 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1412 
       10.88         6.05         5.92         6.84         4.70         5.33 
TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 TCGA-13-1492 TCGA-13-1498 TCGA-13-1499 
       87.06        98.04        20.68        73.55        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 TCGA-13-2057 
       13.97        32.84        16.57         4.41         4.77        14.24 
TCGA-13-2060 TCGA-20-0990 TCGA-20-0991 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 
        8.58        25.94        26.20        16.67         2.93        47.54 
TCGA-23-1022 TCGA-23-1024 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       42.51        15.39         2.24        51.35        54.51         3.22 
TCGA-23-1114 TCGA-23-1117 TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 
       68.68        33.30         6.38        33.47        58.13         0.53 
TCGA-23-2079 TCGA-23-2084 TCGA-23-2643 TCGA-23-2645 TCGA-24-0975 TCGA-24-0982 
       91.66        49.84         4.70         4.50        21.80        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 TCGA-24-1423 
       54.08        63.55         7.82         7.99         0.76         6.25 
TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        6.02         5.36         4.80        28.34        19.17        18.67 
TCGA-24-1436 TCGA-24-1464 TCGA-24-1469 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
        8.55        12.46         9.11        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1551 TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 
       64.27        16.21        51.91        58.09        70.62        39.88 
TCGA-24-1558 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1844 
       19.53        17.23        90.15        88.34        38.24         3.72 
TCGA-24-1845 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1924 
        3.81        11.28         5.75         5.49         9.80        30.21 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 TCGA-24-2027 
       11.05        81.11         4.87       151.99        34.82       109.68 
TCGA-24-2033 TCGA-24-2260 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2295 
       18.48        36.16        44.58         0.82        67.36        33.11 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
        1.02        26.93        31.99         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 
       36.95        33.96        12.00         2.96        18.58        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 
        0.36        20.58         0.30        60.59        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-2392 TCGA-25-2396 TCGA-25-2400 TCGA-25-2404 
       24.99        18.05         1.02         3.02        42.02        29.00 
TCGA-25-2408 TCGA-29-1688 TCGA-29-1691 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
       30.97        78.87        47.18        68.28         0.53        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 
       18.64        59.67        18.25        41.95        29.23        17.00 
TCGA-29-1763 TCGA-29-1766 TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 TCGA-29-1778 
       66.77        39.09        24.36        17.29        12.36        14.93 
TCGA-29-1783 TCGA-29-1784 TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 
        7.20         5.36        86.17        65.00        45.11         4.87 
TCGA-29-2431 TCGA-30-1714 TCGA-30-1718 TCGA-30-1856 TCGA-30-1859 TCGA-30-1861 
       42.25        38.07        51.91        15.68        48.07        34.78 
TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1959 
        6.08         1.18        24.26        48.79        45.57         2.17 
TCGA-36-1569 TCGA-36-1571 TCGA-36-1576 TCGA-36-1578 TCGA-36-1581 TCGA-36-2534 
       29.06        22.85        30.05        27.85        24.69        29.79 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2591 TCGA-57-1582 
       20.52        14.17        16.14        11.47         7.63        24.03 
TCGA-57-1583 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
       11.38        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2372 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
      116.12         9.40        44.78         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1741 TCGA-61-1743 
       18.54        27.88         4.34        31.76        33.67        43.69 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1911 
        8.42         5.79        13.02        34.13        31.30        42.48 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-2003 TCGA-61-2008 
       56.58        67.73        43.43        15.75         3.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2018 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       39.85        30.64        45.40        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2611 TCGA-61-2612 TCGA-61-2614 
        6.48        76.83        15.88         6.35         8.58 

$`20Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 
       40.24         1.81        49.15        32.52        44.32        76.54 
TCGA-04-1367 TCGA-04-1530 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
       71.47       119.08        84.20        55.40        48.89        28.64 
TCGA-04-1651 TCGA-04-1654 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       36.23        47.70         9.47        57.73        17.95        35.54 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 
       89.33        74.89        57.57        61.87        55.36        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        5.85         3.02        97.55         6.15         6.12        35.15 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2054 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
      112.37        71.11        20.91        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0934 TCGA-10-0937 TCGA-13-0714 
       81.47        18.48        33.24         3.88        15.12         6.21 
TCGA-13-0720 TCGA-13-0726 TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       44.55        31.07         2.47        11.38        11.54        34.06 
TCGA-13-0764 TCGA-13-0768 TCGA-13-0792 TCGA-13-0793 TCGA-13-0797 TCGA-13-0799 
       31.04         8.42        36.72        28.70         8.71         7.79 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.28        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0900 TCGA-13-0903 
       61.81        67.99        69.01        57.47        57.07        47.38 
TCGA-13-0904 TCGA-13-0908 TCGA-13-0910 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 
       48.33        44.84        37.08        34.06        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0924 TCGA-13-1404 TCGA-13-1405 TCGA-13-1411 
       13.81         4.64         6.08         6.61         7.36         4.21 
TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       54.61        61.71        29.39        22.39        70.82        82.88 
TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1505 
       52.44        38.17        49.22         4.24        54.31         4.21 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 
        4.14         2.56         3.88         3.09        12.23        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
        8.75         6.28        23.05        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1687 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       19.07         2.66        40.54        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1113 TCGA-23-1116 TCGA-23-1118 
        8.81        29.10        18.87        31.20         4.57        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
      129.96         4.27        39.09        24.95       115.89        87.48 
TCGA-23-2081 TCGA-23-2641 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0979 
       77.00         2.76         7.63        19.63        11.64        41.56 
TCGA-24-0980 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1419 TCGA-24-1425 
        7.66        47.41         6.31         6.38         7.86         5.95 
TCGA-24-1428 TCGA-24-1435 TCGA-24-1463 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 
       17.36        43.53        72.92        45.14       105.99         3.42 
TCGA-24-1471 TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 TCGA-24-1555 TCGA-24-1560 
        1.18        56.58        41.06        41.39        88.50        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1614 TCGA-24-1842 
       45.50        47.70        25.87        10.26        48.33         8.32 
TCGA-24-1843 TCGA-24-1846 TCGA-24-1923 TCGA-24-1927 TCGA-24-2023 TCGA-24-2024 
        3.48         4.37        22.65        16.41        44.84        58.16 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       14.43        53.95        28.18        64.01        44.48        57.07 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2290 
        0.79         0.36        47.54        31.63        70.45        36.23 
TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1315 TCGA-25-1316 TCGA-25-1322 
       16.64        55.86        53.26        51.06        37.02         2.99 
TCGA-25-1625 TCGA-25-1630 TCGA-25-1632 TCGA-25-1634 TCGA-25-1878 TCGA-25-2042 
       18.02         7.86        56.94        35.54        85.05        13.02 
TCGA-25-2391 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 
       49.05        38.04        12.00        45.01        19.99         2.96 
TCGA-25-2409 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       26.96        44.71       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 
       31.17        34.62        85.68        62.93        31.23        22.98 
TCGA-29-1771 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1785 TCGA-29-2427 
       22.52        11.84        12.30         8.35        34.62        62.47 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 
       11.84        11.47         9.76        36.26         2.47         0.26 
TCGA-30-1860 TCGA-30-1866 TCGA-30-1880 TCGA-30-1891 TCGA-31-1946 TCGA-31-1950 
       44.91        36.62        57.57        30.05        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1570 
       22.45         6.71        42.51        44.09        28.73        21.53 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1577 TCGA-36-1580 TCGA-36-2529 TCGA-36-2530 
       22.55         8.55        25.74        24.23        35.05        33.01 
TCGA-36-2532 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.49        25.91        25.08        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       20.98        18.31        14.30         9.44         7.56         7.46 
TCGA-57-1584 TCGA-57-1585 TCGA-59-2349 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 
       21.14         1.74        80.12        22.32        34.39         2.14 
TCGA-59-2363 TCGA-61-1721 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        5.39        11.11        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1895 TCGA-61-1901 TCGA-61-1904 TCGA-61-1910 TCGA-61-1913 
        2.43         1.41        11.41         9.07        37.02        48.92 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2016 
       38.17         1.97         5.52        14.50        17.98         1.18 
TCGA-61-2017 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.96         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       58.39        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2613 
       31.07 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.30               0.26 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            180.16             129.96 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             27.68              29.10 
[1] "0.3 - 180.2 (27.7)" "0.3 - 130.0 (29.1)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
[1] "hr=" "1.2"
D37V2, continuous
D37V3, multiclass
                    clus
vv                   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           272                276
  PERITONEUM (OVARY)                1                  1
D37V4, continuous
D37V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      2  271
  20Q GAIN WILD-TYPE    1  278
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 2                  1
  YES              271                278
D37V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED    217   56
  20Q GAIN WILD-TYPE  231   48
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO               217                231
  YES               56                 48

Clustering(38) Variable = 21q gain mutation analysis
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    39  38
  21Q GAIN WILD-TYPE 222 247
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                77                469 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                38                247 
$`21Q GAIN MUTATED`
TCGA-04-1332 TCGA-04-1342 TCGA-04-1343 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       41.00        18.51        11.87        82.36        56.55        41.59 
TCGA-09-0365 TCGA-09-1670 TCGA-09-2043 TCGA-10-0936 TCGA-13-0724 TCGA-13-0726 
        9.47        17.98         6.15        35.80         2.73        31.07 
TCGA-13-0762 TCGA-13-0795 TCGA-13-0904 TCGA-13-0905 TCGA-13-1408 TCGA-13-1410 
       32.25        19.56        48.33        47.84         5.92         4.70 
TCGA-13-1496 TCGA-13-1500 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-2059 
        4.24        13.97        16.57         4.21         4.41        12.23 
TCGA-20-0990 TCGA-20-0991 TCGA-23-1116 TCGA-23-1123 TCGA-23-2079 TCGA-23-2084 
       25.94        26.20         4.57        33.47        91.66        49.84 
TCGA-23-2643 TCGA-24-0979 TCGA-24-1423 TCGA-24-1424 TCGA-24-1436 TCGA-24-1552 
        4.70        41.56         6.25         6.02         8.55        41.39 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1847 TCGA-24-2019 TCGA-24-2260 TCGA-24-2295 
        8.32         3.48        11.28         4.87        36.16        33.11 
TCGA-25-1312 TCGA-25-1319 TCGA-25-1323 TCGA-25-1329 TCGA-25-1628 TCGA-25-1877 
        1.02        65.00        12.00         2.96        20.58        18.05 
TCGA-25-2393 TCGA-25-2401 TCGA-29-1701 TCGA-29-1707 TCGA-29-1762 TCGA-29-1764 
       38.04         2.96        16.90        41.95        85.68        62.93 
TCGA-29-1778 TCGA-29-2428 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 TCGA-31-1944 
       14.93        45.11        34.78         6.08         1.18        45.57 
TCGA-31-1959 TCGA-36-1571 TCGA-36-1578 TCGA-36-2542 TCGA-36-2547 TCGA-36-2551 
        2.17        22.85        27.85        21.60        20.52        16.14 
TCGA-57-1582 TCGA-57-1585 TCGA-57-1992 TCGA-61-1906 TCGA-61-1914 TCGA-61-1915 
       24.03         1.74        28.96        34.13        56.58        67.73 
TCGA-61-2097 TCGA-61-2101 TCGA-61-2102 TCGA-61-2612 TCGA-61-2614 
       60.62        55.50         6.48         6.35         8.58 

$`21Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1346 
       40.24         1.81        49.15         2.01        46.62        65.49 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 
       63.06        48.76        21.57        63.98        65.46        49.28 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1517 
       32.52        44.32        33.67        76.54        71.47        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       38.37       119.08        29.06        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       27.88        28.64        64.64        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       45.34        29.16        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       55.36        30.48         5.85         3.02         8.55        97.55 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.41        15.12        19.86         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       39.58        12.39        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 
       11.18        11.38        11.54        34.06        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 
        8.42        38.93        36.72        28.70        30.35         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0906 
       57.47        56.15        57.07        19.36        47.38        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       14.89        13.81         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 
        6.61         7.36         6.05         6.84         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       22.39        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1501 TCGA-13-1507 
       49.22        54.31        37.61        38.37        32.84         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 
        4.14         2.56         3.88         3.09        14.24         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0996 TCGA-20-1682 
       10.78         8.75         6.28        23.05        72.20        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       25.38        19.07        16.67         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 
       42.51        40.54        15.39        26.83        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
        3.22        31.20        68.68        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        4.27         6.38        39.09        58.13         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 
      115.89        87.48        77.00         2.76         4.50         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       19.63        11.64        21.80         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        7.86         0.76         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 
       28.34        19.17        18.67        43.53        72.92        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       51.91        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1844 TCGA-24-1845 
       90.15        88.34        48.33        38.24         3.72         3.81 
TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
        4.37         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       16.41        11.05        81.11       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       64.01        44.48        57.07         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
       31.63        70.45        44.58         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       16.64        55.86        53.26        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
       37.02         1.02        34.98        36.95        33.96         2.99 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 
       18.58        18.02        15.78         0.36         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 
       85.05        13.02        49.05         1.02         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       45.01        19.99        42.02        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1702 TCGA-29-1703 
       33.70        31.17        68.28         0.53        18.64        59.67 
TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 
       18.25        29.23        34.62        17.00        66.77        39.09 
TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       31.23        22.98        24.36        22.52        17.29        12.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       11.84        12.30         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       86.17        65.00        62.47         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
       11.47         9.76        38.07        51.91        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1866 TCGA-30-1880 
       15.68         0.26        48.07        44.91        36.62        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       24.26        30.05        48.79        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
        6.71        42.51        44.09        28.73        29.06        21.53 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 
       22.55         8.55        30.05        25.74        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2552 
       23.80         2.24        20.98        18.31        14.17        11.47 
TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 
       14.30         9.44         7.56         7.46         7.63        11.38 
TCGA-57-1584 TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       21.14        22.32        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 TCGA-61-1910 
        5.79        11.41        13.02         9.07        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       42.48        48.92        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.64         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2104 
       51.72        71.74        61.64        58.39        65.49        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       20.68        44.52       125.72        22.22        51.91        15.88 
TCGA-61-2613 
       31.07 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              1.02               0.26 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             91.66             180.16 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             19.56              29.16 
[1] "1.0 - 91.7 (19.6)"  "0.3 - 180.2 (29.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
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  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
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  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
[1] "hr=" "1.3"
D38V2, continuous
D38V3, multiclass
                    clus
vv                   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            77                471
  PERITONEUM (OVARY)                0                  2
D38V4, continuous
D38V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      0   77
  21Q GAIN WILD-TYPE    3  472
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 0                  3
  YES               77                472
D38V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED     62   15
  21Q GAIN WILD-TYPE  386   89
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                62                386
  YES               15                 89

Clustering(39) Variable = 22q gain mutation analysis
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED     5   8
  22Q GAIN WILD-TYPE 256 277
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                13                533 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 8                277 
$`22Q GAIN MUTATED`
TCGA-13-0760 TCGA-13-0762 TCGA-13-1488 TCGA-23-2077 TCGA-24-1928 TCGA-25-1329 
       11.54        32.25        70.82       115.89        11.05         2.96 
TCGA-25-1627 TCGA-29-1768 TCGA-29-1770 TCGA-30-1861 TCGA-57-1585 TCGA-61-1727 
        0.36        31.23        24.36        34.78         1.74        18.54 
TCGA-61-1904 
        9.07 

$`22Q GAIN WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       38.37       119.08        29.06        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       27.88        28.64        64.64        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       45.34        29.16         9.47        57.73        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        8.55        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
      112.37        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       12.46        54.31        25.91        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.18        11.38        34.06        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       57.47        56.15        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       29.98        21.14        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1489 
       61.71        29.39        98.04        20.68        22.39        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       52.44        73.55        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
       19.07        16.67         2.93         2.66        47.54        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       29.10        18.87         2.24        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       31.20        68.68         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 
        4.27         6.38        39.09        33.47        58.13         0.53 
TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
       24.95        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
       12.46        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
       22.19        26.96        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       39.88        19.53        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       10.26        17.23        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
        8.32         3.48         3.72         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       81.11         4.87       151.99        44.84        58.16        34.82 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
      109.68        14.43        53.95        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       44.48        57.07        36.16         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
       31.63        70.45        44.58         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       16.64        33.11        55.86        53.26         1.02        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 
       36.95        33.96         2.99        12.00        18.58        18.02 
TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
       15.78        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       35.54        51.22        14.93        24.99        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 
       26.96        78.87        44.71        47.18       101.75        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
        0.79        33.70        31.17        68.28         0.53        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       18.64        59.67        18.25        41.95        29.23        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 
       17.00        85.68        66.77        62.93        39.09        22.98 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
        9.76        38.07        51.91        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
        0.26        48.07        44.91         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       28.73        29.06        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       30.05        25.74        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       16.14        11.47        14.30         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1586 TCGA-57-1992 
        7.63        24.03        11.38        21.14        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       25.05        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 
        8.05        20.94        31.40        27.88         4.34        31.76 
TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       28.47        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       51.91        15.88         6.35        31.07         8.58 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.36               0.26 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            115.89             180.16 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             18.54              28.64 
[1] "0.4 - 115.9 (18.5)" "0.3 - 180.2 (28.6)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
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        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D39V2, continuous
D39V3, multiclass
                    clus
vv                   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            13                535
  PERITONEUM (OVARY)                0                  2
D39V4, continuous
D39V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      0   13
  22Q GAIN WILD-TYPE    3  536
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 0                  3
  YES               13                536
D39V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      9    4
  22Q GAIN WILD-TYPE  439  100
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 9                439
  YES                4                100

Clustering(40) Variable = 1p loss mutation analysis
D40V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    17  22
  1P LOSS WILD-TYPE 244 263
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               39               507 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               22               263 
$`1P LOSS MUTATED`
TCGA-04-1351 TCGA-04-1362 TCGA-04-1542 TCGA-04-1638 TCGA-09-1672 TCGA-10-0928 
       65.46        44.32        84.20        55.40         5.85        18.48 
TCGA-10-0935 TCGA-13-0801 TCGA-13-0900 TCGA-13-0905 TCGA-13-1409 TCGA-13-1477 
       35.41         8.28        57.07        47.84         6.84        54.61 
TCGA-13-1492 TCGA-13-1510 TCGA-20-1687 TCGA-23-1022 TCGA-23-1028 TCGA-23-2643 
       73.55         2.56         2.66        42.51        49.41         4.70 
TCGA-23-2645 TCGA-24-1103 TCGA-24-1423 TCGA-24-1424 TCGA-24-1430 TCGA-24-1850 
        4.50        54.08         6.25         6.02        28.34         5.49 
TCGA-24-2020 TCGA-24-2024 TCGA-25-1316 TCGA-25-2396 TCGA-25-2408 TCGA-29-1690 
      151.99        58.16        37.02         3.02        30.97        44.71 
TCGA-29-1768 TCGA-29-2414 TCGA-30-1853 TCGA-30-1859 TCGA-30-1860 TCGA-36-1580 
       31.23        86.17        36.26        48.07        44.91        24.23 
TCGA-36-2540 TCGA-61-2012 TCGA-61-2101 
       23.80        30.64        55.50 

$`1P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       63.98        49.28        32.52        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 
       29.06        48.89        27.88        28.64        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 
       31.86        47.70        45.34        29.16         9.47        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
       17.95        35.54         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       41.59        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        3.02         8.55        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        4.50       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 
       26.93        12.46        54.31        25.91        81.47        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       32.28        11.70         3.88        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       31.07        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       11.38        11.54        34.06        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        8.71         7.79         8.12         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       66.64        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 
       57.47        56.15        19.36        47.38        48.33        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 
       44.84        37.08        27.68        34.06        29.98        21.14 
TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       14.89        13.81         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 
        6.61         7.36         6.05         5.92         4.70         4.21 
TCGA-13-1412 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
        5.33        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 
       22.39        70.82        82.88        52.44        38.17        49.22 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
        4.24        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 
       16.57         4.21         4.41         4.77         4.14         3.88 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 
        3.09        14.24        12.23         8.58        10.78         8.75 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        6.28        23.05        25.94        26.20        72.20        27.48 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 TCGA-23-1023 
       25.38        19.07        16.67         2.93        47.54        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       15.39        26.83        31.73         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 
        2.24        51.35        54.51         3.22        31.20        68.68 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        4.57        33.30        86.01       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 
       39.09        33.47        58.13         0.53        24.95       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-24-0966 
       87.48        91.66        77.00        49.84         2.76         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
       19.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        7.86         0.76         5.95         5.36         4.80        17.36 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       19.17        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       17.23        90.15        88.34        48.33        38.24         8.32 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
        3.48         3.72         3.81         4.37        11.28         5.75 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2023 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
        4.87        44.84        34.82       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1317 
       53.26         1.02        26.93        31.99        51.06         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
        7.86         0.30        56.94        60.59        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       14.93        24.99        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
        1.02        38.04        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 TCGA-29-1688 TCGA-29-1691 TCGA-29-1693 
        2.96        29.00        26.96        78.87        47.18       101.75 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       38.53         0.79        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 
       34.62        17.00        85.68        66.77        62.93        39.09 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 
       22.98        24.36        22.52        17.29        12.36        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       12.30        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       65.00        62.47        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 
       11.47         9.76        38.07        51.91         2.47        15.68 
TCGA-30-1857 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
        0.26        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       29.06        21.53        22.85        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
       25.74        27.85        24.69        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       29.79        25.91        25.08        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       18.31        20.52        14.17        16.14        11.47        14.30 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       21.14         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       31.40        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        1.41         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 
       14.50        17.98         3.98        30.61        39.85         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 TCGA-61-2104 
       61.64        58.39        60.62        65.49         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       20.68        44.52       125.72        22.22        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             2.56              0.26 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           151.99            180.16 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            36.26             27.68 
[1] "2.6 - 152.0 (36.3)" "0.3 - 180.2 (27.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D40V2, continuous
D40V3, multiclass
                    clus
vv                   1P LOSS MUTATED 1P LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           40               508
  PERITONEUM (OVARY)               0                 2
D40V4, continuous
D40V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      1   39
  1P LOSS WILD-TYPE    2  510
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                1                 2
  YES              39               510
D40V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     31    9
  1P LOSS WILD-TYPE  417   95
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO               31               417
  YES               9                95

Clustering(41) Variable = 1q loss mutation analysis
D41V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED    11  12
  1Q LOSS WILD-TYPE 250 273
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               23               523 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               12               273 
$`1Q LOSS MUTATED`
TCGA-04-1351 TCGA-04-1362 TCGA-10-0928 TCGA-13-0792 TCGA-13-0893 TCGA-13-0900 
       65.46        44.32        18.48        36.72        43.36        57.07 
TCGA-13-0905 TCGA-13-1477 TCGA-13-1492 TCGA-20-1687 TCGA-23-1022 TCGA-23-1109 
       47.84        54.61        73.55         2.66        42.51        51.35 
TCGA-23-2645 TCGA-24-1103 TCGA-24-1424 TCGA-24-1850 TCGA-25-1632 TCGA-29-1768 
        4.50        54.08         6.02         5.49        56.94        31.23 
TCGA-30-1860 TCGA-36-1580 TCGA-36-2540 TCGA-61-1901 TCGA-61-2012 
       44.91        24.23        23.80        11.41        30.64 

$`1Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       63.98        49.28        32.52        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       30.48        17.98         5.85         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        6.15         6.12        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       63.09        39.75        20.91        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       25.91        81.47        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       35.41        35.80        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       44.55        39.58         2.73        12.39        31.07        15.19 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       17.79        55.17         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0901 
       61.81        67.99        69.01        57.47        56.15        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       34.06        29.98        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 
        5.92         6.84         4.70         4.21         5.33        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 
       19.07        16.67         2.93        47.54        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
        2.24        54.51         3.22        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 
       33.30        86.01       129.96         4.27         6.38        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       33.47        58.13         0.53        24.95       115.89        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-24-0966 
       91.66        77.00        49.84         2.76         4.70         7.63 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 
       19.63        11.64        21.80        41.56         7.66        22.32 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        7.86         0.76         6.25         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
       17.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 
        1.18        22.19        26.96        57.37        64.27        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 
       56.58        41.06        51.91        41.39        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       70.62        39.88        19.53        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       25.87        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       38.24         8.32         3.48         3.72         3.81         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
       11.28         5.75         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       64.01        44.48        57.07        36.16         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       65.00        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
        0.30        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       18.05        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       29.23        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       39.09        22.98        24.36        22.52        17.29        12.36 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 
       11.84        12.30        14.93         8.35         7.20         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1861 
       36.26         2.47        15.68         0.26        48.07        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       22.85        22.55         8.55        30.05        25.74        27.85 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       25.08        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
       14.17        16.14        11.47        14.30         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.46         7.63        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        5.79        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       42.48        48.92        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       30.61        39.85         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.77        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       65.49        55.50         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
      125.72        22.22        51.91        15.88         6.35        31.07 
TCGA-61-2614 
        8.58 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             2.66              0.26 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            73.55            180.16 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            42.51             27.88 
[1] "2.7 - 73.5 (42.5)"  "0.3 - 180.2 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
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"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D41V2, continuous
D41V3, multiclass
                    clus
vv                   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           25               523
  PERITONEUM (OVARY)               0                 2
D41V4, continuous
D41V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      1   24
  1Q LOSS WILD-TYPE    2  525
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                1                 2
  YES              24               525
D41V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED     17    8
  1Q LOSS WILD-TYPE  431   96
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO               17               431
  YES               8                96

Clustering(42) Variable = 2p loss mutation analysis
D42V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED    12  15
  2P LOSS WILD-TYPE 249 270
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               27               519 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               15               270 
$`2P LOSS MUTATED`
TCGA-04-1362 TCGA-04-1517 TCGA-09-1673 TCGA-10-0938 TCGA-13-0723 TCGA-13-0891 
       44.32        19.99         3.02        19.86        39.58        69.01 
TCGA-13-0904 TCGA-13-0916 TCGA-13-1494 TCGA-20-1682 TCGA-24-1464 TCGA-24-1614 
       48.33        21.14        38.17        27.48        12.46        48.33 
TCGA-24-1930 TCGA-24-2020 TCGA-24-2260 TCGA-25-1313 TCGA-29-1688 TCGA-29-1693 
       81.11       151.99        36.16        26.93        78.87       101.75 
TCGA-29-1763 TCGA-30-1887 TCGA-36-1581 TCGA-36-2543 TCGA-61-1727 TCGA-61-1743 
       66.77        24.26        24.69         2.24        18.54        43.69 
TCGA-61-1895 TCGA-61-2016 TCGA-61-2087 
        1.41         1.18         4.80 

$`2P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 
       63.98        65.46        49.28        32.52        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 
       71.47        82.36        56.55        41.59        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       30.48        17.98         5.85         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.41        35.80        15.12         6.21        24.59        44.55 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 
        2.73        12.39        31.07        15.19        17.79        55.17 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 
        2.47        11.18        11.38        11.54        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       30.35        19.56         8.71         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.19        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 
      107.18        91.40        74.27        66.64        70.39        61.81 
TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       67.99        43.36        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       34.06        29.98        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        73.55        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 
       23.05        25.94        26.20        72.20        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       15.39        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       18.87         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        6.38        39.09        33.47        58.13         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
      115.89        87.48        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        6.25         6.02         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 
       28.34        19.17        18.67        43.53         8.55        72.92 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       17.23        90.15        88.34        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 
        9.80        22.65        30.21        16.41        11.05         4.87 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 
       18.48        28.18        64.01        44.48        57.07         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
        1.02        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       65.00        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 
        2.96        29.00        30.97        26.96        44.71        47.18 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       38.53         0.79        33.70        31.17        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       16.90        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       34.62        17.00        85.68        62.93        39.09        31.23 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 
       22.98        24.36        22.52        17.29        12.36        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       12.30        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
       86.17        65.00        62.47        45.11         4.87        42.25 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       11.84        11.47         9.76        38.07        51.91        36.26 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
        2.47        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 
        6.08        36.62         1.18        57.57        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.55         8.55        30.05        25.74        27.85        24.23 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       23.80        21.60        20.98        18.31        20.52        14.17 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       16.14        11.47        14.30         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.63        24.03        11.38        21.14         1.74        22.32 
TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       28.96        25.05        25.02       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 
       11.11         8.05        20.94        31.40        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1741 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
       33.67         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.96        45.40         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       58.39        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       20.68        44.52       125.72        22.22        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             1.18              0.26 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           151.99            180.16 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            27.48             28.47 
[1] "1.2 - 152.0 (27.5)" "0.3 - 180.2 (28.5)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D42V2, continuous
D42V3, multiclass
                    clus
vv                   2P LOSS MUTATED 2P LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           27               521
  PERITONEUM (OVARY)               0                 2
D42V4, continuous
D42V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      0   27
  2P LOSS WILD-TYPE    3  522
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                0                 3
  YES              27               522
D42V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED     23    4
  2P LOSS WILD-TYPE  425  100
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO               23               425
  YES               4               100

Clustering(43) Variable = 2q loss mutation analysis
D43V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED    13  16
  2Q LOSS WILD-TYPE 248 269
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               29               517 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               16               269 
$`2Q LOSS MUTATED`
TCGA-04-1349 TCGA-04-1517 TCGA-09-1673 TCGA-10-0934 TCGA-10-0938 TCGA-13-0723 
       21.57        19.99         3.02         3.88        19.86        39.58 
TCGA-13-0891 TCGA-13-0916 TCGA-13-1494 TCGA-20-1682 TCGA-23-2641 TCGA-24-1464 
       69.01        21.14        38.17        27.48         2.76        12.46 
TCGA-24-1614 TCGA-24-1930 TCGA-24-2020 TCGA-24-2260 TCGA-25-1635 TCGA-29-1688 
       48.33        81.11       151.99        36.16        51.22        78.87 
TCGA-29-1693 TCGA-29-1763 TCGA-29-1770 TCGA-30-1853 TCGA-30-1887 TCGA-36-1575 
      101.75        66.77        24.36        36.26        24.26         8.55 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2543 TCGA-61-2016 TCGA-61-2087 
       24.69        35.05         2.24         1.18         4.80 

$`2Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1350 
       18.51        11.87        65.49        63.06        48.76        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 
       71.47        82.36        56.55        41.59        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       89.33        74.89        41.59        57.57        61.87        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       30.48        17.98         5.85         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0935 
       81.47        18.48        33.24        32.28        11.70        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 
       35.80        15.12         6.21        24.59        44.55         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       11.18        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       19.56         8.71         7.79         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
       43.82        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       43.36        57.47        56.15        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       48.33        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       34.06        29.98        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       61.71        29.39        98.04        20.68        22.39        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        73.55        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 
       23.05        25.94        26.20        72.20        25.38        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 
       16.67         2.93         2.66        47.54        42.51        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       15.39        26.83        31.73        49.41         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       18.87         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 
       68.68         4.57        33.30        86.01       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        6.38        39.09        33.47        58.13         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2643 
      115.89        87.48        91.66        77.00        49.84         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        6.02         5.95         5.36         4.80        17.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1466 
       19.17        18.67        43.53         8.55        72.92        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       41.39        58.09        88.50        70.62        39.88        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       44.09        45.50        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       90.15        88.34        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.81         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2023 
       22.65        30.21        16.41        11.05         4.87        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       58.16        34.82       109.68        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 TCGA-24-2262 
       28.18        64.01        44.48        57.07         0.79         0.36 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
       47.54        31.63        70.45        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
       26.93        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       65.00        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 
        0.30        56.94        60.59        35.54        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       18.05        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 
       29.00        30.97        26.96        44.71        47.18        38.53 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 
        0.79        33.70        31.17        68.28         0.53        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       18.64        59.67        18.25        41.95        29.23        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       17.00        85.68        62.93        39.09        31.23        22.98 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 
        9.76        38.07        51.91         2.47        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       57.57        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       22.45         6.71        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 
       29.06        21.53        22.85        22.55        30.05        25.74 
TCGA-36-1578 TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       27.85        24.23        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       25.08        23.80        21.60        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 
       14.17        16.14        11.47        14.30         9.44         7.56 
TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        7.46         7.63        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 
       22.32       116.12         9.40        34.39         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 
       44.78        11.11         8.05        20.94        31.40        18.54 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       37.02        42.48        48.92        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       15.75        38.17         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2017 TCGA-61-2018 
        3.98        30.61        39.85        30.64        45.96        45.40 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.77        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       65.49        55.50         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
      125.72        22.22        51.91        15.88         6.35        31.07 
TCGA-61-2614 
        8.58 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             1.18              0.26 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           151.99            180.16 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            24.69             28.64 
[1] "1.2 - 152.0 (24.7)" "0.3 - 180.2 (28.6)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D43V2, continuous
D43V3, multiclass
                    clus
vv                   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           28               520
  PERITONEUM (OVARY)               1                 1
D43V4, continuous
D43V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      0   29
  2Q LOSS WILD-TYPE    3  520
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                0                 3
  YES              29               520
D43V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED     21    8
  2Q LOSS WILD-TYPE  427   96
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO               21               427
  YES               8                96

Clustering(44) Variable = 3p loss mutation analysis
D44V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED    41  35
  3P LOSS WILD-TYPE 220 250
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               76               470 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               35               250 
$`3P LOSS MUTATED`
TCGA-04-1336 TCGA-04-1346 TCGA-04-1347 TCGA-04-1351 TCGA-04-1356 TCGA-04-1365 
       49.15        65.49        63.06        65.46        49.28        76.54 
TCGA-04-1514 TCGA-04-1536 TCGA-09-0369 TCGA-09-1670 TCGA-09-2049 TCGA-09-2050 
       56.55        29.06        35.54        17.98       112.37        71.11 
TCGA-09-2053 TCGA-09-2054 TCGA-10-0928 TCGA-10-0938 TCGA-13-0730 TCGA-13-0757 
       39.75        20.91        18.48        19.86        17.79        11.18 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0890 TCGA-13-0905 TCGA-13-0906 TCGA-13-1409 
       38.93        36.72        67.99        47.84        44.94         6.84 
TCGA-13-1487 TCGA-13-1492 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 
       22.39        73.55         3.09        14.24         8.58        10.78 
TCGA-23-1024 TCGA-23-1114 TCGA-24-0968 TCGA-24-0970 TCGA-24-1417 TCGA-24-1422 
       15.39        68.68        19.63        11.64         7.82         0.76 
TCGA-24-1464 TCGA-24-1548 TCGA-24-1567 TCGA-24-1843 TCGA-24-1845 TCGA-24-1846 
       12.46        16.21        17.23         3.48         3.81         4.37 
TCGA-24-1850 TCGA-24-1930 TCGA-24-2027 TCGA-24-2262 TCGA-24-2288 TCGA-24-2298 
        5.49        81.11       109.68         0.36         0.82        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1633 TCGA-25-1870 TCGA-29-1693 TCGA-29-1695 
        1.02        26.93        60.59        14.93       101.75         0.79 
TCGA-29-1698 TCGA-29-1710 TCGA-29-1763 TCGA-29-1764 TCGA-29-1777 TCGA-29-2427 
       68.28        29.23        66.77        62.93        12.30        62.47 
TCGA-30-1855 TCGA-36-1575 TCGA-36-2530 TCGA-36-2534 TCGA-42-2589 TCGA-57-1992 
        2.47         8.55        33.01        29.79         7.56        28.96 
TCGA-59-2363 TCGA-61-1724 TCGA-61-1727 TCGA-61-1917 TCGA-61-1919 TCGA-61-2002 
        5.39        20.94        18.54        43.43        38.17        17.98 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2109 TCGA-61-2113 
       30.64         1.18        20.68        22.22 

$`3P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 TCGA-04-1362 
       11.87        48.76        21.57        63.98        32.52        44.32 
TCGA-04-1364 TCGA-04-1367 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       33.67        71.47        82.36        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
      119.08        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
        9.47        57.73        17.95         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2051 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       35.15         4.50        63.09        26.93        12.46        54.31 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       25.91        81.47        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.41        35.80        15.12         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0751 
       39.58         2.73        12.39        31.07        15.19        55.17 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
        2.47        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       21.40         8.42        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        13.61        68.91       107.18        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       66.64        70.39        61.81        69.01        43.36        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0908 
       56.15        57.07        19.36        47.38        48.33        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       13.81         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 
        7.36         6.05         5.92         4.70         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       70.82        82.88        52.44        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
        4.21         4.41         4.77         4.14         2.56         3.88 
TCGA-13-2059 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       12.23         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       72.20        27.48        25.38        19.07        16.67         2.93 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 
        2.66        47.54        42.51        40.54        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       54.51         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
      129.96         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0975 
       49.84         2.76         4.70         4.50         7.63        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
       41.56         7.66        22.32        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 TCGA-24-1419 TCGA-24-1423 TCGA-24-1424 
        6.31         6.38         7.99         7.86         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        5.95         5.36         4.80        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1466 TCGA-24-1467 
       18.67        43.53         8.55        72.92        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
        9.11         3.42         1.18        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 
       64.27        56.58        41.06        51.91        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       47.70        25.87        10.26        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 
       38.24         8.32         3.72        11.28         5.75         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2020 
       22.65        30.21        16.41        11.05         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
       44.84        58.16        34.82        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       28.18        64.01        44.48        57.07        36.16         0.79 
TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 TCGA-24-2290 
       47.54        31.63        70.45        44.58        67.36        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       16.64        33.11        55.86        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
        1.02        34.98        65.00        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 TCGA-25-1635 
       20.58         7.86         0.30        56.94        35.54        51.22 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 
       38.04         3.02        12.00        45.01        19.99        42.02 
TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 
        2.96        29.00        30.97        26.96        78.87        44.71 
TCGA-29-1691 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 
       47.18        38.53        33.70        31.17         0.53        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 TCGA-29-1761 
       18.64        59.67        18.25        41.95        34.62        17.00 
TCGA-29-1762 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       85.68        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       17.29        12.36        11.84        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 
        5.36        34.62        86.17        65.00        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 
       36.26        15.68         0.26        48.07        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.85        22.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2532 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       24.69        35.05        29.49        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 
       16.14        11.47        14.30         9.44         7.46         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 
       24.03        11.38        21.14         1.74        22.32        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 
       34.39         2.14        44.78        11.11         8.05        31.40 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 
       37.02        42.48        48.92        56.58        67.73        15.75 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        1.97         5.52        14.50         3.98        30.61        39.85 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2110 TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       76.83        44.52       125.72        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.36              0.26 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           112.37            180.16 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           21.580            28.715 
[1] "0.4 - 112.4 (21.6)" "0.3 - 180.2 (28.7)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D44V2, continuous
D44V3, multiclass
                    clus
vv                   3P LOSS MUTATED 3P LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           78               470
  PERITONEUM (OVARY)               0                 2
D44V4, continuous
D44V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      1   77
  3P LOSS WILD-TYPE    2  472
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO                1                 2
  YES              77               472
D44V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     58   20
  3P LOSS WILD-TYPE  390   84
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO               58               390
  YES              20                84

Clustering(45) Variable = 3q loss mutation analysis
D45V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    13   9
  3Q LOSS WILD-TYPE 248 276
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               22               524 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                9               276 
$`3Q LOSS MUTATED`
TCGA-04-1351 TCGA-04-1514 TCGA-04-1651 TCGA-09-2050 TCGA-10-0928 TCGA-10-0938 
       65.46        56.55        36.23        71.11        18.48        19.86 
TCGA-13-0791 TCGA-13-0890 TCGA-13-0905 TCGA-13-1492 TCGA-13-1512 TCGA-24-1846 
       38.93        67.99        47.84        73.55         3.09         4.37 
TCGA-24-1850 TCGA-24-2027 TCGA-25-1633 TCGA-29-1695 TCGA-29-1763 TCGA-30-1855 
        5.49       109.68        60.59         0.79        66.77         2.47 
TCGA-36-1575 TCGA-61-1727 TCGA-61-1919 TCGA-61-2012 
        8.55        18.54        38.17        30.64 

$`3Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       63.98        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       71.47        82.36        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       64.64        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2051 TCGA-09-2053 
        6.12        35.15         4.50       112.37        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       33.24        32.28        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       15.12         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       11.18        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
       21.40         8.42        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       35.28        35.28        13.61        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0891 TCGA-13-0893 
       74.27        66.64        70.39        61.81        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       57.47        56.15        57.07        19.36        47.38        48.33 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       44.94        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       21.14        14.89        13.81         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       10.88         6.61         7.36         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        4.70         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       29.39        98.04        20.68        22.39        70.82        82.88 
TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 
       52.44        38.17        49.22         4.24        54.31        37.61 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 
       38.37        13.97        32.84        16.57         4.21         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 TCGA-13-2059 
        4.77         4.14         2.56         3.88        14.24        12.23 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
        8.58        10.78         8.75         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 
        2.93         2.66        47.54        42.51        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 
        2.24        51.35        54.51         3.22        31.20        68.68 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        4.57        33.30        86.01       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 
       39.09        33.47        58.13         0.53        24.95       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        6.02         5.95         5.36         4.80        17.36        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       19.17        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 
       45.14       105.99         9.11         3.42         1.18        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       19.53        44.09        45.50        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       17.23        90.15        88.34        48.33        38.24         8.32 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 
        3.48         3.72         3.81        11.28         5.75         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 
       22.65        30.21        16.41        11.05        81.11         4.87 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 
      151.99        44.84        58.16        34.82        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       18.48        28.18        64.01        44.48        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       53.26         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
        1.02        34.98        65.00        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 
       12.00         2.96        18.58        18.02        15.78         0.36 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 TCGA-25-1635 
       20.58         7.86         0.30        56.94        35.54        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       14.93        24.99        18.05        85.05        13.02        49.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       44.71        47.18       101.75        38.53        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       68.28         0.53        16.90        18.64        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 
       41.95        29.23        34.62        17.00        85.68        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 
       12.36        11.84        12.30        14.93         8.35         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        5.36        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
        4.87        42.25        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 
       51.91        36.26        15.68         0.26        48.07        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
       34.78         6.08        36.62         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       21.53        22.85        22.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       18.31        20.52        14.17        16.14        11.47        14.30 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       21.14         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       31.40        27.88         4.34        31.76        28.47        48.79 
TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       44.84        35.80         2.43        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       31.30        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 
       43.43        15.75         1.97         5.52        14.50        17.98 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
        3.98        30.61        39.85         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 
        4.80         4.77        51.72        71.74        61.64        58.39 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       60.62        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       44.52       125.72        22.22        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.79              0.26 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           109.68            180.16 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            37.20             28.03 
[1] "0.8 - 109.7 (37.2)" "0.3 - 180.2 (28.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D45V2, continuous
D45V3, multiclass
                    clus
vv                   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           22               526
  PERITONEUM (OVARY)               0                 2
D45V4, continuous
D45V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      1   21
  3Q LOSS WILD-TYPE    2  528
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                1                 2
  YES              21               528
D45V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     15    7
  3Q LOSS WILD-TYPE  433   97
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO               15               433
  YES               7                97

Clustering(46) Variable = 4p loss mutation analysis
D46V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED   131 145
  4P LOSS WILD-TYPE 130 140
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              276               270 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              145               140 
$`4P LOSS MUTATED`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1343 TCGA-04-1348 TCGA-04-1350 TCGA-04-1361 
       40.24        41.00        11.87        48.76        63.98        32.52 
TCGA-04-1362 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       44.32        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1649 TCGA-04-1651 
       29.06        84.20        55.40        48.89        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 
       31.86        47.70        45.34        29.16         9.47        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1666 TCGA-09-1668 
       35.54         9.96        38.43        89.33        57.57        55.36 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
       30.48        17.98         8.55         6.15         6.12        35.15 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-10-0927 
      112.37        71.11        63.09        39.75        20.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0935 TCGA-13-0717 TCGA-13-0725 
       18.48        33.24        32.28        35.41        24.59        12.39 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0762 
       15.19        17.79        55.17         2.47        11.18        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 TCGA-13-0799 
       31.04        21.40        36.72        28.70        19.56         7.79 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0885 
        8.28        43.82        35.28        35.28        68.91        91.40 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 
       61.81        67.99        57.47        56.15        57.07        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       48.33        47.84        44.94        37.08        27.68        34.06 
TCGA-13-0916 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1407 
       21.14         4.64         6.41         6.08        10.88         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 
        5.92         6.84         4.70        22.39        82.88        52.44 
TCGA-13-1492 TCGA-13-1495 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1509 
       73.55        49.22        54.31        37.61        13.97         4.14 
TCGA-13-1510 TCGA-13-1512 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-20-0990 
        2.56         3.09        12.23        10.78         8.75        25.94 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       27.48        25.38        19.07         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1110 
       42.51        49.41         8.81        29.10        18.87        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
        3.22        31.20         4.57        33.30        86.01       129.96 
TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
       39.09        33.47        24.95        77.00        49.84         2.76 
TCGA-23-2643 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 
        4.70        11.64        21.80        41.56        22.32        54.08 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1428 TCGA-24-1431 
        0.76         6.25         5.95         5.36        17.36        19.17 
TCGA-24-1434 TCGA-24-1463 TCGA-24-1470 TCGA-24-1471 TCGA-24-1548 TCGA-24-1550 
       18.67        72.92         3.42         1.18        16.21        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       51.91        41.39        88.50        44.09        45.50        47.70 
TCGA-24-1567 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 
       17.23        48.33        38.24         8.32         3.72         3.81 
TCGA-24-1849 TCGA-24-1923 TCGA-24-1924 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 
        5.75        22.65        30.21        81.11       151.99        44.84 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2036 TCGA-24-2254 TCGA-24-2261 TCGA-24-2267 
      109.68        14.43        64.01        57.07         0.79        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2288 TCGA-24-2290 TCGA-24-2298 TCGA-25-1314 
       31.63        70.45         0.82        36.23        53.26        31.99 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       37.02         1.02        34.98         2.99        12.00         2.96 
TCGA-25-1623 TCGA-25-1627 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 
       18.58         0.36         0.30        60.59        35.54        14.93 
TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 TCGA-25-2404 TCGA-25-2408 TCGA-29-1688 
       24.99        13.02        49.05        29.00        30.97        78.87 
TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       38.53         0.79        33.70        31.17        68.28         0.53 
TCGA-29-1705 TCGA-29-1762 TCGA-29-1768 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 
       18.25        85.68        31.23        12.30         8.35         7.20 
TCGA-29-2414 TCGA-29-2428 TCGA-29-2434 TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 
       86.17        45.11        11.47        38.07        36.26        15.68 
TCGA-30-1859 TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1891 TCGA-31-1950 
       48.07        34.78        36.62        57.57        30.05        18.77 
TCGA-31-1953 TCGA-31-1955 TCGA-36-1568 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 
        6.71        42.51        28.73        22.55        30.05        25.74 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2542 
       24.23        24.69        33.01        29.49        29.79        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 
        2.24        20.98        18.31        20.52        14.17        16.14 
TCGA-42-2588 TCGA-57-1584 TCGA-57-1992 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 
        9.44        21.14        28.96        22.32        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
        5.39        44.78         4.34        28.47        48.79        44.84 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        1.41         8.42         5.79        13.02         9.07        34.13 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 TCGA-61-2003 
       48.92        56.58        43.43        38.17         1.97         3.98 
TCGA-61-2008 TCGA-61-2016 TCGA-61-2018 TCGA-61-2087 TCGA-61-2094 TCGA-61-2101 
       30.61         1.18        45.40         4.80        71.74        55.50 
TCGA-61-2102 TCGA-61-2109 TCGA-61-2110 TCGA-61-2610 TCGA-61-2612 TCGA-61-2613 
        6.48        20.68        44.52        51.91         6.35        31.07 

$`4P LOSS WILD-TYPE`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 TCGA-04-1346 
        1.81        49.15         2.01        46.62        18.51        65.49 
TCGA-04-1347 TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 TCGA-04-1364 TCGA-04-1365 
       63.06        21.57        65.46        49.28        33.67        76.54 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1646 TCGA-04-1648 TCGA-09-0366 TCGA-09-1664 
       38.37       119.08        27.88        28.64        57.73        74.89 
TCGA-09-1665 TCGA-09-1667 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2048 
       41.59        61.87         5.85         3.02        97.55         4.50 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0933 TCGA-10-0934 
       26.93        12.46        54.31        25.91        11.70         3.88 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0723 
       35.80        15.12        19.86         6.21        44.55        39.58 
TCGA-13-0724 TCGA-13-0726 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0768 
        2.73        31.07        11.38        11.54        34.06         8.42 
TCGA-13-0791 TCGA-13-0794 TCGA-13-0797 TCGA-13-0800 TCGA-13-0802 TCGA-13-0807 
       38.93        30.35         8.71         8.12         8.19        13.61 
TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0891 TCGA-13-0893 
      107.18        74.27        66.64        70.39        69.01        43.36 
TCGA-13-0901 TCGA-13-0908 TCGA-13-0913 TCGA-13-0919 TCGA-13-0920 TCGA-13-1404 
       19.36        44.84        29.98        14.89        13.81         6.61 
TCGA-13-1405 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        7.36         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1494 TCGA-13-1496 
       29.39        98.04        20.68        70.82        38.17         4.24 
TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       38.37        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1511 TCGA-13-2057 TCGA-13-2060 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 
        3.88        14.24         8.58         6.28        23.05        26.20 
TCGA-20-0996 TCGA-20-1685 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       72.20        16.67        40.54        15.39        26.83        31.73 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1114 TCGA-23-1120 TCGA-23-1121 TCGA-23-1124 
        2.24        51.35        68.68         4.27         6.38        58.13 
TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2645 TCGA-24-0966 
        0.53       115.89        87.48        91.66         4.50         7.63 
TCGA-24-0968 TCGA-24-0980 TCGA-24-1104 TCGA-24-1424 TCGA-24-1427 TCGA-24-1430 
       19.63         7.66        63.55         6.02         4.80        28.34 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
       43.53         8.55        12.46        45.14       105.99         9.11 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1553 
       22.19        26.96        57.37        64.27        56.58        58.09 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 
       70.62        39.88        19.53        25.87        10.26        90.15 
TCGA-24-1604 TCGA-24-1843 TCGA-24-1846 TCGA-24-1847 TCGA-24-1850 TCGA-24-1920 
       88.34         3.48         4.37        11.28         5.49         9.80 
TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 TCGA-24-2024 TCGA-24-2026 TCGA-24-2030 
       16.41        11.05         4.87        58.16        34.82        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2038 TCGA-24-2260 TCGA-24-2262 TCGA-24-2281 
       18.48        28.18        44.48        36.16         0.36        44.58 
TCGA-24-2289 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 
       67.36        16.64        33.11        55.86         1.02        26.93 
TCGA-25-1315 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1625 TCGA-25-1626 
       51.06        65.00        36.95        33.96        18.02        15.78 
TCGA-25-1628 TCGA-25-1630 TCGA-25-1632 TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 
       20.58         7.86        56.94        51.22        18.05        85.05 
TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
        1.02        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       42.02         2.96        26.96        44.71        47.18       101.75 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       16.90        18.64        59.67        41.95        29.23        34.62 
TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 TCGA-29-1770 
       17.00        66.77        62.93        39.09        22.98        24.36 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 TCGA-29-1784 
       22.52        17.29        12.36        11.84        14.93         5.36 
TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       34.62        65.00        62.47         4.87        42.25        11.84 
TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1857 TCGA-30-1860 TCGA-30-1862 
        9.76        51.91         2.47         0.26        44.91         6.08 
TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 
        1.18        24.26        48.79        45.57        30.18        22.45 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 
       44.09         2.17        29.06        21.53        22.85         8.55 
TCGA-36-1578 TCGA-36-2529 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2552 
       27.85        35.05        25.91        25.08        23.80        11.47 
TCGA-42-2582 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
       14.30         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
        1.74        22.32        25.05        25.02       180.16        80.12 
TCGA-59-2351 TCGA-59-2352 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
      116.12         9.40        11.11         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       18.54        27.88        31.76        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1901 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1915 
       43.69        11.41        31.30        37.02        42.48        67.73 
TCGA-61-1918 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2009 TCGA-61-2012 
       15.75         5.52        14.50        17.98        39.85        30.64 
TCGA-61-2017 TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
       45.96         4.77        51.72        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2104 TCGA-61-2111 TCGA-61-2113 TCGA-61-2611 TCGA-61-2614 
       65.49        76.83       125.72        22.22        15.88         8.58 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.30              0.26 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           151.99            180.16 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           29.920            26.515 
[1] "0.3 - 152.0 (29.9)" "0.3 - 180.2 (26.5)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
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  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
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"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-61-2613        TCGA-61-2614 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D46V2, continuous
D46V3, multiclass
                    clus
vv                   4P LOSS MUTATED 4P LOSS WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          279               269
  PERITONEUM (OVARY)               0                 2
D46V4, continuous
D46V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      2  278
  4P LOSS WILD-TYPE    1  271
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO                2                 1
  YES             278               271
D46V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED    230   50
  4P LOSS WILD-TYPE  218   54
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO              230               218
  YES              50                54

Clustering(47) Variable = 4q loss mutation analysis
D47V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED   153 162
  4Q LOSS WILD-TYPE 108 123
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              315               231 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              162               123 
$`4Q LOSS MUTATED`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
       40.24        41.00        49.15        11.87        65.49        63.06 
TCGA-04-1348 TCGA-04-1350 TCGA-04-1361 TCGA-04-1362 TCGA-04-1367 TCGA-04-1371 
       48.76        63.98        32.52        44.32        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 
       56.55        41.59        19.99        29.06        84.20        55.40 
TCGA-04-1644 TCGA-04-1649 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       48.89        64.64        31.86        47.70        45.34        29.16 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1666 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 
       74.89        57.57        30.48        17.98         3.02         8.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.15         6.12        35.15       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0926 TCGA-10-0927 
       39.75        20.91        26.93        12.46        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0935 TCGA-10-0937 TCGA-13-0717 
       18.48        33.24        32.28        35.41        15.12        24.59 
TCGA-13-0720 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 
       44.55        12.39        15.19        17.79        55.17        11.18 
TCGA-13-0762 TCGA-13-0766 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 
       32.25        21.40        38.93        36.72        28.70        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.71         7.79         8.28        43.82        35.28        35.28 
TCGA-13-0883 TCGA-13-0885 TCGA-13-0889 TCGA-13-0890 TCGA-13-0897 TCGA-13-0899 
       68.91        91.40        61.81        67.99        57.47        56.15 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        47.84        44.94        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       34.06        29.98        21.14         4.64         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
       10.88         6.61         6.05         5.92         6.84         4.70 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 TCGA-13-1497 
       22.39        82.88        52.44        73.55        49.22        54.31 
TCGA-13-1500 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2059 
       13.97         4.14         2.56         3.88         3.09        12.23 
TCGA-13-2061 TCGA-13-2065 TCGA-20-0990 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
       10.78         8.75        25.94        27.48        25.38        19.07 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1027 TCGA-23-1028 
        2.93         2.66        47.54        42.51        31.73        49.41 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
        8.81        29.10        18.87        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1122 
       68.68         4.57        33.30        86.01       129.96        39.09 
TCGA-23-1123 TCGA-23-2072 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       33.47        24.95        77.00        49.84         2.76         4.70 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 
       11.64        21.80        41.56        22.32        54.08        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        6.31         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 
        6.25         5.95         5.36        17.36        28.34        19.17 
TCGA-24-1434 TCGA-24-1463 TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 
       18.67        72.92         3.42         1.18        26.96        57.37 
TCGA-24-1548 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1555 TCGA-24-1560 
       16.21        41.06        51.91        41.39        88.50        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1567 TCGA-24-1603 TCGA-24-1616 TCGA-24-1842 
       45.50        47.70        17.23        90.15        38.24         8.32 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 
        3.72         3.81         4.37         5.75         9.80        22.65 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2027 
       11.05        81.11         4.87       151.99        44.84       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 TCGA-24-2267 
       14.43        53.95        64.01        57.07        36.16        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2288 TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 
       31.63        70.45         0.82        36.23        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
       53.26         1.02        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       34.98         2.99        12.00         2.96        18.58        18.02 
TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
        0.36         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 TCGA-25-2398 
       51.22        14.93        24.99        13.02        49.05        45.01 
TCGA-25-2404 TCGA-25-2408 TCGA-29-1688 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       29.00        30.97        78.87         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1705 TCGA-29-1761 TCGA-29-1762 TCGA-29-1769 
       68.28         0.53        18.25        17.00        85.68        22.98 
TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-2414 TCGA-29-2428 
       11.84        12.30         8.35         7.20        86.17        45.11 
TCGA-29-2434 TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 TCGA-30-1859 TCGA-30-1861 
       11.47        38.07        36.26        15.68        48.07        34.78 
TCGA-30-1866 TCGA-30-1880 TCGA-30-1891 TCGA-31-1946 TCGA-31-1950 TCGA-31-1953 
       36.62        57.57        30.05        30.18        18.77         6.71 
TCGA-31-1955 TCGA-36-1568 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       42.51        28.73        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 
       30.05        25.74        24.23        24.69        33.01        29.49 
TCGA-36-2534 TCGA-36-2538 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 
       29.79        25.08         2.24        20.98        18.31        14.17 
TCGA-36-2551 TCGA-42-2588 TCGA-42-2589 TCGA-42-2591 TCGA-57-1584 TCGA-57-1992 
       16.14         9.44         7.56         7.63        21.14        28.96 
TCGA-57-1994 TCGA-59-2350 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
       25.02        22.32        34.39         2.14         5.39        44.78 
TCGA-61-1725 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       31.40         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1741 TCGA-61-1899 TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
       33.67         8.42         5.79        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1995 TCGA-61-2003 
       31.30        56.58        43.43        15.75         1.97         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2018 TCGA-61-2087 TCGA-61-2094 
       30.61        39.85         1.18        45.40         4.80        71.74 
TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       60.62        65.49        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2613 TCGA-61-2614 
       44.52        31.07         8.58 

$`4Q LOSS WILD-TYPE`
TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 TCGA-04-1349 TCGA-04-1351 
        1.81         2.01        46.62        18.51        21.57        65.46 
TCGA-04-1356 TCGA-04-1364 TCGA-04-1365 TCGA-04-1525 TCGA-04-1530 TCGA-04-1646 
       49.28        33.67        76.54        38.37       119.08        27.88 
TCGA-04-1648 TCGA-04-1651 TCGA-09-0365 TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 
       28.64        36.23         9.47        41.59        61.87        55.36 
TCGA-09-1672 TCGA-09-1675 TCGA-09-2048 TCGA-10-0925 TCGA-10-0933 TCGA-10-0934 
        5.85        97.55         4.50        54.31        11.70         3.88 
TCGA-10-0936 TCGA-10-0938 TCGA-13-0714 TCGA-13-0723 TCGA-13-0724 TCGA-13-0726 
       35.80        19.86         6.21        39.58         2.73        31.07 
TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0768 
        2.47        11.38        11.54        34.06        31.04         8.42 
TCGA-13-0794 TCGA-13-0800 TCGA-13-0802 TCGA-13-0807 TCGA-13-0884 TCGA-13-0886 
       30.35         8.12         8.19        13.61       107.18        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0891 TCGA-13-0893 TCGA-13-0900 TCGA-13-0901 
       66.64        70.39        69.01        43.36        57.07        19.36 
TCGA-13-0908 TCGA-13-0919 TCGA-13-0920 TCGA-13-1405 TCGA-13-1411 TCGA-13-1412 
       44.84        14.89        13.81         7.36         4.21         5.33 
TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
       54.61        87.06        61.71        29.39        98.04        20.68 
TCGA-13-1488 TCGA-13-1494 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1501 
       70.82        38.17         4.24        37.61        38.37        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-2057 TCGA-13-2060 
       16.57         4.21         4.41         4.77        14.24         8.58 
TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1685 TCGA-23-1023 
        6.28        23.05        26.20        72.20        16.67        40.54 
TCGA-23-1024 TCGA-23-1026 TCGA-23-1032 TCGA-23-1109 TCGA-23-1120 TCGA-23-1121 
       15.39        26.83         2.24        51.35         4.27         6.38 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2645 
       58.13         0.53       115.89        87.48        91.66         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0980 TCGA-24-1104 TCGA-24-1424 TCGA-24-1427 
        7.63        19.63         7.66        63.55         6.02         4.80 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
       43.53         8.55        12.46        45.14       105.99         9.11 
TCGA-24-1474 TCGA-24-1546 TCGA-24-1549 TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 
       22.19        64.27        56.58        58.09        70.62        39.88 
TCGA-24-1558 TCGA-24-1564 TCGA-24-1565 TCGA-24-1604 TCGA-24-1614 TCGA-24-1843 
       19.53        25.87        10.26        88.34        48.33         3.48 
TCGA-24-1847 TCGA-24-1850 TCGA-24-1924 TCGA-24-1927 TCGA-24-2024 TCGA-24-2026 
       11.28         5.49        30.21        16.41        58.16        34.82 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2038 TCGA-24-2261 TCGA-24-2262 TCGA-24-2281 
       18.48        28.18        44.48         0.79         0.36        44.58 
TCGA-24-2289 TCGA-24-2293 TCGA-25-1313 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       67.36        16.64        26.93        65.00        36.95        33.96 
TCGA-25-1626 TCGA-25-1628 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 
       15.78        20.58        18.05        85.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2409 
        3.02        12.00        19.99        42.02         2.96        26.96 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1701 TCGA-29-1702 
       44.71        47.18       101.75        38.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1763 TCGA-29-1764 
       59.67        41.95        29.23        34.62        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       39.09        31.23        24.36        22.52        17.29        12.36 
TCGA-29-1778 TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 
       14.93         5.36        34.62        65.00        62.47         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1857 
       42.25        11.84         9.76        51.91         2.47         0.26 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 
       44.91         6.08         1.18        24.26        48.79        45.57 
TCGA-31-1951 TCGA-31-1956 TCGA-31-1959 TCGA-36-1569 TCGA-36-1578 TCGA-36-2529 
       22.45        44.09         2.17        29.06        27.85        35.05 
TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2547 TCGA-36-2552 TCGA-42-2582 
       25.91        23.80        21.60        20.52        11.47        14.30 
TCGA-42-2590 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 
        7.46        24.03        11.38         1.74        22.32        25.05 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2351 TCGA-59-2352 TCGA-61-1721 TCGA-61-1722 
      180.16        80.12       116.12         9.40        11.11         8.05 
TCGA-61-1724 TCGA-61-1727 TCGA-61-1728 TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 
       20.94        18.54        27.88        35.80         2.43        43.69 
TCGA-61-1895 TCGA-61-1901 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1915 
        1.41        11.41        37.02        42.48        48.92        67.73 
TCGA-61-1919 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2012 TCGA-61-2017 
       38.17         5.52        14.50        17.98        30.64        45.96 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2111 TCGA-61-2113 
        4.77        51.72        61.64        58.39       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       51.91        15.88         6.35 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.30              0.26 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           151.99            180.16 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            29.16             26.20 
[1] "0.3 - 152.0 (29.2)" "0.3 - 180.2 (26.2)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
[1] "hr=" "1"  
D47V2, continuous
D47V3, multiclass
                    clus
vv                   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          319               229
  PERITONEUM (OVARY)               0                 2
D47V4, continuous
D47V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      2  318
  4Q LOSS WILD-TYPE    1  231
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO                2                 1
  YES             318               231
D47V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED    263   57
  4Q LOSS WILD-TYPE  185   47
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO              263               185
  YES              57                47

Clustering(48) Variable = 5p loss mutation analysis
D48V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED    40  58
  5P LOSS WILD-TYPE 221 227
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               98               448 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               58               227 
$`5P LOSS MUTATED`
TCGA-04-1331 TCGA-04-1338 TCGA-04-1351 TCGA-04-1361 TCGA-04-1371 TCGA-04-1517 
       40.24        46.62        65.46        32.52        82.36        19.99 
TCGA-04-1542 TCGA-04-1648 TCGA-09-0364 TCGA-09-0365 TCGA-09-1661 TCGA-09-1665 
       84.20        28.64        29.16         9.47        38.43        41.59 
TCGA-09-1669 TCGA-09-2045 TCGA-09-2049 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       30.48        35.15       112.37        19.86         6.21        24.59 
TCGA-13-0761 TCGA-13-0803 TCGA-13-0805 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       34.06        43.82        35.28        67.99        69.01        43.36 
TCGA-13-0916 TCGA-13-1405 TCGA-13-1412 TCGA-13-1491 TCGA-13-1497 TCGA-13-1510 
       21.14         7.36         5.33        52.44        54.31         2.56 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-20-1683 TCGA-23-1022 TCGA-23-1029 
       14.24        12.23         8.58        25.38        42.51         8.81 
TCGA-23-1109 TCGA-23-1114 TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2077 
       51.35        68.68        39.09        33.47        24.95       115.89 
TCGA-24-1430 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1548 TCGA-24-1552 
       28.34        45.14       105.99         3.42        16.21        41.39 
TCGA-24-1558 TCGA-24-1564 TCGA-24-1567 TCGA-24-1843 TCGA-24-2019 TCGA-24-2033 
       19.53        25.87        17.23         3.48         4.87        18.48 
TCGA-24-2254 TCGA-24-2261 TCGA-24-2271 TCGA-24-2297 TCGA-25-1312 TCGA-25-1317 
       57.07         0.79        31.63        55.86         1.02         1.02 
TCGA-25-1323 TCGA-25-1633 TCGA-25-1635 TCGA-25-1871 TCGA-25-2398 TCGA-25-2400 
       12.00        60.59        51.22        24.99        45.01        42.02 
TCGA-29-1694 TCGA-29-1696 TCGA-29-1702 TCGA-29-1711 TCGA-29-1762 TCGA-29-1769 
       38.53        33.70        18.64        34.62        85.68        22.98 
TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 TCGA-30-1855 TCGA-30-1859 
       12.36        12.30        14.93         7.20         2.47        48.07 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-31-1944 TCGA-31-1953 
       34.78        36.62         1.18        24.26        45.57         6.71 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1575 TCGA-36-1577 TCGA-57-1992 TCGA-59-2348 
       44.09         2.17         8.55        25.74        28.96       180.16 
TCGA-59-2352 TCGA-59-2354 TCGA-61-1727 TCGA-61-1743 TCGA-61-1906 TCGA-61-1907 
        9.40        34.39        18.54        43.69        34.13        31.30 
TCGA-61-1998 TCGA-61-2102 
        5.52         6.48 

$`5P LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 
       41.00         1.81        49.15         2.01        18.51        11.87 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 
       65.49        63.06        48.76        21.57        63.98        49.28 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 
       44.32        33.67        76.54        71.47        56.55        41.59 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
       38.37       119.08        29.06        55.40        48.89        27.88 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0366 
       64.64        36.23        31.86        47.70        45.34        57.73 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 
       17.95        35.54         9.96        89.33        74.89        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 
       61.87        55.36        17.98         5.85         3.02         8.55 
TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 
       97.55         6.15         6.12         4.50        71.11        63.09 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
       39.75        20.91        26.93        12.46        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       35.41        35.80        15.12        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 
       11.18        11.38        11.54        32.25        31.04        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
        8.42        38.93        36.72        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0804 
        8.71         7.79         8.12         8.28         8.19        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       70.39        61.81        57.47        56.15        57.07        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       47.38        48.33        47.84        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       27.68        34.06        29.98        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 
        6.41         6.08        10.88         6.61         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        6.84         4.70         4.21        54.61        87.06        61.71 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       29.39        98.04        20.68        22.39        70.82        82.88 
TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 
       73.55        38.17        49.22         4.24        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 
       13.97        32.84        16.57         4.21         4.41         4.77 
TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        4.14         3.88         3.09        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 
       23.05        25.94        26.20        72.20        27.48        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 
       16.67         2.93         2.66        47.54        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       26.83        31.73        49.41        29.10        18.87         2.24 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 
       54.51         3.22        31.20         4.57        33.30        86.01 
TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1124 TCGA-23-1809 TCGA-23-2078 
      129.96         4.27         6.38        58.13         0.53        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        7.82         7.99         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 
        5.95         5.36         4.80        17.36        19.17        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1469 TCGA-24-1471 
       43.53         8.55        72.92        12.46         9.11         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 
       22.19        26.96        57.37        64.27        56.58        41.06 
TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 
       51.91        58.09        88.50        70.62        39.88        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       45.50        47.70        10.26        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
       38.24         8.32         3.72         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       11.05        81.11       151.99        44.84        58.16        34.82 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
      109.68        14.43        53.95        28.18        64.01        44.48 
TCGA-24-2260 TCGA-24-2262 TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
       36.16         0.36        47.54        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2298 TCGA-25-1313 
       67.36        36.23        16.64        33.11        53.26        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 
       31.99        51.06        37.02        34.98        65.00        36.95 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       33.96         2.99         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 
        0.36        20.58         7.86         0.30        56.94        35.54 
TCGA-25-1870 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       14.93        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 
       38.04         3.02        12.00        19.99         2.96        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       30.97        26.96        78.87        44.71        47.18       101.75 
TCGA-29-1695 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1703 
        0.79        31.17        68.28         0.53        16.90        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 
       18.25        41.95        29.23        17.00        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 
       39.09        31.23        24.36        22.52        17.29        11.84 
TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 
        8.35         5.36        34.62        86.17        65.00        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       45.11         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 
       38.07        51.91        36.26        15.68         0.26        44.91 
TCGA-30-1862 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 TCGA-31-1950 
        6.08        57.57        30.05        48.79        30.18        18.77 
TCGA-31-1951 TCGA-31-1955 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       22.45        42.51        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       22.55        30.05        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       33.01        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       16.14        11.47        14.30         9.44         7.56         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 
        7.63        24.03        11.38        21.14         1.74        22.32 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2355 
       25.05        25.02        80.12        22.32       116.12         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        5.39        44.78        11.11         8.05        20.94        31.40 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       27.88         4.34        31.76        28.47        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
       35.80         2.43        33.67         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       11.41        13.02         9.07        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       56.58        67.73        43.43        15.75        38.17         1.97 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
       76.83        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       15.88         6.35        31.07         8.58 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.79              0.26 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           180.16            151.99 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           29.820            27.865 
[1] "0.8 - 180.2 (29.8)" "0.3 - 152.0 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D48V2, continuous
D48V3, multiclass
                    clus
vv                   5P LOSS MUTATED 5P LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          100               448
  PERITONEUM (OVARY)               0                 2
D48V4, continuous
D48V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      1   99
  5P LOSS WILD-TYPE    2  450
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                1                 2
  YES              99               450
D48V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     79   21
  5P LOSS WILD-TYPE  369   83
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO               79               369
  YES              21                83

Clustering(49) Variable = 5q loss mutation analysis
D49V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    97 113
  5Q LOSS WILD-TYPE 164 172
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              210               336 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              113               172 
$`5Q LOSS MUTATED`
TCGA-04-1331 TCGA-04-1338 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 
       40.24        46.62        63.98        65.46        49.28        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1371 TCGA-04-1517 TCGA-04-1542 TCGA-04-1644 
       44.32        33.67        82.36        19.99        84.20        48.89 
TCGA-04-1648 TCGA-04-1649 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0369 
       28.64        64.64        29.16         9.47        57.73        35.54 
TCGA-09-1661 TCGA-09-1665 TCGA-09-1666 TCGA-09-1669 TCGA-09-1670 TCGA-09-2043 
       38.43        41.59        57.57        30.48        17.98         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2054 TCGA-10-0927 TCGA-10-0933 
        6.12        35.15       112.37        20.91        81.47        11.70 
TCGA-10-0934 TCGA-10-0938 TCGA-13-0717 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 
        3.88        19.86        24.59        11.54        34.06        31.04 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
       28.70        30.35         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 TCGA-13-0901 
       35.28        67.99        69.01        43.36        56.15        19.36 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0916 TCGA-13-0920 TCGA-13-0924 
       48.33        47.84        44.94        21.14        13.81         6.08 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1412 TCGA-13-1491 TCGA-13-1492 
        7.36         6.05         5.92         5.33        52.44        73.55 
TCGA-13-1494 TCGA-13-1496 TCGA-13-1497 TCGA-13-1505 TCGA-13-1509 TCGA-13-1510 
       38.17         4.24        54.31         4.21         4.14         2.56 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-20-0990 TCGA-20-1684 TCGA-20-1686 
       14.24        12.23         8.58        25.94        19.07         2.93 
TCGA-23-1022 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1032 
       42.51        31.73        49.41         8.81        29.10         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 TCGA-23-1122 
       51.35        54.51        31.20        68.68        86.01        39.09 
TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2084 TCGA-23-2643 
       33.47        58.13        24.95       115.89        49.84         4.70 
TCGA-24-1418 TCGA-24-1423 TCGA-24-1424 TCGA-24-1430 TCGA-24-1434 TCGA-24-1463 
        7.99         6.25         6.02        28.34        18.67        72.92 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1546 TCGA-24-1548 
       45.14       105.99         9.11         3.42        64.27        16.21 
TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 TCGA-24-1553 TCGA-24-1558 TCGA-24-1564 
       56.58        41.06        41.39        58.09        19.53        25.87 
TCGA-24-1567 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1847 TCGA-24-1923 
       17.23        48.33        38.24         3.48        11.28        22.65 
TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 TCGA-24-2027 
       30.21        81.11         4.87       151.99        34.82       109.68 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2271 
       53.95        18.48        57.07        36.16         0.79        31.63 
TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 
       33.11        55.86        53.26         1.02        26.93        51.06 
TCGA-25-1317 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1633 TCGA-25-1635 
        1.02        33.96         2.99        12.00        60.59        51.22 
TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2392 TCGA-25-2396 TCGA-25-2398 
       14.93        24.99        85.05         1.02         3.02        45.01 
TCGA-25-2400 TCGA-29-1691 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1701 
       42.02        47.18        38.53         0.79        33.70        16.90 
TCGA-29-1702 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 
       18.64        34.62        85.68        62.93        39.09        22.98 
TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 TCGA-29-2428 
       12.36        12.30        14.93         7.20         5.36        45.11 
TCGA-29-2431 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       42.25        51.91         2.47        15.68         0.26        48.07 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-31-1953 TCGA-31-1955 
       34.78        36.62         1.18        24.26         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1575 TCGA-36-1577 TCGA-36-2537 TCGA-36-2538 
       44.09         2.17         8.55        25.74        25.91        25.08 
TCGA-36-2545 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
       18.31         7.46         7.63        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1992 TCGA-57-1994 TCGA-59-2348 TCGA-59-2351 TCGA-59-2352 
        1.74        28.96        25.02       180.16       116.12         9.40 
TCGA-61-1724 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1743 TCGA-61-1895 
       20.94        18.54        27.88        31.76        43.69         1.41 
TCGA-61-1899 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1917 TCGA-61-1998 
        8.42        13.02        34.13        31.30        43.43         5.52 
TCGA-61-2008 TCGA-61-2012 TCGA-61-2088 TCGA-61-2097 TCGA-61-2102 TCGA-61-2111 
       30.61        30.64         4.77        60.62         6.48       125.72 

$`5Q LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 
       41.00         1.81        49.15         2.01        18.51        11.87 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1365 TCGA-04-1367 
       65.49        63.06        48.76        21.57        76.54        71.47 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 
       56.55        41.59        38.37       119.08        29.06        55.40 
TCGA-04-1646 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0367 
       27.88        36.23        31.86        47.70        45.34        17.95 
TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1667 TCGA-09-1668 TCGA-09-1672 
        9.96        89.33        74.89        61.87        55.36         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2048 TCGA-09-2050 TCGA-09-2051 
        3.02         8.55        97.55         4.50        71.11        63.09 
TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 
       39.75        26.93        12.46        54.31        25.91        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 
       33.24        32.28        35.41        35.80        15.12         6.21 
TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       44.55        39.58         2.73        12.39        31.07        15.19 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0762 
       17.79        55.17         2.47        11.18        11.38        32.25 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0795 TCGA-13-0797 
       21.40         8.42        38.93        36.72        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
        7.79         8.12        13.61        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0897 TCGA-13-0900 
       74.27        66.64        70.39        61.81        57.47        57.07 
TCGA-13-0903 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       47.38        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-1403 TCGA-13-1404 TCGA-13-1409 
       14.89         4.64         6.41        10.88         6.61         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.70         4.21        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1495 
       98.04        20.68        22.39        70.82        82.88        49.22 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 
       37.61        38.37        13.97        32.84        16.57         4.41 
TCGA-13-1507 TCGA-13-1511 TCGA-13-1512 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        4.77         3.88         3.09        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 
       23.05        26.20        72.20        27.48        25.38        16.67 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1031 
        2.66        47.54        40.54        15.39        26.83        18.87 
TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        3.22         4.57        33.30       129.96         4.27         6.38 
TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 TCGA-23-2645 
        0.53        87.48        91.66        77.00         2.76         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        7.82         7.86         0.76         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1431 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1471 
       17.36        19.17        43.53         8.55        12.46         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1551 TCGA-24-1555 TCGA-24-1556 
       22.19        26.96        57.37        51.91        88.50        70.62 
TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1565 TCGA-24-1603 
       39.88        44.09        45.50        47.70        10.26        90.15 
TCGA-24-1604 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1849 
       88.34         8.32         3.72         3.81         4.37         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1927 TCGA-24-1928 TCGA-24-2023 TCGA-24-2024 
        5.49         9.80        16.41        11.05        44.84        58.16 
TCGA-24-2029 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2262 TCGA-24-2267 
       14.43        28.18        64.01        44.48         0.36        47.54 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-25-1314 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1329 
       31.99        37.02        34.98        65.00        36.95         2.96 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1634 TCGA-25-1877 TCGA-25-2042 TCGA-25-2391 
        0.30        56.94        35.54        18.05        13.02        49.05 
TCGA-25-2393 TCGA-25-2397 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       38.04        12.00        19.99         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1697 TCGA-29-1698 
       26.96        78.87        44.71       101.75        31.17        68.28 
TCGA-29-1699 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 
        0.53        59.67        18.25        41.95        29.23        17.00 
TCGA-29-1763 TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 
       66.77        31.23        24.36        22.52        17.29        11.84 
TCGA-29-1781 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 
        8.35        34.62        86.17        65.00        62.47         4.87 
TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1860 
       11.84        11.47         9.76        38.07        36.26        44.91 
TCGA-30-1862 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        6.08        57.57        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       18.77        22.45        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       22.55        30.05        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       33.01        29.49        29.79        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       20.98        20.52        14.17        16.14        11.47        14.30 
TCGA-42-2588 TCGA-42-2589 TCGA-57-1586 TCGA-57-1993 TCGA-59-2349 TCGA-59-2350 
        9.44         7.56        22.32        25.05        80.12        22.32 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1725 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       31.40         4.34        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1900 TCGA-61-1901 TCGA-61-1904 TCGA-61-1910 
        2.43        33.67         5.79        11.41         9.07        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 
       42.48        48.92        56.58        67.73        15.75        38.17 
TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 TCGA-61-2016 
        1.97        14.50        17.98         3.98        39.85         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.96        45.40         4.80        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       58.39        65.49        55.50        76.83        20.68        44.52 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88         6.35        31.07         8.58 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.26              0.30 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           180.16            129.96 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            30.28             26.96 
[1] "0.3 - 180.2 (30.3)" "0.3 - 130.0 (27.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
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  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
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  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
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"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D49V2, continuous
D49V3, multiclass
                    clus
vv                   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          212               336
  PERITONEUM (OVARY)               1                 1
D49V4, continuous
D49V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      2  211
  5Q LOSS WILD-TYPE    1  338
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO                2                 1
  YES             211               338
D49V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED    168   45
  5Q LOSS WILD-TYPE  280   59
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO              168               280
  YES              45                59

Clustering(50) Variable = 6p loss mutation analysis
D50V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    59  73
  6P LOSS WILD-TYPE 202 212
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              132               414 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               73               212 
$`6P LOSS MUTATED`
TCGA-04-1367 TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 
       71.47        27.88        64.64        36.23        31.86        45.34 
TCGA-09-0365 TCGA-09-0369 TCGA-09-1659 TCGA-09-1670 TCGA-09-1672 TCGA-09-1675 
        9.47        35.54         9.96        17.98         5.85        97.55 
TCGA-09-2043 TCGA-09-2044 TCGA-09-2053 TCGA-09-2056 TCGA-10-0926 TCGA-10-0930 
        6.15         6.12        39.75        12.46        25.91        33.24 
TCGA-13-0714 TCGA-13-0720 TCGA-13-0725 TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 
        6.21        44.55        12.39        31.07        17.79        55.17 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0766 TCGA-13-0793 TCGA-13-0801 TCGA-13-0802 
       11.18        11.38        21.40        28.70         8.28         8.19 
TCGA-13-0803 TCGA-13-0884 TCGA-13-0887 TCGA-13-0890 TCGA-13-0897 TCGA-13-0900 
       43.82       107.18        66.64        67.99        57.47        57.07 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0913 TCGA-13-0921 
       47.84        44.94        37.08        27.68        29.98         4.64 
TCGA-13-1405 TCGA-13-1491 TCGA-13-1495 TCGA-13-1501 TCGA-13-1506 TCGA-13-1512 
        7.36        52.44        49.22        32.84         4.41         3.09 
TCGA-13-2059 TCGA-20-1682 TCGA-20-1683 TCGA-23-1021 TCGA-23-1024 TCGA-23-1113 
       12.23        27.48        25.38        47.54        15.39        31.20 
TCGA-23-1118 TCGA-23-1123 TCGA-23-2072 TCGA-23-2078 TCGA-23-2084 TCGA-24-0966 
       86.01        33.47        24.95        87.48        49.84         7.63 
TCGA-24-1103 TCGA-24-1416 TCGA-24-1426 TCGA-24-1427 TCGA-24-1434 TCGA-24-1467 
       54.08         6.38         5.36         4.80        18.67       105.99 
TCGA-24-1471 TCGA-24-1546 TCGA-24-1552 TCGA-24-1560 TCGA-24-1562 TCGA-24-1923 
        1.18        64.27        41.39        44.09        45.50        22.65 
TCGA-24-1927 TCGA-24-2019 TCGA-24-2023 TCGA-24-2027 TCGA-24-2261 TCGA-24-2262 
       16.41         4.87        44.84       109.68         0.79         0.36 
TCGA-24-2271 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1315 TCGA-25-1316 
       31.63        33.11        55.86        53.26        51.06        37.02 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1329 TCGA-25-1635 TCGA-25-2042 
       36.95        33.96         2.99         2.96        51.22        13.02 
TCGA-29-1688 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1703 TCGA-29-1707 
       78.87        38.53        33.70        31.17        59.67        41.95 
TCGA-29-1762 TCGA-29-1766 TCGA-29-1771 TCGA-29-1781 TCGA-29-1784 TCGA-29-2428 
       85.68        39.09        22.52         8.35         5.36        45.11 
TCGA-30-1714 TCGA-30-1853 TCGA-30-1857 TCGA-30-1859 TCGA-30-1866 TCGA-30-1880 
       38.07        36.26         0.26        48.07        36.62        57.57 
TCGA-31-1951 TCGA-36-1574 TCGA-36-1580 TCGA-36-2543 TCGA-36-2548 TCGA-42-2589 
       22.45        22.55        24.23         2.24        14.17         7.56 
TCGA-42-2591 TCGA-57-1584 TCGA-59-2350 TCGA-59-2354 TCGA-59-2363 TCGA-61-1724 
        7.63        21.14        22.32        34.39         5.39        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1740 
       31.40        18.54        31.76        28.47        48.79         2.43 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1913 TCGA-61-1995 TCGA-61-2096 TCGA-61-2110 
        9.07        34.13        48.92         1.97        58.39        44.52 

$`6P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       76.54        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1648 
      119.08        29.06        84.20        55.40        48.89        28.64 
TCGA-04-1654 TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-1661 TCGA-09-1662 
       47.70        29.16        57.73        17.95        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1673 TCGA-09-1674 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
        3.02         8.55        35.15         4.50       112.37        71.11 
TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 TCGA-10-0927 TCGA-10-0928 
       63.09        20.91        26.93        54.31        81.47        18.48 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 TCGA-13-0727 TCGA-13-0755 
       19.86        24.59        39.58         2.73        15.19         2.47 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 
       11.54        34.06        32.25        31.04         8.42        38.93 
TCGA-13-0792 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       36.72        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 
       35.28        35.28        13.61        68.91        91.40        74.27 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0891 TCGA-13-0893 TCGA-13-0899 TCGA-13-0901 
       70.39        61.81        69.01        43.36        56.15        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0908 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 
       47.38        48.33        44.84        34.06        21.14        14.89 
TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 
       13.81         6.41         6.08        10.88         6.61         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        5.92         6.84         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1492 TCGA-13-1494 TCGA-13-1496 TCGA-13-1497 
       70.82        82.88        73.55        38.17         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 
       37.61        38.37        13.97        16.57         4.21         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 
        4.14         2.56         3.88        14.24         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 
       19.07        16.67         2.93         2.66        42.51        40.54 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       26.83        31.73        49.41         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1114 TCGA-23-1116 
        2.24        51.35        54.51         3.22        68.68         4.57 
TCGA-23-1117 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1124 
       33.30       129.96         4.27         6.38        39.09        58.13 
TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 
        0.53       115.89        91.66        77.00         2.76         4.70 
TCGA-23-2645 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        4.50        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1417 TCGA-24-1418 
       22.32        63.55        47.41         6.31         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1428 
        7.86         0.76         6.25         6.02         5.95        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       28.34        19.17        43.53         8.55        72.92        12.46 
TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
       45.14         9.11         3.42        22.19        26.96        57.37 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 
       16.21        56.58        41.06        51.91        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       70.62        39.88        19.53        47.70        25.87        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       17.23        90.15        88.34        48.33        38.24         8.32 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
        3.48         3.72         3.81         4.37        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 
        5.49         9.80        30.21        11.05        81.11       151.99 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       58.16        34.82        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2267 TCGA-24-2280 
       64.01        44.48        57.07        36.16        47.54        70.45 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-25-1312 
       44.58         0.82        67.36        36.23        16.64         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1323 
       26.93        31.99         1.02        34.98        65.00        12.00 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
       18.58        18.02        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 
        0.30        56.94        60.59        35.54        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       18.05        85.05        49.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 
       12.00        45.01        19.99        42.02         2.96        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1695 
       30.97        26.96        44.71        47.18       101.75         0.79 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1705 TCGA-29-1710 
       68.28         0.53        16.90        18.64        18.25        29.23 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 
       34.62        17.00        66.77        62.93        31.23        22.98 
TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       24.36        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1783 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 
        7.20        34.62        86.17        65.00        62.47         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 
       42.25        11.84        11.47         9.76        51.91         2.47 
TCGA-30-1856 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 
       15.68        44.91        34.78         6.08         1.18        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1953 
       30.05        48.79        45.57        30.18        18.77         6.71 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 
       22.85         8.55        30.05        25.74        27.85        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       35.05        33.01        29.49        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2551 
       23.80        21.60        20.98        18.31        20.52        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2590 TCGA-57-1582 TCGA-57-1583 
       11.47        14.30         9.44         7.46        24.03        11.38 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2351 TCGA-59-2352 TCGA-59-2355 TCGA-59-2372 TCGA-61-1721 
       80.12       116.12         9.40         2.14        44.78        11.11 
TCGA-61-1722 TCGA-61-1728 TCGA-61-1730 TCGA-61-1737 TCGA-61-1738 TCGA-61-1741 
        8.05        27.88         4.34        44.84        35.80        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 
       43.69         1.41         8.42         5.79        11.41        13.02 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       31.30        37.02        42.48        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       15.75        38.17         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       30.61        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2097 
        4.80         4.77        51.72        71.74        61.64        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2111 
       65.49        55.50         6.48        76.83        20.68       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88         6.35        31.07         8.58 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.26              0.30 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           109.68            180.16 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           31.300            26.945 
[1] "0.3 - 109.7 (31.3)" "0.3 - 180.2 (26.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D50V2, continuous
D50V3, multiclass
                    clus
vv                   6P LOSS MUTATED 6P LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          133               415
  PERITONEUM (OVARY)               1                 1
D50V4, continuous
D50V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      1  133
  6P LOSS WILD-TYPE    2  416
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                1                 2
  YES             133               416
D50V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED    106   28
  6P LOSS WILD-TYPE  342   76
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO              106               342
  YES              28                76

Clustering(51) Variable = 6q loss mutation analysis
D51V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED   113 122
  6Q LOSS WILD-TYPE 148 163
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              235               311 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              122               163 
$`6Q LOSS MUTATED`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       41.00         1.81         2.01        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1367 TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 TCGA-04-1542 
       65.46        71.47        56.55        19.99        38.37        84.20 
TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 TCGA-09-0365 
       27.88        64.64        36.23        31.86        45.34         9.47 
TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1666 
       17.95        35.54         9.96        38.43        89.33        57.57 
TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
       55.36        17.98         5.85        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0926 TCGA-10-0927 
       35.15        39.75        26.93        12.46        25.91        81.47 
TCGA-10-0935 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0725 
       35.41        15.12         6.21        24.59        44.55        12.39 
TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       31.07        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0793 TCGA-13-0797 TCGA-13-0799 
       32.25        31.04        21.40        28.70         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0884 TCGA-13-0887 
        8.12         8.28         8.19        43.82       107.18        66.64 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 
       61.81        67.99        69.01        57.47        56.15        57.07 
TCGA-13-0901 TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0911 TCGA-13-0913 
       19.36        47.84        44.94        37.08        27.68        29.98 
TCGA-13-0919 TCGA-13-0921 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1410 
       14.89         4.64         6.61         7.36         6.05         4.70 
TCGA-13-1411 TCGA-13-1482 TCGA-13-1483 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 
        4.21        61.71        29.39        52.44        38.17        49.22 
TCGA-13-1497 TCGA-13-1501 TCGA-13-1506 TCGA-13-1512 TCGA-13-2059 TCGA-20-0990 
       54.31        32.84         4.41         3.09        12.23        25.94 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1687 TCGA-23-1021 TCGA-23-1024 TCGA-23-1027 
       27.48        25.38         2.66        47.54        15.39        31.73 
TCGA-23-1028 TCGA-23-1030 TCGA-23-1113 TCGA-23-1118 TCGA-23-1123 TCGA-23-2072 
       49.41        29.10        31.20        86.01        33.47        24.95 
TCGA-23-2078 TCGA-23-2084 TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 TCGA-24-0980 
       87.48        49.84         7.63        11.64        21.80         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 TCGA-24-1416 TCGA-24-1417 TCGA-24-1426 
       22.32        54.08        47.41         6.38         7.82         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 TCGA-24-1466 TCGA-24-1467 
        4.80        17.36        18.67        43.53        45.14       105.99 
TCGA-24-1471 TCGA-24-1546 TCGA-24-1552 TCGA-24-1553 TCGA-24-1556 TCGA-24-1560 
        1.18        64.27        41.39        58.09        70.62        44.09 
TCGA-24-1562 TCGA-24-1567 TCGA-24-1603 TCGA-24-1842 TCGA-24-1845 TCGA-24-1847 
       45.50        17.23        90.15         8.32         3.81        11.28 
TCGA-24-1923 TCGA-24-1927 TCGA-24-2019 TCGA-24-2023 TCGA-24-2036 TCGA-24-2261 
       22.65        16.41         4.87        44.84        64.01         0.79 
TCGA-24-2262 TCGA-24-2271 TCGA-24-2290 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
        0.36        31.63        36.23        33.11        55.86        53.26 
TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 
       51.06        37.02         1.02        34.98        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1634 TCGA-25-2042 TCGA-25-2391 
        2.99        12.00         2.96        35.54        13.02        49.05 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2401 TCGA-25-2409 TCGA-29-1688 TCGA-29-1694 
       12.00        45.01         2.96        26.96        78.87        38.53 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1705 TCGA-29-1707 TCGA-29-1711 TCGA-29-1762 
       33.70        31.17        18.25        41.95        34.62        85.68 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 TCGA-29-1775 TCGA-29-1781 
       39.09        31.23        24.36        22.52        12.36         8.35 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2427 TCGA-29-2428 TCGA-30-1714 TCGA-30-1853 
        5.36        34.62        62.47        45.11        38.07        36.26 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1866 TCGA-30-1880 TCGA-31-1951 TCGA-31-1953 
        0.26        48.07        36.62        57.57        22.45         6.71 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1571 TCGA-36-1574 TCGA-36-1580 TCGA-36-2532 
       44.09         2.17        22.85        22.55        24.23        29.49 
TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 TCGA-36-2548 TCGA-42-2588 
       25.08        21.60         2.24        18.31        14.17         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-59-2348 
        7.56         7.46         7.63        11.38        21.14       180.16 
TCGA-59-2350 TCGA-59-2351 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1724 
       22.32       116.12         2.14         5.39        44.78        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
       31.40        18.54        31.76        28.47        48.79        44.84 
TCGA-61-1740 TCGA-61-1899 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 
        2.43         8.42        13.02         9.07        34.13        37.02 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 TCGA-61-2002 
       48.92        56.58        15.75         1.97         5.52        17.98 
TCGA-61-2003 TCGA-61-2096 TCGA-61-2097 TCGA-61-2104 TCGA-61-2110 TCGA-61-2613 
        3.98        58.39        60.62        76.83        44.52        31.07 
TCGA-61-2614 
        8.58 

$`6Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 
       40.24        49.15        46.62        18.51        11.87        65.49 
TCGA-04-1347 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       63.06        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1371 TCGA-04-1516 TCGA-04-1530 TCGA-04-1536 TCGA-04-1638 TCGA-04-1644 
       82.36        41.59       119.08        29.06        55.40        48.89 
TCGA-04-1648 TCGA-04-1654 TCGA-09-0364 TCGA-09-0366 TCGA-09-1664 TCGA-09-1665 
       28.64        47.70        29.16        57.73        74.89        41.59 
TCGA-09-1667 TCGA-09-1669 TCGA-09-1673 TCGA-09-1674 TCGA-09-2048 TCGA-09-2049 
       61.87        30.48         3.02         8.55         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-10-0925 TCGA-10-0928 TCGA-10-0930 
       71.11        63.09        20.91        54.31        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0936 TCGA-10-0938 TCGA-13-0723 
       32.28        11.70         3.88        35.80        19.86        39.58 
TCGA-13-0724 TCGA-13-0727 TCGA-13-0760 TCGA-13-0761 TCGA-13-0768 TCGA-13-0791 
        2.73        15.19        11.54        34.06         8.42        38.93 
TCGA-13-0792 TCGA-13-0794 TCGA-13-0795 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
       36.72        30.35        19.56        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 TCGA-13-0888 TCGA-13-0893 TCGA-13-0903 
       68.91        91.40        74.27        70.39        43.36        47.38 
TCGA-13-0904 TCGA-13-0908 TCGA-13-0912 TCGA-13-0916 TCGA-13-0920 TCGA-13-0923 
       48.33        44.84        34.06        21.14        13.81         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1408 TCGA-13-1409 TCGA-13-1412 TCGA-13-1477 
        6.08        10.88         5.92         6.84         5.33        54.61 
TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       87.06        98.04        20.68        22.39        70.82        82.88 
TCGA-13-1492 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1504 
       73.55         4.24        37.61        38.37        13.97        16.57 
TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 
        4.21         4.77         4.14         2.56         3.88        14.24 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 
        8.58        10.78         8.75         6.28        23.05        26.20 
TCGA-20-0996 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1022 TCGA-23-1023 
       72.20        19.07        16.67         2.93        42.51        40.54 
TCGA-23-1026 TCGA-23-1029 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
       26.83         8.81        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1119 TCGA-23-1120 
        3.22        68.68         4.57        33.30       129.96         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 
        6.38        39.09        58.13         0.53       115.89        91.66 
TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0968 TCGA-24-0979 
       77.00         2.76         4.70         4.50        19.63        41.56 
TCGA-24-1104 TCGA-24-1413 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
       63.55         6.31         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1430 TCGA-24-1431 TCGA-24-1436 TCGA-24-1463 
        6.02         5.95        28.34        19.17         8.55        72.92 
TCGA-24-1464 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
       12.46         9.11         3.42        22.19        26.96        57.37 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1555 TCGA-24-1557 
       16.21        56.58        41.06        51.91        88.50        39.88 
TCGA-24-1558 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1604 TCGA-24-1614 
       19.53        47.70        25.87        10.26        88.34        48.33 
TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1849 TCGA-24-1850 
       38.24         3.48         3.72         4.37         5.75         5.49 
TCGA-24-1920 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2024 
        9.80        30.21        11.05        81.11       151.99        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 
       44.48        57.07        36.16        47.54        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2293 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 
        0.82        67.36        16.64         1.02        26.93        31.99 
TCGA-25-1319 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
       65.00        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 
        7.86         0.30        56.94        60.59        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       24.99        18.05        85.05         1.02        38.04         3.02 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2404 TCGA-25-2408 TCGA-29-1690 TCGA-29-1691 
       19.99        42.02        29.00        30.97        44.71        47.18 
TCGA-29-1693 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
      101.75         0.79        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 TCGA-29-1769 
       59.67        29.23        17.00        66.77        62.93        22.98 
TCGA-29-1774 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 TCGA-29-2414 
       17.29        11.84        12.30        14.93         7.20        86.17 
TCGA-29-2425 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       65.00         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       51.91         2.47        15.68        44.91        34.78         6.08 
TCGA-30-1867 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        1.18        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1955 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1575 
       18.77        42.51        28.73        29.06        21.53         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       30.05        25.74        27.85        24.69        35.05        33.01 
TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2544 TCGA-36-2547 TCGA-36-2551 
       29.79        25.91        23.80        20.98        20.52        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-57-1582 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       11.47        14.30        24.03         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2352 TCGA-59-2354 TCGA-61-1721 
       25.05        25.02        80.12         9.40        34.39        11.11 
TCGA-61-1722 TCGA-61-1728 TCGA-61-1730 TCGA-61-1738 TCGA-61-1741 TCGA-61-1743 
        8.05        27.88         4.34        35.80        33.67        43.69 
TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1907 TCGA-61-1911 TCGA-61-1915 
        1.41         5.79        11.41        31.30        42.48        67.73 
TCGA-61-1917 TCGA-61-1919 TCGA-61-2000 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       43.43        38.17        14.50        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2109 
       71.74        61.64        65.49        55.50         6.48        20.68 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
      125.72        22.22        51.91        15.88         6.35 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.26              0.30 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           180.16            151.99 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
            29.10             27.88 
[1] "0.3 - 180.2 (29.1)" "0.3 - 152.0 (27.9)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
[1] "hr=" "1"  
D51V2, continuous
D51V3, multiclass
                    clus
vv                   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          235               313
  PERITONEUM (OVARY)               1                 1
D51V4, continuous
D51V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      1  236
  6Q LOSS WILD-TYPE    2  313
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                1                 2
  YES             236               313
D51V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED    194   43
  6Q LOSS WILD-TYPE  254   61
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO              194               254
  YES              43                61

Clustering(52) Variable = 7p loss mutation analysis
D52V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED    39  66
  7P LOSS WILD-TYPE 222 219
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
              105               441 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               66               219 
$`7P LOSS MUTATED`
TCGA-04-1338 TCGA-04-1347 TCGA-04-1349 TCGA-04-1356 TCGA-04-1362 TCGA-04-1536 
       46.62        63.06        21.57        49.28        44.32        29.06 
TCGA-04-1638 TCGA-09-0369 TCGA-09-1659 TCGA-09-1666 TCGA-09-1669 TCGA-09-2045 
       55.40        35.54         9.96        57.57        30.48        35.15 
TCGA-10-0928 TCGA-10-0931 TCGA-10-0935 TCGA-10-0938 TCGA-13-0751 TCGA-13-0758 
       18.48        32.28        35.41        19.86        55.17        11.38 
TCGA-13-0792 TCGA-13-0884 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-1487 
       36.72       107.18        67.99        69.01        57.47        22.39 
TCGA-13-1497 TCGA-20-1685 TCGA-23-1027 TCGA-23-1028 TCGA-23-1109 TCGA-23-1110 
       54.31        16.67        31.73        49.41        51.35        54.51 
TCGA-23-1122 TCGA-23-2078 TCGA-23-2084 TCGA-23-2641 TCGA-24-0982 TCGA-24-1103 
       39.09        87.48        49.84         2.76        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1417 TCGA-24-1425 TCGA-24-1427 TCGA-24-1434 
       63.55        47.41         7.82         5.95         4.80        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1464 TCGA-24-1546 TCGA-24-1548 TCGA-24-1556 
       43.53        72.92        12.46        64.27        16.21        70.62 
TCGA-24-1562 TCGA-24-1567 TCGA-24-1843 TCGA-24-1847 TCGA-24-1930 TCGA-24-2254 
       45.50        17.23         3.48        11.28        81.11        57.07 
TCGA-24-2260 TCGA-24-2262 TCGA-24-2298 TCGA-25-1314 TCGA-25-1317 TCGA-25-1321 
       36.16         0.36        53.26        31.99         1.02        33.96 
TCGA-25-1630 TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-2042 TCGA-25-2391 
        7.86        56.94        60.59        51.22        13.02        49.05 
TCGA-25-2396 TCGA-25-2399 TCGA-29-1691 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
        3.02        19.99        47.18        16.90        18.64        59.67 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1766 TCGA-29-1769 TCGA-29-1776 TCGA-29-1781 
       34.62        17.00        39.09        22.98        11.84         8.35 
TCGA-29-2414 TCGA-29-2431 TCGA-30-1718 TCGA-30-1866 TCGA-30-1887 TCGA-30-1892 
       86.17        42.25        51.91        36.62        24.26        48.79 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-2530 TCGA-42-2589 TCGA-42-2591 
       21.53        22.85        22.55        33.01         7.56         7.63 
TCGA-57-1992 TCGA-57-1993 TCGA-59-2352 TCGA-59-2354 TCGA-59-2363 TCGA-61-1724 
       28.96        25.05         9.40        34.39         5.39        20.94 
TCGA-61-1725 TCGA-61-1740 TCGA-61-1906 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       31.40         2.43        34.13        48.92        56.58        67.73 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2096 
       30.61        39.85        58.39 

$`7P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 
       40.24        41.00         1.81        49.15         2.01        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1350 TCGA-04-1351 TCGA-04-1361 
       11.87        65.49        48.76        63.98        65.46        32.52 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       33.67        76.54        71.47        82.36        56.55        41.59 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1542 TCGA-04-1644 TCGA-04-1646 
       19.99        38.37       119.08        84.20        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-1661 TCGA-09-1662 
       29.16         9.47        57.73        17.95        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 
       74.89        41.59        61.87        55.36        17.98         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2048 
        3.02         8.55        97.55         6.15         6.12         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
      112.37        71.11        63.09        39.75        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0933 
       12.46        54.31        25.91        81.47        33.24        11.70 
TCGA-10-0934 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
        3.88        35.80        15.12         6.21        24.59        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
        2.47        11.18        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 
       21.40         8.42        38.93        28.70        30.35        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 
        8.71         7.79         8.12         8.28         8.19        43.82 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 
       35.28        35.28        13.61        68.91        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0893 TCGA-13-0899 TCGA-13-0900 
       66.64        70.39        61.81        43.36        56.15        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       19.36        47.38        48.33        47.84        44.94        44.84 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 
       37.08        27.68        34.06        29.98        21.14        14.89 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       13.81         4.64         6.41         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 
        7.36         6.05         5.92         6.84         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       20.68        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
       49.22         4.24        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       16.57         4.21         4.41         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        3.88         3.09        14.24        12.23         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 
       27.48        25.38        19.07         2.93         2.66        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1029 TCGA-23-1030 
       42.51        40.54        15.39        26.83         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
       18.87         2.24         3.22        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1123 
       33.30        86.01       129.96         4.27         6.38        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 
       58.13         0.53        24.95       115.89        91.66        77.00 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 
        4.70         4.50         7.63        19.63        11.64        21.80 
TCGA-24-0979 TCGA-24-0980 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 TCGA-24-1419 
       41.56         7.66         6.31         6.38         7.99         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 TCGA-24-1428 TCGA-24-1430 
        0.76         6.25         6.02         5.36        17.36        28.34 
TCGA-24-1431 TCGA-24-1436 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       19.17         8.55        45.14       105.99         9.11         3.42 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1549 TCGA-24-1550 
        1.18        22.19        26.96        57.37        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 
       51.91        41.39        58.09        88.50        39.88        19.53 
TCGA-24-1560 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 
       44.09        47.70        25.87        10.26        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 
       48.33        38.24         8.32         3.72         3.81         4.37 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 
       11.05         4.87       151.99        44.84        58.16        34.82 
TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
      109.68        14.43        53.95        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2261 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
       44.48         0.79        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 
        1.02        26.93        51.06        37.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 
       36.95         2.99        12.00         2.96        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 TCGA-25-1634 TCGA-25-1870 
       15.78         0.36        20.58         0.30        35.54        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 
       24.99        18.05        85.05         1.02        38.04        12.00 
TCGA-25-2398 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       45.01        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       78.87        44.71       101.75        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       31.17        68.28         0.53        18.25        41.95        29.23 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 
       85.68        66.77        62.93        31.23        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 
       17.29        12.36        12.30        14.93         7.20         5.36 
TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2432 
       34.62        65.00        62.47        45.11         4.87        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
       11.47         9.76        38.07        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 
        0.26        48.07        44.91        34.78         6.08         1.18 
TCGA-30-1880 TCGA-30-1891 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       57.57        30.05        45.57        30.18        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
        6.71        42.51        44.09         2.17        28.73        29.06 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
        8.55        30.05        25.74        27.85        24.23        24.69 
TCGA-36-2529 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       35.05        29.49        29.79        25.91        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 
       21.60         2.24        20.98        18.31        20.52        14.17 
TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2590 TCGA-57-1582 
       16.14        11.47        14.30         9.44         7.46        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1994 TCGA-59-2348 
       11.38        21.14         1.74        22.32        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2355 TCGA-59-2372 TCGA-61-1721 
       80.12        22.32       116.12         2.14        44.78        11.11 
TCGA-61-1722 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
        8.05        18.54        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       48.79        44.84        35.80        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 
        8.42         5.79        11.41        13.02         9.07        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       37.02        42.48        43.43        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2012 TCGA-61-2016 
        5.52        14.50        17.98         3.98        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       61.64        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       20.68        44.52       125.72        22.22        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.36              0.26 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
           107.18            180.16 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            34.39             26.83 
[1] "0.4 - 107.2 (34.4)" "0.3 - 180.2 (26.8)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D52V2, continuous
D52V3, multiclass
                    clus
vv                   7P LOSS MUTATED 7P LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          105               443
  PERITONEUM (OVARY)               1                 1
D52V4, continuous
D52V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      0  106
  7P LOSS WILD-TYPE    3  443
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                0                 3
  YES             106               443
D52V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED     86   20
  7P LOSS WILD-TYPE  362   84
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO               86               362
  YES              20                84

Clustering(53) Variable = 7q loss mutation analysis
D53V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED    21  33
  7Q LOSS WILD-TYPE 240 252
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               54               492 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               33               252 
$`7Q LOSS MUTATED`
TCGA-04-1356 TCGA-04-1362 TCGA-04-1638 TCGA-09-0369 TCGA-09-1659 TCGA-10-0928 
       49.28        44.32        55.40        35.54         9.96        18.48 
TCGA-10-0931 TCGA-13-0726 TCGA-13-0751 TCGA-13-0792 TCGA-13-0884 TCGA-13-0889 
       32.28        31.07        55.17        36.72       107.18        61.81 
TCGA-13-0890 TCGA-13-0897 TCGA-13-1487 TCGA-23-1027 TCGA-23-1028 TCGA-24-0982 
       67.99        57.47        22.39        31.73        49.41        22.32 
TCGA-24-1417 TCGA-24-1425 TCGA-24-1426 TCGA-24-1435 TCGA-24-1463 TCGA-24-1469 
        7.82         5.95         5.36        43.53        72.92         9.11 
TCGA-24-1556 TCGA-24-1567 TCGA-24-2260 TCGA-25-1630 TCGA-25-1632 TCGA-25-1633 
       70.62        17.23        36.16         7.86        56.94        60.59 
TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-29-1691 TCGA-29-1702 TCGA-29-1703 
       49.05        38.04         3.02        47.18        18.64        59.67 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 TCGA-29-1776 TCGA-29-1781 
       34.62        17.00        66.77        39.09        11.84         8.35 
TCGA-29-1785 TCGA-29-2431 TCGA-30-1718 TCGA-30-1887 TCGA-31-1959 TCGA-36-1574 
       34.62        42.25        51.91        24.26         2.17        22.55 
TCGA-36-1577 TCGA-42-2591 TCGA-59-2354 TCGA-59-2363 TCGA-61-1914 TCGA-61-2096 
       25.74         7.63        34.39         5.39        56.58        58.39 

$`7Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1361 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 
       63.98        65.46        32.52        33.67        76.54        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       82.36        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       29.06        84.20        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       57.73        17.95        38.43        89.33        74.89        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 
       57.57        61.87        55.36        30.48        17.98         5.85 
TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        3.02         8.55        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        4.50       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 
       26.93        12.46        54.31        25.91        81.47        33.24 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
        6.21        24.59        44.55        39.58         2.73        12.39 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 
       15.19        17.79         2.47        11.18        11.38        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 
       28.70        30.35        19.56         8.71         7.79         8.12 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0891 
       68.91        91.40        74.27        66.64        70.39        69.01 
TCGA-13-0893 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       43.36        56.15        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 
       29.98        21.14        14.89        13.81         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1489 
       61.71        29.39        98.04        20.68        70.82        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       52.44        73.55        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.41         4.77         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
       19.07        16.67         2.93         2.66        47.54        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 
       40.54        15.39        26.83         8.81        29.10        18.87 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 
        2.24        51.35        54.51         3.22        31.20        68.68 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        4.57        33.30        86.01       129.96         4.27         6.38 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 
       39.09        33.47        58.13         0.53        24.95       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
        7.66        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1427 
        7.99         7.86         0.76         6.25         6.02         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1436 TCGA-24-1464 
       17.36        28.34        19.17        18.67         8.55        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
       45.14       105.99         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       41.39        58.09        88.50        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 
       45.50        47.70        25.87        10.26        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       48.33        38.24         8.32         3.48         3.72         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 
       30.21        16.41        11.05        81.11         4.87       151.99 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
       44.84        58.16        34.82       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2261 
       18.48        28.18        64.01        44.48        57.07         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
       67.36        36.23        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1631 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
        0.30        35.54        51.22        14.93        24.99        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2392 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       85.05        13.02         1.02        12.00        45.01        19.99 
TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       42.02         2.96        29.00        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       44.71       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       68.28         0.53        16.90        18.25        41.95        29.23 
TCGA-29-1762 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       85.68        62.93        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 
       17.29        12.36        12.30        14.93         7.20         5.36 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2432 
       86.17        65.00        62.47        45.11         4.87        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
       11.47         9.76        38.07        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 
        0.26        48.07        44.91        34.78         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        1.18        57.57        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 
       18.77        22.45         6.71        42.51        44.09        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 
       29.06        21.53        22.85         8.55        30.05        27.85 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       24.23        24.69        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       25.91        25.08        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       18.31        20.52        14.17        16.14        11.47        14.30 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        9.44         7.56         7.46        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2355 TCGA-59-2372 
       80.12        22.32       116.12         9.40         2.14        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 
       11.11         8.05        20.94        31.40        18.54        27.88 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
        4.34        31.76        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
       11.41        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 
       42.48        48.92        67.73        43.43        15.75        38.17 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
        1.97         5.52        14.50        17.98         3.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       39.85        30.64         1.18        45.96        45.40         4.80 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 
        4.77        51.72        71.74        61.64        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88         6.35        31.07         8.58 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             2.17              0.26 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
           107.18            180.16 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            35.08             27.58 
[1] "2.2 - 107.2 (35.1)" "0.3 - 180.2 (27.6)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D53V2, continuous
D53V3, multiclass
                    clus
vv                   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           53               495
  PERITONEUM (OVARY)               1                 1
D53V4, continuous
D53V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1   53
  7Q LOSS WILD-TYPE    2  496
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                1                 2
  YES              53               496
D53V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED     48    6
  7Q LOSS WILD-TYPE  400   98
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO               48               400
  YES               6                98

Clustering(54) Variable = 8p loss mutation analysis
D54V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED   142 143
  8P LOSS WILD-TYPE 119 142
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              285               261 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              143               142 
$`8P LOSS MUTATED`
TCGA-04-1338 TCGA-04-1346 TCGA-04-1348 TCGA-04-1351 TCGA-04-1361 TCGA-04-1364 
       46.62        65.49        48.76        65.46        32.52        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 
       76.54        71.47        82.36        56.55        41.59        19.99 
TCGA-04-1530 TCGA-04-1638 TCGA-04-1646 TCGA-04-1652 TCGA-04-1654 TCGA-09-0366 
      119.08        55.40        27.88        31.86        47.70        57.73 
TCGA-09-0367 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 
       17.95        38.43        89.33        74.89        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 
       55.36        30.48        17.98         3.02         8.55        97.55 
TCGA-09-2043 TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2056 TCGA-10-0925 
        6.15        71.11        63.09        20.91        12.46        54.31 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0936 TCGA-13-0714 
       81.47        18.48        33.24        32.28        35.80         6.21 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0730 TCGA-13-0757 TCGA-13-0758 
       39.58         2.73        12.39        17.79        11.18        11.38 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 
       34.06        32.25        21.40        36.72        28.70        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 
        8.71         7.79         8.28         8.19        43.82        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0887 TCGA-13-0888 
       35.28        13.61        68.91        91.40        66.64        70.39 
TCGA-13-0890 TCGA-13-0901 TCGA-13-0903 TCGA-13-0906 TCGA-13-0912 TCGA-13-0913 
       67.99        19.36        47.38        44.94        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       21.14        14.89        13.81         6.08        10.88         6.61 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1482 TCGA-13-1483 
        6.05         5.92         4.70         4.21        61.71        29.39 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       22.39        82.88        52.44        38.17        49.22         4.24 
TCGA-13-1498 TCGA-13-1500 TCGA-13-1504 TCGA-13-1505 TCGA-13-1509 TCGA-13-1510 
       37.61        13.97        16.57         4.21         4.14         2.56 
TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-20-0990 TCGA-20-0991 TCGA-20-1682 
       12.23        10.78         8.75        25.94        26.20        27.48 
TCGA-20-1684 TCGA-20-1686 TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1028 
       19.07         2.93        47.54        42.51        15.39        49.41 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1118 TCGA-23-1120 TCGA-23-1123 TCGA-23-1124 
       68.68         4.57        86.01         4.27        33.47        58.13 
TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
      115.89        91.66        77.00         2.76         4.70         4.50 
TCGA-24-0968 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 
       19.63        21.80        41.56         7.66        22.32        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1423 TCGA-24-1424 
       47.41         6.31         6.38         7.82         6.25         6.02 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1431 TCGA-24-1434 TCGA-24-1436 TCGA-24-1464 
        4.80        17.36        19.17        18.67         8.55        12.46 
TCGA-24-1467 TCGA-24-1470 TCGA-24-1544 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
      105.99         3.42        26.96        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1553 TCGA-24-1558 TCGA-24-1567 TCGA-24-1604 TCGA-24-1614 
       41.06        58.09        19.53        17.23        88.34        48.33 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1845 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 
        8.32         3.48         3.81        30.21        11.05        81.11 
TCGA-24-2023 TCGA-24-2024 TCGA-24-2030 TCGA-24-2035 TCGA-24-2254 TCGA-24-2260 
       44.84        58.16        53.95        28.18        57.07        36.16 
TCGA-24-2261 TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2293 
        0.79        47.54        70.45        44.58         0.82        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1318 
       33.11        55.86        26.93        31.99        51.06        34.98 
TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 
       33.96         2.99        12.00         0.36         7.86         0.30 
TCGA-25-1633 TCGA-25-1635 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2392 
       60.59        51.22        24.99        85.05        13.02         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 TCGA-25-2404 
       38.04         3.02        12.00        19.99        42.02        29.00 
TCGA-25-2409 TCGA-29-1693 TCGA-29-1695 TCGA-29-1697 TCGA-29-1698 TCGA-29-1701 
       26.96       101.75         0.79        31.17        68.28        16.90 
TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       18.64        59.67        18.25        41.95        29.23        34.62 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1766 TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 
       17.00        85.68        39.09        24.36        17.29        12.36 
TCGA-29-1777 TCGA-29-1783 TCGA-29-1784 TCGA-29-2414 TCGA-29-2428 TCGA-29-2429 
       12.30         7.20         5.36        86.17        45.11         4.87 
TCGA-29-2434 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1862 
       11.47         2.47        15.68         0.26        44.91         6.08 
TCGA-30-1866 TCGA-30-1887 TCGA-30-1891 TCGA-31-1946 TCGA-31-1950 TCGA-31-1955 
       36.62        24.26        30.05        30.18        18.77        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1577 
       44.09         2.17        22.85        22.55         8.55        25.74 
TCGA-36-1578 TCGA-36-2529 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2542 
       27.85        35.05        29.79        25.91        25.08        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2547 TCGA-36-2552 TCGA-42-2588 TCGA-42-2589 
        2.24        20.98        20.52        11.47         9.44         7.56 
TCGA-42-2590 TCGA-57-1583 TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
        7.46        11.38         1.74        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2355 TCGA-59-2363 
      180.16        22.32       116.12         9.40         2.14         5.39 
TCGA-61-1722 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1737 
        8.05        18.54        27.88         4.34        31.76        44.84 
TCGA-61-1741 TCGA-61-1895 TCGA-61-1904 TCGA-61-1913 TCGA-61-1915 TCGA-61-1918 
       33.67         1.41         9.07        48.92        67.73        15.75 
TCGA-61-2000 TCGA-61-2012 TCGA-61-2016 TCGA-61-2018 TCGA-61-2087 TCGA-61-2097 
       14.50        30.64         1.18        45.40         4.80        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       65.49        55.50         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2613 
      125.72        22.22        31.07 

$`8P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 
       40.24        41.00         1.81        49.15         2.01        18.51 
TCGA-04-1343 TCGA-04-1347 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1362 
       11.87        63.06        21.57        63.98        49.28        44.32 
TCGA-04-1525 TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 
       38.37        29.06        84.20        48.89        28.64        64.64 
TCGA-04-1651 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0369 TCGA-09-1659 
       36.23        45.34        29.16         9.47        35.54         9.96 
TCGA-09-1665 TCGA-09-1672 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
       41.59         5.85         6.12        35.15         4.50       112.37 
TCGA-09-2053 TCGA-09-2055 TCGA-10-0926 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       39.75        26.93        25.91        11.70         3.88        35.41 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0717 TCGA-13-0720 TCGA-13-0726 TCGA-13-0727 
       15.12        19.86        24.59        44.55        31.07        15.19 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0760 TCGA-13-0764 TCGA-13-0768 TCGA-13-0791 
       55.17         2.47        11.54        31.04         8.42        38.93 
TCGA-13-0794 TCGA-13-0800 TCGA-13-0884 TCGA-13-0886 TCGA-13-0889 TCGA-13-0891 
       30.35         8.12       107.18        74.27        61.81        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0904 TCGA-13-0905 
       43.36        57.47        56.15        57.07        48.33        47.84 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0921 TCGA-13-0923 TCGA-13-1405 
       44.84        37.08        27.68         4.64         6.41         7.36 
TCGA-13-1409 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 
        6.84         5.33        54.61        87.06        98.04        20.68 
TCGA-13-1488 TCGA-13-1492 TCGA-13-1497 TCGA-13-1499 TCGA-13-1501 TCGA-13-1506 
       70.82        73.55        54.31        38.37        32.84         4.41 
TCGA-13-1507 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-13-2071 
        4.77         3.88         3.09        14.24         8.58         6.28 
TCGA-20-0987 TCGA-20-0996 TCGA-20-1683 TCGA-20-1685 TCGA-20-1687 TCGA-23-1023 
       23.05        72.20        25.38        16.67         2.66        40.54 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       26.83        31.73         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1117 TCGA-23-1119 
       51.35        54.51         3.22        31.20        33.30       129.96 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1809 TCGA-23-2072 TCGA-23-2078 TCGA-23-2084 
        6.38        39.09         0.53        24.95        87.48        49.84 
TCGA-24-0966 TCGA-24-0970 TCGA-24-1103 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
        7.63        11.64        54.08         7.99         7.86         0.76 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1430 TCGA-24-1435 TCGA-24-1463 TCGA-24-1466 
        5.95         5.36        28.34        43.53        72.92        45.14 
TCGA-24-1469 TCGA-24-1471 TCGA-24-1474 TCGA-24-1545 TCGA-24-1551 TCGA-24-1552 
        9.11         1.18        22.19        57.37        51.91        41.39 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 
       88.50        70.62        39.88        44.09        45.50        47.70 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1616 TCGA-24-1844 TCGA-24-1846 
       25.87        10.26        90.15        38.24         3.72         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 
       11.28         5.75         5.49         9.80        22.65        16.41 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 
        4.87       151.99        34.82       109.68        14.43        18.48 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2262 TCGA-24-2271 TCGA-24-2289 TCGA-24-2290 
       64.01        44.48         0.36        31.63        67.36        36.23 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1316 TCGA-25-1317 TCGA-25-1319 TCGA-25-1320 
       53.26         1.02        37.02         1.02        65.00        36.95 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1632 
        2.96        18.58        18.02        15.78        20.58        56.94 
TCGA-25-1634 TCGA-25-1870 TCGA-25-1877 TCGA-25-2391 TCGA-25-2398 TCGA-25-2401 
       35.54        14.93        18.05        49.05        45.01         2.96 
TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 TCGA-29-1696 
       30.97        78.87        44.71        47.18        38.53        33.70 
TCGA-29-1699 TCGA-29-1763 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 
        0.53        66.77        62.93        31.23        22.98        22.52 
TCGA-29-1776 TCGA-29-1778 TCGA-29-1781 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 
       11.84        14.93         8.35        34.62        65.00        62.47 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 
       42.25        11.84         9.76        38.07        51.91        36.26 
TCGA-30-1859 TCGA-30-1861 TCGA-30-1867 TCGA-30-1880 TCGA-30-1892 TCGA-31-1944 
       48.07        34.78         1.18        57.57        48.79        45.57 
TCGA-31-1951 TCGA-31-1953 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1576 
       22.45         6.71        28.73        29.06        21.53        30.05 
TCGA-36-1580 TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2540 TCGA-36-2545 
       24.23        24.69        33.01        29.49        23.80        18.31 
TCGA-36-2548 TCGA-36-2551 TCGA-42-2582 TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 
       14.17        16.14        14.30         7.63        24.03        21.14 
TCGA-57-1586 TCGA-59-2349 TCGA-59-2354 TCGA-59-2372 TCGA-61-1721 TCGA-61-1724 
       22.32        80.12        34.39        44.78        11.11        20.94 
TCGA-61-1725 TCGA-61-1734 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 
       31.40        28.47        48.79        35.80         2.43        43.69 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 
        8.42         5.79        11.41        13.02        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1914 TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 
       37.02        42.48        56.58        43.43        38.17         1.97 
TCGA-61-1998 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2017 
        5.52        17.98         3.98        30.61        39.85        45.96 
TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2610 
        4.77        51.72        71.74        61.64        58.39        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2614 
       15.88         6.35         8.58 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.26              0.36 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           180.16            151.99 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            25.94             30.35 
[1] "0.3 - 180.2 (25.9)" "0.4 - 152.0 (30.4)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
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"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
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  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D54V2, continuous
D54V3, multiclass
                    clus
vv                   8P LOSS MUTATED 8P LOSS WILD-TYPE
  OMENTUM                          1                 1
  OVARY                          286               262
  PERITONEUM (OVARY)               2                 0
D54V4, continuous
D54V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      2  287
  8P LOSS WILD-TYPE    1  262
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO                2                 1
  YES             287               262
D54V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED    239   50
  8P LOSS WILD-TYPE  209   54
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO              239               209
  YES              50                54

Clustering(55) Variable = 8q loss mutation analysis
D55V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED    35  35
  8Q LOSS WILD-TYPE 226 250
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               70               476 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               35               250 
$`8Q LOSS MUTATED`
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1638 
       71.47        82.36        56.55        41.59        19.99        55.40 
TCGA-04-1655 TCGA-09-0366 TCGA-09-1661 TCGA-09-1667 TCGA-09-2051 TCGA-09-2054 
       45.34        57.73        38.43        61.87        63.09        20.91 
TCGA-09-2056 TCGA-10-0930 TCGA-13-0730 TCGA-13-0757 TCGA-13-0762 TCGA-13-0803 
       12.46        33.24        17.79        11.18        32.25        43.82 
TCGA-13-0885 TCGA-13-0887 TCGA-13-0901 TCGA-13-0904 TCGA-13-0912 TCGA-13-0913 
       91.40        66.64        19.36        48.33        34.06        29.98 
TCGA-13-0916 TCGA-13-0920 TCGA-13-1482 TCGA-13-1510 TCGA-13-2065 TCGA-20-1684 
       21.14        13.81        61.71         2.56         8.75        19.07 
TCGA-23-1021 TCGA-23-2079 TCGA-24-0980 TCGA-24-1423 TCGA-24-1428 TCGA-24-1431 
       47.54        91.66         7.66         6.25        17.36        19.17 
TCGA-24-1548 TCGA-24-1842 TCGA-24-1928 TCGA-24-2024 TCGA-24-2254 TCGA-24-2261 
       16.21         8.32        11.05        58.16        57.07         0.79 
TCGA-24-2267 TCGA-24-2280 TCGA-25-1318 TCGA-25-1630 TCGA-25-1634 TCGA-25-1871 
       47.54        70.45        34.98         7.86        35.54        24.99 
TCGA-25-2393 TCGA-25-2400 TCGA-29-1774 TCGA-29-1775 TCGA-29-2414 TCGA-30-1855 
       38.04        42.02        17.29        12.36        86.17         2.47 
TCGA-30-1860 TCGA-31-1956 TCGA-36-1575 TCGA-36-2537 TCGA-36-2544 TCGA-36-2547 
       44.91        44.09         8.55        25.91        20.98        20.52 
TCGA-36-2551 TCGA-57-1994 TCGA-61-1730 TCGA-61-1733 TCGA-61-1895 TCGA-61-1904 
       16.14        25.02         4.34        31.76         1.41         9.07 
TCGA-61-1915 TCGA-61-2101 TCGA-61-2110 TCGA-61-2113 
       67.73        55.50        44.52        22.22 

$`8Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1644 
       76.54        38.37       119.08        29.06        84.20        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       27.88        28.64        64.64        36.23        31.86        47.70 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 
       29.16         9.47        17.95        35.54         9.96        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       74.89        41.59        57.57        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 
        5.85         3.02         8.55        97.55         6.15         6.12 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 TCGA-09-2055 
       35.15         4.50       112.37        71.11        39.75        26.93 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 
       54.31        25.91        81.47        18.48        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       24.59        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       15.19        55.17         2.47        11.38        11.54        34.06 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 
       30.35        19.56         8.71         7.79         8.12         8.28 
TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
        8.19        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0886 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 
       74.27        70.39        61.81        67.99        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 
       57.47        56.15        57.07        47.38        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 
       44.84        37.08        27.68        14.89         4.64         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        6.84         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 
       29.39        98.04        20.68        22.39        70.82        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       52.44        73.55        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       37.61        38.37        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.41         4.77         4.14         3.88         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
       12.23         8.58        10.78         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 
       26.20        72.20        27.48        25.38        16.67         2.93 
TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
        2.66        42.51        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       54.51         3.22        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 
       58.13         0.53        24.95       115.89        87.48        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       11.64        21.80        41.56        22.32        54.08        63.55 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       47.41         6.31         6.38         7.82         7.99         7.86 
TCGA-24-1422 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 
        0.76         6.02         5.95         5.36         4.80        28.34 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       18.67        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
      105.99         9.11         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       57.37        64.27        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 
       58.09        88.50        70.62        39.88        19.53        44.09 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       45.50        47.70        25.87        10.26        17.23        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 
       88.34        48.33        38.24         3.48         3.72         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        4.37        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 
       30.21        16.41        81.11         4.87       151.99        44.84 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       34.82       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 TCGA-24-2262 TCGA-24-2271 TCGA-24-2281 
       64.01        44.48        36.16         0.36        31.63        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
        0.82        67.36        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       53.26         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
        1.02        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 TCGA-25-1877 
        0.30        56.94        60.59        51.22        14.93        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 
       85.05        13.02        49.05         1.02         3.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       45.01        19.99         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       78.87        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       59.67        18.25        41.95        29.23        34.62        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       85.68        66.77        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       24.36        22.52        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        7.20         5.36        34.62        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
        4.87        42.25        11.84        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1861 
       51.91        36.26        15.68         0.26        48.07        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 
       48.79        45.57        30.18        18.77        22.45         6.71 
TCGA-31-1955 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       42.51         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
       22.55        30.05        25.74        27.85        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 TCGA-36-2540 
       35.05        33.01        29.49        29.79        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 TCGA-36-2548 TCGA-36-2552 TCGA-42-2582 
       21.60         2.24        18.31        14.17        11.47        14.30 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-59-2348 
       21.14         1.74        22.32        28.96        25.05       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        5.39        44.78        11.11         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 
       18.54        27.88        28.47        48.79        44.84        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
        2.43        33.67        43.69         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       13.02        34.13        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       56.58        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 
       71.74        61.64        58.39        60.62        65.49         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       76.83        20.68       125.72        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.79              0.26 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            91.66            180.16 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            30.87             28.26 
[1] "0.8 - 91.7 (30.9)"  "0.3 - 180.2 (28.3)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D55V2, continuous
D55V3, multiclass
                    clus
vv                   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                           70               478
  PERITONEUM (OVARY)               0                 2
D55V4, continuous
D55V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      0   70
  8Q LOSS WILD-TYPE    3  479
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                0                 3
  YES              70               479
D55V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED     58   12
  8Q LOSS WILD-TYPE  390   92
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO               58               390
  YES              12                92

Clustering(56) Variable = 9p loss mutation analysis
D56V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED   108 131
  9P LOSS WILD-TYPE 153 154
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              239               307 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              131               154 
$`9P LOSS MUTATED`
TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
       49.15         2.01        46.62        11.87        65.49        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 
       21.57        63.98        65.46        49.28        32.52        44.32 
TCGA-04-1364 TCGA-04-1371 TCGA-04-1525 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 
       33.67        82.36        38.37        29.06        84.20        55.40 
TCGA-04-1646 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 
       27.88        31.86        45.34        29.16         9.47        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1665 TCGA-09-1667 
       35.54         9.96        38.43        89.33        41.59        61.87 
TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 
       17.98         3.02        97.55         6.12         4.50       112.37 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0926 TCGA-10-0927 
       39.75        20.91        26.93        12.46        25.91        81.47 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0938 TCGA-13-0717 TCGA-13-0762 TCGA-13-0795 
       33.24        32.28        19.86        24.59        32.25        19.56 
TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0886 TCGA-13-0887 
        8.19        35.28        35.28        68.91        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0899 TCGA-13-0901 TCGA-13-0904 
       70.39        61.81        67.99        56.15        19.36        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0921 TCGA-13-0924 TCGA-13-1403 
       47.84        44.94        44.84         4.64         6.08        10.88 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 
        5.92         6.84         4.70         4.21         5.33        87.06 
TCGA-13-1483 TCGA-13-1485 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 
       29.39        20.68        22.39        82.88        52.44        38.17 
TCGA-13-1495 TCGA-13-1498 TCGA-13-1500 TCGA-13-1509 TCGA-13-1512 TCGA-13-2057 
       49.22        37.61        13.97         4.14         3.09        14.24 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-20-1684 TCGA-20-1685 TCGA-23-1021 
        8.58        10.78         8.75        19.07        16.67        47.54 
TCGA-23-1022 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 TCGA-23-1111 
       42.51        31.73        49.41        29.10        18.87         3.22 
TCGA-23-1114 TCGA-23-1119 TCGA-23-1123 TCGA-23-1124 TCGA-23-2081 TCGA-23-2643 
       68.68       129.96        33.47        58.13        77.00         4.70 
TCGA-24-0982 TCGA-24-1105 TCGA-24-1413 TCGA-24-1422 TCGA-24-1426 TCGA-24-1427 
       22.32        47.41         6.31         0.76         5.36         4.80 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1463 TCGA-24-1464 TCGA-24-1545 TCGA-24-1546 
       28.34        19.17        72.92        12.46        57.37        64.27 
TCGA-24-1550 TCGA-24-1560 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       41.06        44.09        17.23        90.15        88.34        48.33 
TCGA-24-1843 TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
        3.48         4.87        44.84        58.16       109.68        14.43 
TCGA-24-2030 TCGA-24-2035 TCGA-24-2036 TCGA-24-2260 TCGA-24-2261 TCGA-24-2295 
       53.95        28.18        64.01        36.16         0.79        33.11 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
        1.02        26.93        31.99        37.02         1.02        34.98 
TCGA-25-1321 TCGA-25-1323 TCGA-25-1625 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 
       33.96        12.00        18.02         0.30        60.59        35.54 
TCGA-25-1870 TCGA-25-1871 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2399 
       14.93        24.99         1.02        38.04        12.00        19.99 
TCGA-25-2401 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1699 TCGA-29-1702 
        2.96       101.75        38.53         0.79         0.53        18.64 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1766 TCGA-29-1770 TCGA-29-1774 
       18.25        41.95        29.23        39.09        24.36        17.29 
TCGA-29-1775 TCGA-29-1783 TCGA-29-2414 TCGA-29-2425 TCGA-29-2431 TCGA-29-2434 
       12.36         7.20        86.17        65.00        42.25        11.47 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 
        9.76        38.07        51.91        36.26        15.68         0.26 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1880 TCGA-30-1891 TCGA-31-1944 TCGA-31-1953 
       34.78        36.62        57.57        30.05        45.57         6.71 
TCGA-31-1955 TCGA-31-1959 TCGA-36-1569 TCGA-36-1571 TCGA-36-1576 TCGA-36-1580 
       42.51         2.17        29.06        22.85        30.05        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2537 TCGA-36-2540 TCGA-36-2543 TCGA-36-2544 
       24.69        35.05        25.91        23.80         2.24        20.98 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2552 TCGA-42-2589 TCGA-42-2590 TCGA-57-1582 
       20.52        14.17        11.47         7.56         7.46        24.03 
TCGA-57-1583 TCGA-57-1585 TCGA-57-1992 TCGA-57-1994 TCGA-59-2351 TCGA-59-2355 
       11.38         1.74        28.96        25.02       116.12         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1727 TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 
        5.39        44.78        18.54         4.34        31.76        48.79 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1900 TCGA-61-1901 TCGA-61-1907 TCGA-61-1910 
       35.80         2.43         5.79        11.41        31.30        37.02 
TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       42.48        56.58        67.73        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       14.50        17.98         3.98        39.85        30.64         1.18 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 
       61.64        58.39        60.62        65.49        55.50         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2113 TCGA-61-2610 TCGA-61-2613 
       76.83        20.68        22.22        51.91        31.07 

$`9P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1342 TCGA-04-1348 TCGA-04-1365 
       40.24        41.00         1.81        18.51        48.76        76.54 
TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1530 TCGA-04-1644 
       71.47        56.55        41.59        19.99       119.08        48.89 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-09-0366 TCGA-09-1664 
       28.64        64.64        36.23        47.70        57.73        74.89 
TCGA-09-1666 TCGA-09-1668 TCGA-09-1669 TCGA-09-1672 TCGA-09-1674 TCGA-09-2043 
       57.57        55.36        30.48         5.85         8.55         6.15 
TCGA-09-2045 TCGA-09-2050 TCGA-09-2051 TCGA-10-0925 TCGA-10-0928 TCGA-10-0933 
       35.15        71.11        63.09        54.31        18.48        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0720 
        3.88        35.41        35.80        15.12         6.21        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       55.17         2.47        11.18        11.38        11.54        34.06 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 
       31.04        21.40         8.42        38.93        36.72        28.70 
TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0803 
       30.35         8.71         7.79         8.12         8.28        43.82 
TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       13.61       107.18        91.40        69.01        43.36        57.47 
TCGA-13-0900 TCGA-13-0903 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       57.07        47.38        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-1404 TCGA-13-1405 
       21.14        14.89        13.81         6.41         6.61         7.36 
TCGA-13-1407 TCGA-13-1477 TCGA-13-1482 TCGA-13-1484 TCGA-13-1488 TCGA-13-1492 
        6.05        54.61        61.71        98.04        70.82        73.55 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
        4.24        54.31        38.37        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1510 TCGA-13-1511 TCGA-13-2059 TCGA-13-2071 
        4.41         4.77         2.56         3.88        12.23         6.28 
TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 
       23.05        25.94        26.20        72.20        27.48        25.38 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1029 
        2.93         2.66        40.54        15.39        26.83         8.81 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 
        2.24        51.35        54.51        31.20         4.57        33.30 
TCGA-23-1118 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1809 TCGA-23-2072 
       86.01         4.27         6.38        39.09         0.53        24.95 
TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 
      115.89        87.48        91.66        49.84         2.76         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 
       54.08        63.55         6.38         7.82         7.99         7.86 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 
        6.25         6.02         5.95        17.36        18.67        43.53 
TCGA-24-1436 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 
        8.55        45.14       105.99         9.11         3.42         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1548 TCGA-24-1549 TCGA-24-1551 TCGA-24-1552 
       22.19        26.96        16.21        56.58        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1562 
       58.09        88.50        70.62        39.88        19.53        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 
       47.70        25.87        10.26        38.24         8.32         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 
        3.81         4.37        11.28         5.75         5.49         9.80 
TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 
       22.65        30.21        16.41        11.05        81.11       151.99 
TCGA-24-2026 TCGA-24-2033 TCGA-24-2038 TCGA-24-2254 TCGA-24-2262 TCGA-24-2267 
       34.82        18.48        44.48        57.07         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
       31.63        70.45        44.58         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1315 TCGA-25-1319 TCGA-25-1320 
       16.64        55.86        53.26        51.06        65.00        36.95 
TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.99         2.96        18.58        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1632 TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 
        7.86        56.94        51.22        18.05        85.05        13.02 
TCGA-25-2391 TCGA-25-2396 TCGA-25-2398 TCGA-25-2400 TCGA-25-2404 TCGA-25-2408 
       49.05         3.02        45.01        42.02        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1696 TCGA-29-1697 
       26.96        78.87        44.71        47.18        33.70        31.17 
TCGA-29-1698 TCGA-29-1701 TCGA-29-1703 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       68.28        16.90        59.67        34.62        17.00        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1776 
       66.77        62.93        31.23        22.98        22.52        11.84 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 TCGA-29-2427 
       12.30        14.93         8.35         5.36        34.62        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2432 TCGA-30-1855 TCGA-30-1859 TCGA-30-1860 
       45.11         4.87        11.84         2.47        48.07        44.91 
TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 TCGA-30-1892 TCGA-31-1946 TCGA-31-1950 
        6.08         1.18        24.26        48.79        30.18        18.77 
TCGA-31-1951 TCGA-31-1956 TCGA-36-1568 TCGA-36-1570 TCGA-36-1574 TCGA-36-1575 
       22.45        44.09        28.73        21.53        22.55         8.55 
TCGA-36-1577 TCGA-36-1578 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 
       25.74        27.85        33.01        29.49        29.79        25.08 
TCGA-36-2542 TCGA-36-2545 TCGA-36-2551 TCGA-42-2582 TCGA-42-2588 TCGA-42-2591 
       21.60        18.31        16.14        14.30         9.44         7.63 
TCGA-57-1584 TCGA-57-1586 TCGA-57-1993 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
       21.14        22.32        25.05       180.16        80.12        22.32 
TCGA-59-2352 TCGA-59-2354 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        9.40        34.39        11.11         8.05        20.94        31.40 
TCGA-61-1728 TCGA-61-1734 TCGA-61-1737 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 
       27.88        28.47        44.84        33.67        43.69         1.41 
TCGA-61-1899 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1913 TCGA-61-1917 
        8.42        13.02         9.07        34.13        48.92        43.43 
TCGA-61-1918 TCGA-61-2008 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       15.75        30.61        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2110 TCGA-61-2111 TCGA-61-2611 TCGA-61-2612 
       51.72        71.74        44.52       125.72        15.88         6.35 
TCGA-61-2614 
        8.58 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.26              0.36 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           129.96            180.16 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            29.23             26.96 
[1] "0.3 - 130.0 (29.2)" "0.4 - 180.2 (27.0)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D56V2, continuous
D56V3, multiclass
                    clus
vv                   9P LOSS MUTATED 9P LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          241               307
  PERITONEUM (OVARY)               2                 0
D56V4, continuous
D56V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      2  241
  9P LOSS WILD-TYPE    1  308
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO                2                 1
  YES             241               308
D56V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED    192   51
  9P LOSS WILD-TYPE  256   53
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO              192               256
  YES              51                53

Clustering(57) Variable = 9q loss mutation analysis
D57V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED   129 140
  9Q LOSS WILD-TYPE 132 145
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              269               277 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              140               145 
$`9Q LOSS MUTATED`
TCGA-04-1332 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 
       41.00        49.15        46.62        11.87        65.49        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 TCGA-04-1364 TCGA-04-1371 
       21.57        63.98        49.28        32.52        33.67        82.36 
TCGA-04-1514 TCGA-04-1517 TCGA-04-1525 TCGA-04-1542 TCGA-04-1638 TCGA-04-1646 
       56.55        19.99        38.37        84.20        55.40        27.88 
TCGA-04-1649 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 
       64.64        45.34        29.16         9.47        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 
        9.96        38.43        61.87        30.48        17.98         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 
        8.55        97.55         6.15         6.12         4.50       112.37 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0927 TCGA-10-0931 
       39.75        20.91        26.93        12.46        81.47        32.28 
TCGA-10-0936 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0751 TCGA-13-0755 
       35.80        19.86         6.21        24.59        55.17         2.47 
TCGA-13-0757 TCGA-13-0762 TCGA-13-0766 TCGA-13-0791 TCGA-13-0793 TCGA-13-0795 
       11.18        32.25        21.40        38.93        28.70        19.56 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 
        8.28        43.82        35.28        35.28        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0899 
       91.40        74.27        66.64        70.39        61.81        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 
       57.07        19.36        48.33        47.84        44.94        44.84 
TCGA-13-0913 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1407 
       29.98         4.64         6.41         6.08        10.88         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1483 TCGA-13-1485 
        5.92         6.84         4.70         4.21        29.39        20.68 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1495 TCGA-13-1498 TCGA-13-1500 
       22.39        82.88        52.44        49.22        37.61        13.97 
TCGA-13-1504 TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 TCGA-13-2060 TCGA-13-2061 
       16.57         4.77         4.14         3.88         8.58        10.78 
TCGA-13-2065 TCGA-20-0990 TCGA-20-1682 TCGA-20-1684 TCGA-20-1686 TCGA-23-1021 
        8.75        25.94        27.48        19.07         2.93        47.54 
TCGA-23-1022 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1111 
       42.51        49.41         8.81        29.10        18.87         3.22 
TCGA-23-1114 TCGA-23-1119 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
       68.68       129.96        33.47        58.13        24.95       115.89 
TCGA-23-2641 TCGA-23-2643 TCGA-24-0968 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 
        2.76         4.70        19.63        21.80        41.56        22.32 
TCGA-24-1105 TCGA-24-1413 TCGA-24-1417 TCGA-24-1422 TCGA-24-1424 TCGA-24-1426 
       47.41         6.31         7.82         0.76         6.02         5.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1436 TCGA-24-1464 TCGA-24-1469 TCGA-24-1471 
       28.34        19.17         8.55        12.46         9.11         1.18 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1550 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       26.96        57.37        41.06        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 
       47.70        90.15        88.34        48.33        38.24         3.48 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 
        3.81         4.37        30.21        81.11         4.87        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
       58.16        34.82        14.43        53.95        18.48        28.18 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2267 TCGA-24-2288 TCGA-24-2295 TCGA-25-1312 
       36.16         0.79        47.54         0.82        33.11         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1321 
       26.93        31.99        37.02         1.02        34.98        33.96 
TCGA-25-1323 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 
       12.00         0.30        60.59        35.54        14.93        24.99 
TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       85.05         1.02        38.04        12.00        45.01        19.99 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1699 TCGA-29-1702 TCGA-29-1710 
      101.75        38.53         0.79         0.53        18.64        29.23 
TCGA-29-1761 TCGA-29-1763 TCGA-29-1766 TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 
       17.00        66.77        39.09        24.36        17.29        12.36 
TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-2414 TCGA-29-2431 TCGA-29-2434 
       12.30         8.35         7.20        86.17        42.25        11.47 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 TCGA-30-1861 
       38.07        51.91        36.26        15.68         0.26        34.78 
TCGA-30-1866 TCGA-30-1880 TCGA-31-1944 TCGA-31-1950 TCGA-31-1953 TCGA-31-1955 
       36.62        57.57        45.57        18.77         6.71        42.51 
TCGA-31-1956 TCGA-36-1569 TCGA-36-1571 TCGA-36-1576 TCGA-36-1580 TCGA-36-1581 
       44.09        29.06        22.85        30.05        24.23        24.69 
TCGA-36-2529 TCGA-36-2537 TCGA-36-2540 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       35.05        25.91        23.80         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2552 TCGA-42-2589 TCGA-42-2590 TCGA-57-1582 TCGA-57-1585 
       20.52        11.47         7.56         7.46        24.03         1.74 
TCGA-57-1992 TCGA-57-1994 TCGA-59-2351 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
       28.96        25.02       116.12         2.14         5.39        44.78 
TCGA-61-1727 TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1741 TCGA-61-1743 
       18.54         4.34        31.76        48.79        33.67        43.69 
TCGA-61-1899 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1914 TCGA-61-1915 
        8.42         9.07        34.13        37.02        56.58        67.73 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2018 TCGA-61-2094 TCGA-61-2095 
       39.85        30.64         1.18        45.40        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       58.39        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2113 TCGA-61-2613 TCGA-61-2614 
       20.68        44.52        22.22        31.07         8.58 

$`9Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1337 TCGA-04-1342 TCGA-04-1348 TCGA-04-1351 
       40.24         1.81         2.01        18.51        48.76        65.46 
TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1516 TCGA-04-1530 TCGA-04-1536 
       44.32        76.54        71.47        41.59       119.08        29.06 
TCGA-04-1644 TCGA-04-1648 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0366 
       48.89        28.64        36.23        31.86        47.70        57.73 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1668 TCGA-09-1672 
       89.33        74.89        41.59        57.57        55.36         5.85 
TCGA-09-2045 TCGA-09-2050 TCGA-09-2051 TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 
       35.15        71.11        63.09        54.31        25.91        18.48 
TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-13-0720 
       33.24        11.70         3.88        35.41        15.12        44.55 
TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       39.58         2.73        12.39        31.07        15.19        17.79 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0768 TCGA-13-0792 
       11.38        11.54        34.06        31.04         8.42        36.72 
TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 TCGA-13-0807 
       30.35         8.71         7.79         8.12         8.19        13.61 
TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0903 TCGA-13-0910 
       67.99        69.01        43.36        57.47        47.38        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-1404 
       27.68        34.06        21.14        14.89        13.81         6.61 
TCGA-13-1405 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 
        7.36         5.33        54.61        87.06        61.71        98.04 
TCGA-13-1488 TCGA-13-1492 TCGA-13-1494 TCGA-13-1496 TCGA-13-1497 TCGA-13-1499 
       70.82        73.55        38.17         4.24        54.31        38.37 
TCGA-13-1501 TCGA-13-1505 TCGA-13-1506 TCGA-13-1510 TCGA-13-1512 TCGA-13-2057 
       32.84         4.21         4.41         2.56         3.09        14.24 
TCGA-13-2059 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 
       12.23         6.28        23.05        26.20        72.20        25.38 
TCGA-20-1685 TCGA-20-1687 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       16.67         2.66        40.54        15.39        26.83        31.73 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1116 TCGA-23-1117 
        2.24        51.35        54.51        31.20         4.57        33.30 
TCGA-23-1118 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1809 TCGA-23-2078 
       86.01         4.27         6.38        39.09         0.53        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2645 TCGA-24-0966 TCGA-24-0970 
       91.66        77.00        49.84         4.50         7.63        11.64 
TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1416 TCGA-24-1418 TCGA-24-1419 
        7.66        54.08        63.55         6.38         7.99         7.86 
TCGA-24-1423 TCGA-24-1425 TCGA-24-1427 TCGA-24-1428 TCGA-24-1434 TCGA-24-1435 
        6.25         5.95         4.80        17.36        18.67        43.53 
TCGA-24-1463 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1474 TCGA-24-1546 
       72.92        45.14       105.99         3.42        22.19        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 
       16.21        56.58        51.91        41.39        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1842 
       70.62        39.88        25.87        10.26        17.23         8.32 
TCGA-24-1844 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        3.72        11.28         5.75         5.49         9.80        22.65 
TCGA-24-1927 TCGA-24-1928 TCGA-24-2020 TCGA-24-2027 TCGA-24-2036 TCGA-24-2038 
       16.41        11.05       151.99       109.68        64.01        44.48 
TCGA-24-2254 TCGA-24-2262 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 
       57.07         0.36        31.63        70.45        44.58        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 TCGA-25-1315 TCGA-25-1319 
       36.23        16.64        55.86        53.26        51.06        65.00 
TCGA-25-1320 TCGA-25-1322 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       36.95         2.99         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1632 TCGA-25-1635 TCGA-25-1877 
        0.36        20.58         7.86        56.94        51.22        18.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2396 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 
       13.02        49.05         3.02        42.02         2.96        29.00 
TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1696 
       30.97        26.96        78.87        44.71        47.18        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1701 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       31.17        68.28        16.90        59.67        18.25        41.95 
TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 
       34.62        85.68        62.93        31.23        22.98        22.52 
TCGA-29-1776 TCGA-29-1778 TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 
       11.84        14.93         5.36        34.62        65.00        62.47 
TCGA-29-2428 TCGA-29-2429 TCGA-29-2432 TCGA-29-2436 TCGA-30-1855 TCGA-30-1859 
       45.11         4.87        11.84         9.76         2.47        48.07 
TCGA-30-1860 TCGA-30-1862 TCGA-30-1867 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       44.91         6.08         1.18        24.26        30.05        48.79 
TCGA-31-1946 TCGA-31-1951 TCGA-31-1959 TCGA-36-1568 TCGA-36-1570 TCGA-36-1574 
       30.18        22.45         2.17        28.73        21.53        22.55 
TCGA-36-1575 TCGA-36-1577 TCGA-36-1578 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
        8.55        25.74        27.85        33.01        29.49        29.79 
TCGA-36-2538 TCGA-36-2542 TCGA-36-2548 TCGA-36-2551 TCGA-42-2582 TCGA-42-2588 
       25.08        21.60        14.17        16.14        14.30         9.44 
TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-57-1586 TCGA-57-1993 TCGA-59-2348 
        7.63        11.38        21.14        22.32        25.05       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 TCGA-61-1721 TCGA-61-1722 
       80.12        22.32         9.40        34.39        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1734 TCGA-61-1737 TCGA-61-1738 
       20.94        31.40        27.88        28.47        44.84        35.80 
TCGA-61-1740 TCGA-61-1895 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1907 
        2.43         1.41         5.79        11.41        13.02        31.30 
TCGA-61-1911 TCGA-61-1913 TCGA-61-1917 TCGA-61-1918 TCGA-61-2008 TCGA-61-2017 
       42.48        48.92        43.43        15.75        30.61        45.96 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 
        4.80         4.77        51.72       125.72        51.91        15.88 
TCGA-61-2612 
        6.35 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.26              0.36 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           129.96            180.16 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            28.34             28.47 
[1] "0.3 - 130.0 (28.3)" "0.4 - 180.2 (28.5)"
       TCGA-04-1331        TCGA-04-1332        TCGA-04-1335        TCGA-04-1336 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1337        TCGA-04-1338        TCGA-04-1342        TCGA-04-1343 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1346        TCGA-04-1347        TCGA-04-1348        TCGA-04-1349 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1350        TCGA-04-1351        TCGA-04-1356        TCGA-04-1361 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-04-1362        TCGA-04-1364        TCGA-04-1365        TCGA-04-1367 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1371        TCGA-04-1514        TCGA-04-1516        TCGA-04-1517 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1525        TCGA-04-1530        TCGA-04-1536        TCGA-04-1542 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-04-1638        TCGA-04-1644        TCGA-04-1646        TCGA-04-1648 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-04-1649        TCGA-04-1651        TCGA-04-1652        TCGA-04-1654 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-04-1655        TCGA-09-0364        TCGA-09-0365        TCGA-09-0366 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-09-0367        TCGA-09-0369        TCGA-09-1659        TCGA-09-1661 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-09-1662        TCGA-09-1664        TCGA-09-1665        TCGA-09-1666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-09-1667        TCGA-09-1668        TCGA-09-1669        TCGA-09-1670 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-09-1672        TCGA-09-1673        TCGA-09-1674        TCGA-09-1675 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-09-2043        TCGA-09-2044        TCGA-09-2045        TCGA-09-2048 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-09-2049        TCGA-09-2050        TCGA-09-2051        TCGA-09-2053 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-09-2054        TCGA-09-2055        TCGA-09-2056        TCGA-10-0925 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-10-0926        TCGA-10-0927        TCGA-10-0928        TCGA-10-0930 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0931        TCGA-10-0933        TCGA-10-0934        TCGA-10-0935 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-10-0936        TCGA-10-0937        TCGA-10-0938        TCGA-13-0714 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-0717        TCGA-13-0720        TCGA-13-0723        TCGA-13-0724 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0725        TCGA-13-0726        TCGA-13-0727        TCGA-13-0730 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-0751        TCGA-13-0755        TCGA-13-0757        TCGA-13-0758 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0760        TCGA-13-0761        TCGA-13-0762        TCGA-13-0764 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0766        TCGA-13-0768        TCGA-13-0791        TCGA-13-0792 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0793        TCGA-13-0794        TCGA-13-0795        TCGA-13-0797 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0799        TCGA-13-0800        TCGA-13-0801        TCGA-13-0802 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0803        TCGA-13-0804        TCGA-13-0805        TCGA-13-0807 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0883        TCGA-13-0884        TCGA-13-0885        TCGA-13-0886 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-0887        TCGA-13-0888        TCGA-13-0889        TCGA-13-0890 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0891        TCGA-13-0893        TCGA-13-0897        TCGA-13-0899 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-0900        TCGA-13-0901        TCGA-13-0903        TCGA-13-0904 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-0905        TCGA-13-0906        TCGA-13-0908        TCGA-13-0910 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0911        TCGA-13-0912        TCGA-13-0913        TCGA-13-0916 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-0919        TCGA-13-0920        TCGA-13-0921        TCGA-13-0923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-0924        TCGA-13-1403        TCGA-13-1404        TCGA-13-1405 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1407        TCGA-13-1408        TCGA-13-1409        TCGA-13-1410 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-1411        TCGA-13-1412        TCGA-13-1477        TCGA-13-1481 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1482        TCGA-13-1483        TCGA-13-1484        TCGA-13-1485 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-1487        TCGA-13-1488        TCGA-13-1489        TCGA-13-1491 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-13-1492        TCGA-13-1494        TCGA-13-1495        TCGA-13-1496 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-13-1497        TCGA-13-1498        TCGA-13-1499        TCGA-13-1500 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-1501        TCGA-13-1504        TCGA-13-1505        TCGA-13-1506 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-13-1507        TCGA-13-1509        TCGA-13-1510        TCGA-13-1511 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-1512        TCGA-13-2057        TCGA-13-2059        TCGA-13-2060 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-13-2061        TCGA-13-2065        TCGA-13-2071        TCGA-20-0987 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-20-0990        TCGA-20-0991        TCGA-20-0996        TCGA-20-1682 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-20-1683        TCGA-20-1684        TCGA-20-1685        TCGA-20-1686 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-20-1687        TCGA-23-1021        TCGA-23-1022        TCGA-23-1023 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-23-1024        TCGA-23-1026        TCGA-23-1027        TCGA-23-1028 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-23-1029        TCGA-23-1030        TCGA-23-1031        TCGA-23-1032 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-23-1109        TCGA-23-1110        TCGA-23-1111        TCGA-23-1113 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-23-1114        TCGA-23-1116        TCGA-23-1117        TCGA-23-1118 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1119        TCGA-23-1120        TCGA-23-1121        TCGA-23-1122 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-1123        TCGA-23-1124        TCGA-23-1809        TCGA-23-2072 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-23-2077        TCGA-23-2078        TCGA-23-2079        TCGA-23-2081 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-23-2084        TCGA-23-2641        TCGA-23-2643        TCGA-23-2645 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-0966        TCGA-24-0968        TCGA-24-0970        TCGA-24-0975 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-0979        TCGA-24-0980        TCGA-24-0982        TCGA-24-1103 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-1104        TCGA-24-1105        TCGA-24-1413        TCGA-24-1416 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-1417        TCGA-24-1418        TCGA-24-1419        TCGA-24-1422 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1423        TCGA-24-1424        TCGA-24-1425        TCGA-24-1426 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1427        TCGA-24-1428        TCGA-24-1430        TCGA-24-1431 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-24-1434        TCGA-24-1435        TCGA-24-1436        TCGA-24-1463 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-1464        TCGA-24-1466        TCGA-24-1467        TCGA-24-1469 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1470        TCGA-24-1471        TCGA-24-1474        TCGA-24-1544 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1545        TCGA-24-1546        TCGA-24-1548        TCGA-24-1549 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1550        TCGA-24-1551        TCGA-24-1552        TCGA-24-1553 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1555        TCGA-24-1556        TCGA-24-1557        TCGA-24-1558 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1560        TCGA-24-1562        TCGA-24-1563        TCGA-24-1564 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-1565        TCGA-24-1567        TCGA-24-1603        TCGA-24-1604 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-24-1614        TCGA-24-1616        TCGA-24-1842        TCGA-24-1843 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-1844        TCGA-24-1845        TCGA-24-1846        TCGA-24-1847 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-1849        TCGA-24-1850        TCGA-24-1920        TCGA-24-1923 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-1924        TCGA-24-1927        TCGA-24-1928        TCGA-24-1930 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-24-2019        TCGA-24-2020        TCGA-24-2023        TCGA-24-2024 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-24-2026        TCGA-24-2027        TCGA-24-2029        TCGA-24-2030 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-24-2033        TCGA-24-2035        TCGA-24-2036        TCGA-24-2038 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2254        TCGA-24-2260        TCGA-24-2261        TCGA-24-2262 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-24-2267        TCGA-24-2271        TCGA-24-2280        TCGA-24-2281 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2288        TCGA-24-2289        TCGA-24-2290        TCGA-24-2293 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-24-2295        TCGA-24-2297        TCGA-24-2298        TCGA-25-1312 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1313        TCGA-25-1314        TCGA-25-1315        TCGA-25-1316 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1317        TCGA-25-1318        TCGA-25-1319        TCGA-25-1320 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-1321        TCGA-25-1322        TCGA-25-1323        TCGA-25-1329 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-1623        TCGA-25-1625        TCGA-25-1626        TCGA-25-1627 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-25-1628        TCGA-25-1630        TCGA-25-1631        TCGA-25-1632 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-1633        TCGA-25-1634        TCGA-25-1635        TCGA-25-1870 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-25-1871        TCGA-25-1877        TCGA-25-1878        TCGA-25-2042 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-2391        TCGA-25-2392        TCGA-25-2393        TCGA-25-2396 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-2397        TCGA-25-2398        TCGA-25-2399        TCGA-25-2400 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-25-2401        TCGA-25-2404        TCGA-25-2408        TCGA-25-2409 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1688        TCGA-29-1690        TCGA-29-1691        TCGA-29-1693 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1694        TCGA-29-1695        TCGA-29-1696        TCGA-29-1697 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1698        TCGA-29-1699        TCGA-29-1701        TCGA-29-1702 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1703        TCGA-29-1705        TCGA-29-1707        TCGA-29-1710 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1711        TCGA-29-1761        TCGA-29-1762        TCGA-29-1763 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1764        TCGA-29-1766        TCGA-29-1768        TCGA-29-1769 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-1770        TCGA-29-1771        TCGA-29-1774        TCGA-29-1775 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-29-1776        TCGA-29-1777        TCGA-29-1778        TCGA-29-1781 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-1783        TCGA-29-1784        TCGA-29-1785        TCGA-29-2414 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-29-2425        TCGA-29-2427        TCGA-29-2428        TCGA-29-2429 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-29-2431        TCGA-29-2432        TCGA-29-2434        TCGA-29-2436 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-30-1714        TCGA-30-1718        TCGA-30-1853        TCGA-30-1855 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-30-1856        TCGA-30-1857        TCGA-30-1859        TCGA-30-1860 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-30-1861        TCGA-30-1862        TCGA-30-1866        TCGA-30-1867 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-30-1880        TCGA-30-1887        TCGA-30-1891        TCGA-30-1892 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-31-1944        TCGA-31-1946        TCGA-31-1950        TCGA-31-1951 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-31-1953        TCGA-31-1955        TCGA-31-1956        TCGA-31-1959 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-36-1568        TCGA-36-1569        TCGA-36-1570        TCGA-36-1571 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-1574        TCGA-36-1575        TCGA-36-1576        TCGA-36-1577 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-36-1578        TCGA-36-1580        TCGA-36-1581        TCGA-36-2529 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-36-2530        TCGA-36-2532        TCGA-36-2534        TCGA-36-2537 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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       TCGA-36-2538        TCGA-36-2540        TCGA-36-2542        TCGA-36-2543 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-36-2544        TCGA-36-2545        TCGA-36-2547        TCGA-36-2548 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-36-2551        TCGA-36-2552        TCGA-42-2582        TCGA-42-2588 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-42-2589        TCGA-42-2590        TCGA-42-2591        TCGA-57-1582 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-57-1583        TCGA-57-1584        TCGA-57-1585        TCGA-57-1586 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-57-1992        TCGA-57-1993        TCGA-57-1994        TCGA-59-2348 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-59-2349        TCGA-59-2350        TCGA-59-2351        TCGA-59-2352 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-59-2354        TCGA-59-2355        TCGA-59-2363        TCGA-59-2372 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-1721        TCGA-61-1722        TCGA-61-1724        TCGA-61-1725 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1727        TCGA-61-1728        TCGA-61-1730        TCGA-61-1733 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-1734        TCGA-61-1736        TCGA-61-1737        TCGA-61-1738 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1740        TCGA-61-1741        TCGA-61-1743        TCGA-61-1895 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-61-1899        TCGA-61-1900        TCGA-61-1901        TCGA-61-1903 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-1904        TCGA-61-1906        TCGA-61-1907        TCGA-61-1910 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-61-1911        TCGA-61-1913        TCGA-61-1914        TCGA-61-1915 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-1917        TCGA-61-1918        TCGA-61-1919        TCGA-61-1995 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-1998        TCGA-61-2000        TCGA-61-2002        TCGA-61-2003 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2008        TCGA-61-2009        TCGA-61-2012        TCGA-61-2016 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2017        TCGA-61-2018        TCGA-61-2087        TCGA-61-2088 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-2092        TCGA-61-2094        TCGA-61-2095        TCGA-61-2096 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2097        TCGA-61-2098        TCGA-61-2101        TCGA-61-2102 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-61-2104        TCGA-61-2109        TCGA-61-2110        TCGA-61-2111 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-61-2113        TCGA-61-2610        TCGA-61-2611        TCGA-61-2612 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-61-2613        TCGA-61-2614 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
[1] "hr=" "1"  
D57V2, continuous
D57V3, multiclass
                    clus
vv                   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  OMENTUM                          0                 2
  OVARY                          272               276
  PERITONEUM (OVARY)               2                 0
D57V4, continuous
D57V5, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      2  272
  9Q LOSS WILD-TYPE    1  277
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                2                 1
  YES             272               277
D57V6, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED    222   52
  9Q LOSS WILD-TYPE  226   52
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO              222               226
  YES              52                52

Clustering(58) Variable = 10p loss mutation analysis
D58V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    44  44
  10P LOSS WILD-TYPE 217 241
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                88                458 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                44                241 
$`10P LOSS MUTATED`
TCGA-04-1364 TCGA-04-1371 TCGA-04-1648 TCGA-09-0364 TCGA-09-0366 TCGA-09-0369 
       33.67        82.36        28.64        29.16        57.73        35.54 
TCGA-09-1675 TCGA-09-2053 TCGA-10-0925 TCGA-10-0938 TCGA-13-0723 TCGA-13-0724 
       97.55        39.75        54.31        19.86        39.58         2.73 
TCGA-13-0725 TCGA-13-0761 TCGA-13-0794 TCGA-13-0889 TCGA-13-0893 TCGA-13-0899 
       12.39        34.06        30.35        61.81        43.36        56.15 
TCGA-13-0904 TCGA-13-0916 TCGA-13-0921 TCGA-13-1408 TCGA-13-1489 TCGA-13-1500 
       48.33        21.14         4.64         5.92        82.88        13.97 
TCGA-13-1507 TCGA-20-1684 TCGA-20-1687 TCGA-23-1119 TCGA-23-1121 TCGA-23-1809 
        4.77        19.07         2.66       129.96         6.38         0.53 
TCGA-23-2078 TCGA-23-2641 TCGA-24-0979 TCGA-24-1104 TCGA-24-1416 TCGA-24-1425 
       87.48         2.76        41.56        63.55         6.38         5.95 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1467 TCGA-24-1471 
       28.34        19.17        18.67        43.53       105.99         1.18 
TCGA-24-1552 TCGA-24-1558 TCGA-24-1567 TCGA-24-1614 TCGA-24-1844 TCGA-24-1849 
       41.39        19.53        17.23        48.33         3.72         5.75 
TCGA-24-1927 TCGA-24-2019 TCGA-24-2024 TCGA-24-2026 TCGA-24-2030 TCGA-24-2254 
       16.41         4.87        58.16        34.82        53.95        57.07 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1625 TCGA-25-1632 TCGA-25-2042 TCGA-25-2393 
       53.26        26.93        18.02        56.94        13.02        38.04 
TCGA-25-2399 TCGA-25-2409 TCGA-29-1694 TCGA-29-1697 TCGA-29-1761 TCGA-29-1768 
       19.99        26.96        38.53        31.17        17.00        31.23 
TCGA-29-1769 TCGA-29-1770 TCGA-30-1714 TCGA-30-1855 TCGA-31-1951 TCGA-31-1959 
       22.98        24.36        38.07         2.47        22.45         2.17 
TCGA-36-1570 TCGA-36-1574 TCGA-36-1577 TCGA-36-2534 TCGA-36-2538 TCGA-36-2544 
       21.53        22.55        25.74        29.79        25.08        20.98 
TCGA-36-2547 TCGA-61-1728 TCGA-61-1734 TCGA-61-1737 TCGA-61-1743 TCGA-61-1895 
       20.52        27.88        28.47        44.84        43.69         1.41 
TCGA-61-1900 TCGA-61-1913 TCGA-61-2096 TCGA-61-2113 
        5.79        48.92        58.39        22.22 

$`10P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 
       63.98        65.46        49.28        32.52        44.32        76.54 
TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       71.47        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1649 
       29.06        84.20        55.40        48.89        27.88        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0365 TCGA-09-0367 
       36.23        31.86        47.70        45.34         9.47        17.95 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
        8.55         6.15         6.12        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0926 
       71.11        63.09        20.91        26.93        12.46        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 
       35.41        35.80        15.12         6.21        24.59        44.55 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       31.07        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.38        11.54        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       38.93        36.72        28.70        19.56         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0890 TCGA-13-0891 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 
       70.39        67.99        69.01        57.47        57.07        19.36 
TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        47.84        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 
       34.06        29.98        14.89        13.81         6.41         6.08 
TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1409 TCGA-13-1410 
       10.88         6.61         7.36         6.05         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       98.04        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       38.17        49.22         4.24        54.31        37.61        38.37 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 
       32.84        16.57         4.21         4.41         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        3.88         3.09        14.24        12.23         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 TCGA-23-1022 
       27.48        25.38        16.67         2.93        47.54        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       29.10        18.87         2.24        51.35        54.51         3.22 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1120 
       31.20        68.68         4.57        33.30        86.01         4.27 
TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 TCGA-23-2079 
       39.09        33.47        58.13        24.95       115.89        91.66 
TCGA-23-2081 TCGA-23-2084 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       77.00        49.84         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 
       11.64        21.80         7.66        22.32        54.08        47.41 
TCGA-24-1413 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.31         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1436 TCGA-24-1463 
        6.02         5.36         4.80        17.36         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 
       12.46        45.14         9.11         3.42        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 
       58.09        88.50        70.62        39.88        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 
       47.70        25.87        10.26        90.15        88.34        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1850 
        8.32         3.48         3.81         4.37        11.28         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 
        9.80        22.65        30.21        11.05        81.11       151.99 
TCGA-24-2023 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
       44.84       109.68        14.43        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       44.48        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       33.11        55.86         1.02        31.99        51.06        37.02 
TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 
        1.02        34.98        65.00        36.95        33.96         2.99 
TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
       12.00         2.96        18.58        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        7.86         0.30        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2391 TCGA-25-2392 TCGA-25-2396 
       24.99        18.05        85.05        49.05         1.02         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       12.00        45.01        42.02         2.96        29.00        30.97 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1695 TCGA-29-1696 
       78.87        44.71        47.18       101.75         0.79        33.70 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 
       68.28         0.53        16.90        18.64        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       41.95        29.23        34.62        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       39.09        22.52        17.29        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       65.00        62.47        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 TCGA-30-1853 TCGA-30-1856 TCGA-30-1857 
       11.47         9.76        51.91        36.26        15.68         0.26 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
       48.07        44.91        34.78         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 
       18.77         6.71        42.51        44.09        28.73        29.06 
TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 
       22.85         8.55        30.05        27.85        24.23        24.69 
TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 
       35.05        33.01        29.49        25.91        23.80        21.60 
TCGA-36-2543 TCGA-36-2545 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
        2.24        18.31        14.17        16.14        11.47        14.30 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
        9.44         7.56         7.46         7.63        24.03        11.38 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
       21.14         1.74        22.32        28.96        25.05        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 
      180.16        80.12        22.32       116.12         9.40        34.39 
TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 
        2.14         5.39        44.78        11.11         8.05        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1738 
       31.40        18.54         4.34        31.76        48.79        35.80 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        2.43        33.67         8.42        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 
       34.13        31.30        37.02        42.48        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 
       17.98         3.98        30.61        39.85        30.64         1.18 
TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 
       45.96        45.40         4.80         4.77        51.72        71.74 
TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       61.64        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       20.68        44.52       125.72        51.91        15.88         6.35 
TCGA-61-2613 TCGA-61-2614 
       31.07         8.58 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.53               0.26 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            129.96             180.16 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            27.420             28.845 
[1] "0.5 - 130.0 (27.4)" "0.3 - 180.2 (28.8)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D58V2, continuous
D58V3, multiclass
                    clus
vv                   10P LOSS MUTATED 10P LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            89                459
  PERITONEUM (OVARY)                0                  2
D58V4, continuous
D58V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      2   87
  10P LOSS WILD-TYPE    1  462
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 2                  1
  YES               87                462
D58V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     76   13
  10P LOSS WILD-TYPE  372   91
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                76                372
  YES               13                 91

Clustering(59) Variable = 10q loss mutation analysis
D59V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    60  57
  10Q LOSS WILD-TYPE 201 228
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               117                429 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                57                228 
$`10Q LOSS MUTATED`
TCGA-04-1343 TCGA-04-1364 TCGA-04-1371 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       11.87        33.67        82.36        48.89        27.88        28.64 
TCGA-04-1649 TCGA-09-0364 TCGA-09-0366 TCGA-09-0369 TCGA-09-1668 TCGA-09-1673 
       64.64        29.16        57.73        35.54        55.36         3.02 
TCGA-09-1675 TCGA-09-2053 TCGA-10-0925 TCGA-10-0935 TCGA-10-0938 TCGA-13-0723 
       97.55        39.75        54.31        35.41        19.86        39.58 
TCGA-13-0725 TCGA-13-0751 TCGA-13-0758 TCGA-13-0761 TCGA-13-0764 TCGA-13-0792 
       12.39        55.17        11.38        34.06        31.04        36.72 
TCGA-13-0794 TCGA-13-0800 TCGA-13-0801 TCGA-13-0807 TCGA-13-0889 TCGA-13-0891 
       30.35         8.12         8.28        13.61        61.81        69.01 
TCGA-13-0893 TCGA-13-0899 TCGA-13-0904 TCGA-13-0911 TCGA-13-0916 TCGA-13-0921 
       43.36        56.15        48.33        27.68        21.14         4.64 
TCGA-13-0923 TCGA-13-1488 TCGA-13-1489 TCGA-13-1496 TCGA-13-1497 TCGA-13-1507 
        6.41        70.82        82.88         4.24        54.31         4.77 
TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 TCGA-23-1032 TCGA-23-1111 TCGA-23-1114 
       19.07         2.93         2.66         2.24         3.22        68.68 
TCGA-23-1119 TCGA-23-1121 TCGA-23-1809 TCGA-23-2078 TCGA-23-2641 TCGA-24-0979 
      129.96         6.38         0.53        87.48         2.76        41.56 
TCGA-24-1104 TCGA-24-1416 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 
       63.55         6.38        28.34        19.17        18.67        43.53 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1471 TCGA-24-1544 TCGA-24-1552 TCGA-24-1557 
       45.14       105.99         1.18        26.96        41.39        39.88 
TCGA-24-1567 TCGA-24-1614 TCGA-24-1844 TCGA-24-1927 TCGA-24-1928 TCGA-24-2026 
       17.23        48.33         3.72        16.41        11.05        34.82 
TCGA-24-2030 TCGA-24-2036 TCGA-24-2254 TCGA-24-2298 TCGA-25-1313 TCGA-25-1329 
       53.95        64.01        57.07        53.26        26.93         2.96 
TCGA-25-1632 TCGA-25-2399 TCGA-25-2409 TCGA-29-1691 TCGA-29-1694 TCGA-29-1761 
       56.94        19.99        26.96        47.18        38.53        17.00 
TCGA-29-1763 TCGA-29-1769 TCGA-29-1770 TCGA-30-1714 TCGA-30-1855 TCGA-30-1856 
       66.77        22.98        24.36        38.07         2.47        15.68 
TCGA-30-1859 TCGA-31-1944 TCGA-31-1951 TCGA-31-1953 TCGA-31-1959 TCGA-36-1570 
       48.07        45.57        22.45         6.71         2.17        21.53 
TCGA-36-1574 TCGA-36-1577 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 TCGA-36-2547 
       22.55        25.74        29.49        29.79        25.08        20.52 
TCGA-36-2551 TCGA-42-2591 TCGA-61-1727 TCGA-61-1728 TCGA-61-1734 TCGA-61-1737 
       16.14         7.63        18.54        27.88        28.47        44.84 
TCGA-61-1738 TCGA-61-1743 TCGA-61-1895 TCGA-61-1913 TCGA-61-2012 TCGA-61-2088 
       35.80        43.69         1.41        48.92        30.64         4.77 
TCGA-61-2094 TCGA-61-2102 TCGA-61-2113 
       71.74         6.48        22.22 

$`10Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       18.51        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 
       65.46        49.28        32.52        44.32        76.54        71.47 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       84.20        55.40        36.23        31.86        47.70        45.34 
TCGA-09-0365 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
        9.47        17.95         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 
       41.59        57.57        61.87        30.48        17.98         5.85 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
        8.55         6.15         6.12        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0926 
       71.11        63.09        20.91        26.93        12.46        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 
       81.47        18.48        33.24        32.28        11.70         3.88 
TCGA-10-0936 TCGA-10-0937 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 
       35.80        15.12         6.21        24.59        44.55         2.73 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0755 TCGA-13-0757 TCGA-13-0760 
       31.07        15.19        17.79         2.47        11.18        11.54 
TCGA-13-0762 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0795 
       32.25        21.40         8.42        38.93        28.70        19.56 
TCGA-13-0797 TCGA-13-0799 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.71         7.79         8.19        43.82        35.28        35.28 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       68.91       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0890 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0905 
       67.99        57.47        57.07        19.36        47.38        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0912 TCGA-13-0913 TCGA-13-0919 
       44.94        44.84        37.08        34.06        29.98        14.89 
TCGA-13-0920 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
       13.81         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        5.92         6.84         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 
       87.06        61.71        29.39        98.04        20.68        22.39 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1498 TCGA-13-1499 
       52.44        73.55        38.17        49.22        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 
       13.97        32.84        16.57         4.21         4.41         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 
        2.56         3.88         3.09        14.24        12.23         8.58 
TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       10.78         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 TCGA-23-1021 TCGA-23-1022 
       72.20        27.48        25.38        16.67        47.54        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 TCGA-23-1116 
       29.10        18.87        51.35        54.51        31.20         4.57 
TCGA-23-1117 TCGA-23-1118 TCGA-23-1120 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
       33.30        86.01         4.27        39.09        33.47        58.13 
TCGA-23-2072 TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2643 
       24.95       115.89        91.66        77.00        49.84         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0980 
        4.50         7.63        19.63        11.64        21.80         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1105 TCGA-24-1413 TCGA-24-1417 TCGA-24-1418 
       22.32        54.08        47.41         6.31         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1469 
        4.80        17.36         8.55        72.92        12.46         9.11 
TCGA-24-1470 TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        3.42        22.19        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 
       41.06        51.91        58.09        88.50        70.62        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 
       44.09        45.50        47.70        25.87        10.26        90.15 
TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1845 TCGA-24-1846 
       88.34        38.24         8.32         3.48         3.81         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 
       11.28         5.75         5.49         9.80        22.65        30.21 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 
       81.11         4.87       151.99        44.84        58.16       109.68 
TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 
       14.43        18.48        28.18        44.48        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 
       67.36        36.23        16.64        33.11        55.86         1.02 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1623 TCGA-25-1625 
       36.95        33.96         2.99        12.00        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 
       15.78         0.36        20.58         7.86         0.30        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       35.54        51.22        14.93        24.99        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 
       13.02        49.05         1.02        38.04         3.02        12.00 
TCGA-25-2398 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-29-1688 
       45.01        42.02         2.96        29.00        30.97        78.87 
TCGA-29-1690 TCGA-29-1693 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
       44.71       101.75         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       29.23        34.62        85.68        62.93        39.09        31.23 
TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       22.52        17.29        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 
       62.47        45.11         4.87        42.25        11.84        11.47 
TCGA-29-2436 TCGA-30-1718 TCGA-30-1853 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 
        9.76        51.91        36.26         0.26        44.91        34.78 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 
        6.08        36.62         1.18        57.57        24.26        30.05 
TCGA-30-1892 TCGA-31-1946 TCGA-31-1950 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 
       48.79        30.18        18.77        42.51        44.09        28.73 
TCGA-36-1569 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 
       29.06        22.85         8.55        30.05        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 
       24.69        35.05        33.01        25.91        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2552 TCGA-42-2582 
        2.24        20.98        18.31        14.17        11.47        14.30 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        9.44         7.56         7.46        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        5.39        44.78        11.11         8.05        20.94        31.40 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1740 TCGA-61-1741 TCGA-61-1899 
        4.34        31.76        48.79         2.43        33.67         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       37.02        42.48        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 
       38.17         1.97         5.52        14.50        17.98         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 
       30.61        39.85         1.18        45.96        45.40         4.80 
TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       51.72        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2610 TCGA-61-2611 
       76.83        20.68        44.52       125.72        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.53               0.26 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            129.96             180.16 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             28.47              28.18 
[1] "0.5 - 130.0 (28.5)" "0.3 - 180.2 (28.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
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        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
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  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
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"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
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        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D59V2, continuous
D59V3, multiclass
                    clus
vv                   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           117                431
  PERITONEUM (OVARY)                0                  2
D59V4, continuous
D59V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      3  114
  10Q LOSS WILD-TYPE    0  435
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 3                  0
  YES              114                435
D59V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED    102   15
  10Q LOSS WILD-TYPE  346   89
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO               102                346
  YES               15                 89

Clustering(60) Variable = 11p loss mutation analysis
D60V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    80 100
  11P LOSS WILD-TYPE 181 185
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               180                366 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               100                185 
$`11P LOSS MUTATED`
TCGA-04-1331 TCGA-04-1338 TCGA-04-1347 TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 
       40.24        46.62        63.06        21.57        65.46        49.28 
TCGA-04-1361 TCGA-04-1365 TCGA-04-1367 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 
       32.52        76.54        71.47        19.99        38.37        29.06 
TCGA-04-1542 TCGA-04-1644 TCGA-04-1648 TCGA-04-1649 TCGA-04-1654 TCGA-09-0366 
       84.20        48.89        28.64        64.64        47.70        57.73 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1666 TCGA-09-1667 TCGA-09-1674 
       35.54         9.96        38.43        57.57        61.87         8.55 
TCGA-09-2044 TCGA-09-2053 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
        6.12        39.75        25.91        81.47        18.48        33.24 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0723 TCGA-13-0725 TCGA-13-0751 TCGA-13-0758 
       15.12        19.86        39.58        12.39        55.17        11.38 
TCGA-13-0764 TCGA-13-0793 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0883 
       31.04        28.70         8.19        43.82        35.28        68.91 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0904 TCGA-13-0913 TCGA-13-0916 
       56.15        57.07        19.36        48.33        29.98        21.14 
TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-1404 TCGA-13-1409 TCGA-13-1477 
       13.81         4.64         6.41         6.61         6.84        54.61 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1487 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 
       61.71        29.39        22.39        38.17        49.22        54.31 
TCGA-13-1500 TCGA-13-1505 TCGA-13-1507 TCGA-13-1512 TCGA-13-2059 TCGA-20-0990 
       13.97         4.21         4.77         3.09        12.23        25.94 
TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 TCGA-23-1027 
       25.38        16.67         2.93         2.66        42.51        31.73 
TCGA-23-1110 TCGA-23-1113 TCGA-23-1114 TCGA-23-1122 TCGA-23-2077 TCGA-23-2081 
       54.51        31.20        68.68        39.09       115.89        77.00 
TCGA-23-2643 TCGA-24-0970 TCGA-24-0975 TCGA-24-1105 TCGA-24-1413 TCGA-24-1418 
        4.70        11.64        21.80        47.41         6.31         7.99 
TCGA-24-1427 TCGA-24-1428 TCGA-24-1435 TCGA-24-1463 TCGA-24-1466 TCGA-24-1470 
        4.80        17.36        43.53        72.92        45.14         3.42 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1549 TCGA-24-1550 TCGA-24-1562 
       22.19        26.96        57.37        56.58        41.06        45.50 
TCGA-24-1567 TCGA-24-1846 TCGA-24-1849 TCGA-24-1920 TCGA-24-1924 TCGA-24-1930 
       17.23         4.37         5.75         9.80        30.21        81.11 
TCGA-24-2019 TCGA-24-2026 TCGA-24-2027 TCGA-24-2254 TCGA-24-2260 TCGA-24-2267 
        4.87        34.82       109.68        57.07        36.16        47.54 
TCGA-24-2280 TCGA-24-2295 TCGA-24-2298 TCGA-25-1318 TCGA-25-1323 TCGA-25-1329 
       70.45        33.11        53.26        34.98        12.00         2.96 
TCGA-25-1631 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-2392 TCGA-25-2393 
        0.30        35.54        14.93        24.99         1.02        38.04 
TCGA-25-2397 TCGA-29-1688 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1702 
       12.00        78.87         0.79        33.70        31.17        18.64 
TCGA-29-1703 TCGA-29-1705 TCGA-29-1711 TCGA-29-1762 TCGA-29-1769 TCGA-29-1770 
       59.67        18.25        34.62        85.68        22.98        24.36 
TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 TCGA-29-2414 TCGA-29-2428 TCGA-29-2431 
       12.30         8.35         5.36        86.17        45.11        42.25 
TCGA-29-2434 TCGA-30-1853 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 TCGA-30-1887 
       11.47        36.26        44.91        34.78        36.62        24.26 
TCGA-31-1950 TCGA-31-1953 TCGA-31-1959 TCGA-36-1577 TCGA-36-1580 TCGA-36-1581 
       18.77         6.71         2.17        25.74        24.23        24.69 
TCGA-36-2537 TCGA-36-2538 TCGA-57-1582 TCGA-57-1585 TCGA-57-1992 TCGA-59-2350 
       25.91        25.08        24.03         1.74        28.96        22.32 
TCGA-59-2354 TCGA-59-2372 TCGA-61-1724 TCGA-61-1725 TCGA-61-1733 TCGA-61-1734 
       34.39        44.78        20.94        31.40        31.76        28.47 
TCGA-61-1743 TCGA-61-1900 TCGA-61-1901 TCGA-61-1906 TCGA-61-1910 TCGA-61-1917 
       43.69         5.79        11.41        34.13        37.02        43.43 
TCGA-61-1919 TCGA-61-2002 TCGA-61-2009 TCGA-61-2012 TCGA-61-2018 TCGA-61-2088 
       38.17        17.98        39.85        30.64        45.40         4.77 
TCGA-61-2094 TCGA-61-2102 TCGA-61-2109 TCGA-61-2111 TCGA-61-2612 TCGA-61-2613 
       71.74         6.48        20.68       125.72         6.35        31.07 

$`11P LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 
       41.00         1.81        49.15         2.01        18.51        11.87 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1350 TCGA-04-1362 TCGA-04-1364 TCGA-04-1371 
       65.49        48.76        63.98        44.32        33.67        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1530 TCGA-04-1638 TCGA-04-1646 TCGA-04-1651 
       56.55        41.59       119.08        55.40        27.88        36.23 
TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-1662 
       31.86        45.34        29.16         9.47        17.95        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 
       74.89        41.59        55.36        30.48        17.98         5.85 
TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
        3.02        97.55         6.15        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 
       71.11        63.09        20.91        26.93        12.46        54.31 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-13-0714 
       32.28        11.70         3.88        35.41        35.80         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 
       24.59        44.55         2.73        31.07        15.19        17.79 
TCGA-13-0755 TCGA-13-0757 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 
        2.47        11.18        11.54        34.06        32.25        21.40 
TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
        8.42        38.93        36.72        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 
        7.79         8.12         8.28        35.28        13.61       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
       91.40        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0903 TCGA-13-0905 TCGA-13-0906 
       69.01        43.36        57.47        47.38        47.84        44.94 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0919 TCGA-13-0924 
       44.84        37.08        27.68        34.06        14.89         6.08 
TCGA-13-1403 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 
       10.88         7.36         6.05         5.92         4.70         4.21 
TCGA-13-1412 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1489 
        5.33        87.06        98.04        20.68        70.82        82.88 
TCGA-13-1491 TCGA-13-1492 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1501 
       52.44        73.55         4.24        37.61        38.37        32.84 
TCGA-13-1504 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 
       16.57         4.41         4.14         2.56         3.88        14.24 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 
        8.58        10.78         8.75         6.28        23.05        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 
       72.20        27.48        19.07        47.54        40.54        15.39 
TCGA-23-1026 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       26.83        49.41         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       51.35         3.22         4.57        33.30        86.01       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 
        4.27         6.38        33.47        58.13         0.53        24.95 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 
       87.48        91.66        49.84         2.76         4.50         7.63 
TCGA-24-0968 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 
       19.63        41.56         7.66        22.32        54.08        63.55 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        6.38         7.82         7.86         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1426 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1436 
        5.95         5.36        28.34        19.17        18.67         8.55 
TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1471 TCGA-24-1546 TCGA-24-1548 
       12.46       105.99         9.11         1.18        64.27        16.21 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 
       19.53        44.09        47.70        25.87        10.26        90.15 
TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       88.34        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1847 TCGA-24-1850 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 
        3.81        11.28         5.49        22.65        16.41        11.05 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 
      151.99        44.84        58.16        14.43        53.95        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 
       28.18        64.01        44.48         0.79         0.36        31.63 
TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 
       44.58         0.82        67.36        36.23        16.64        55.86 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1623 TCGA-25-1625 
       65.00        36.95        33.96         2.99        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1632 TCGA-25-1633 
       15.78         0.36        20.58         7.86        56.94        60.59 
TCGA-25-1635 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2396 
       51.22        18.05        85.05        13.02        49.05         3.02 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1698 
       26.96        44.71        47.18       101.75        38.53        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 
        0.53        16.90        41.95        29.23        17.00        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       62.93        39.09        31.23        22.52        17.29        12.36 
TCGA-29-1776 TCGA-29-1778 TCGA-29-1783 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 
       11.84        14.93         7.20        34.62        65.00        62.47 
TCGA-29-2429 TCGA-29-2432 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 
        4.87        11.84         9.76        38.07        51.91         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 
       15.68         0.26        48.07         6.08         1.18        57.57 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 TCGA-31-1955 
       30.05        48.79        45.57        30.18        22.45        42.51 
TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 
       44.09        28.73        29.06        21.53        22.85        22.55 
TCGA-36-1575 TCGA-36-1576 TCGA-36-1578 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 
        8.55        30.05        27.85        35.05        33.01        29.49 
TCGA-36-2534 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       29.79        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 
       20.52        14.17        16.14        11.47        14.30         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1583 TCGA-57-1584 TCGA-57-1586 
        7.56         7.46         7.63        11.38        21.14        22.32 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2351 TCGA-59-2352 
       25.05        25.02       180.16        80.12       116.12         9.40 
TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 TCGA-61-1727 TCGA-61-1728 
        2.14         5.39        11.11         8.05        18.54        27.88 
TCGA-61-1730 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
        4.34        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 TCGA-61-1911 
        1.41         8.42        13.02         9.07        31.30        42.48 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 TCGA-61-1995 TCGA-61-1998 
       48.92        56.58        67.73        15.75         1.97         5.52 
TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 
       14.50         3.98        30.61         1.18        45.96         4.80 
TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       51.72        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2104 TCGA-61-2110 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2614 
       76.83        44.52        22.22        51.91        15.88         8.58 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.30               0.26 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            125.72             180.16 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             30.84              26.93 
[1] "0.3 - 125.7 (30.8)" "0.3 - 180.2 (26.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D60V2, continuous
D60V3, multiclass
                    clus
vv                   11P LOSS MUTATED 11P LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           182                366
  PERITONEUM (OVARY)                0                  2
D60V4, continuous
D60V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      2  180
  11P LOSS WILD-TYPE    1  369
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 2                  1
  YES              180                369
D60V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED    149   33
  11P LOSS WILD-TYPE  299   71
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO               149                299
  YES               33                 71

Clustering(61) Variable = 11q loss mutation analysis
D61V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    49  70
  11Q LOSS WILD-TYPE 212 215
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               119                427 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                70                215 
$`11Q LOSS MUTATED`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1338 TCGA-04-1356 TCGA-04-1367 TCGA-04-1517 
       40.24         1.81        46.62        49.28        71.47        19.99 
TCGA-04-1536 TCGA-04-1648 TCGA-09-0366 TCGA-09-0369 TCGA-09-1666 TCGA-09-1673 
       29.06        28.64        57.73        35.54        57.57         3.02 
TCGA-09-2044 TCGA-09-2051 TCGA-09-2053 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 
        6.12        63.09        39.75        25.91        81.47        18.48 
TCGA-10-0930 TCGA-10-0937 TCGA-10-0938 TCGA-13-0723 TCGA-13-0730 TCGA-13-0751 
       33.24        15.12        19.86        39.58        17.79        55.17 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0804 TCGA-13-0883 TCGA-13-0891 TCGA-13-0900 
       11.18        11.38        35.28        68.91        69.01        57.07 
TCGA-13-0906 TCGA-13-0913 TCGA-13-0916 TCGA-13-0920 TCGA-13-1409 TCGA-13-1482 
       44.94        29.98        21.14        13.81         6.84        61.71 
TCGA-13-1483 TCGA-13-1487 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1505 
       29.39        22.39        38.17        49.22        54.31         4.21 
TCGA-13-1512 TCGA-20-0990 TCGA-20-1683 TCGA-23-1113 TCGA-23-1114 TCGA-23-1122 
        3.09        25.94        25.38        31.20        68.68        39.09 
TCGA-23-2077 TCGA-23-2081 TCGA-23-2643 TCGA-24-0970 TCGA-24-0979 TCGA-24-0982 
      115.89        77.00         4.70        11.64        41.56        22.32 
TCGA-24-1418 TCGA-24-1463 TCGA-24-1470 TCGA-24-1544 TCGA-24-1562 TCGA-24-1567 
        7.99        72.92         3.42        26.96        45.50        17.23 
TCGA-24-2019 TCGA-24-2254 TCGA-24-2260 TCGA-24-2280 TCGA-24-2295 TCGA-24-2298 
        4.87        57.07        36.16        70.45        33.11        53.26 
TCGA-25-1313 TCGA-25-1319 TCGA-25-1320 TCGA-25-1329 TCGA-25-1627 TCGA-25-1631 
       26.93        65.00        36.95         2.96         0.36         0.30 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2392 TCGA-25-2393 TCGA-29-1688 
       51.22        14.93        24.99         1.02        38.04        78.87 
TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1703 TCGA-29-1705 TCGA-29-1711 
        0.79        33.70        31.17        59.67        18.25        34.62 
TCGA-29-1762 TCGA-29-1769 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1784 
       85.68        22.98        12.30        14.93         8.35         5.36 
TCGA-29-2414 TCGA-29-2428 TCGA-29-2434 TCGA-30-1860 TCGA-30-1861 TCGA-30-1866 
       86.17        45.11        11.47        44.91        34.78        36.62 
TCGA-31-1953 TCGA-36-1571 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2538 
        6.71        22.85        24.23        24.69        35.05        25.08 
TCGA-57-1583 TCGA-57-1992 TCGA-59-2354 TCGA-61-1724 TCGA-61-1725 TCGA-61-1733 
       11.38        28.96        34.39        20.94        31.40        31.76 
TCGA-61-1734 TCGA-61-1743 TCGA-61-1903 TCGA-61-1910 TCGA-61-1911 TCGA-61-1917 
       28.47        43.69        13.02        37.02        42.48        43.43 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2018 TCGA-61-2102 TCGA-61-2111 
       30.64         1.18        45.40         6.48       125.72 

$`11Q LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 
       41.00        49.15         2.01        18.51        11.87        65.49 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1361 
       63.06        48.76        21.57        63.98        65.46        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       44.32        33.67        76.54        82.36        56.55        41.59 
TCGA-04-1525 TCGA-04-1530 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
       38.37       119.08        84.20        55.40        48.89        27.88 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 
        9.47        17.95         9.96        38.43        89.33        74.89 
TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 
       41.59        61.87        55.36        30.48        17.98         5.85 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
        8.55        97.55         6.15        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0931 
       71.11        20.91        26.93        12.46        54.31        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-13-0714 TCGA-13-0717 
       11.70         3.88        35.41        35.80         6.21        24.59 
TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0755 
       44.55         2.73        12.39        31.07        15.19         2.47 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       13.61       107.18        91.40        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0901 
       61.81        67.99        43.36        57.47        56.15        19.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       47.38        48.33        47.84        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       34.06        14.89         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 
        6.61         7.36         6.05         5.92         4.70         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 
        5.33        54.61        87.06        98.04        20.68        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 
       82.88        52.44        73.55         4.24        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       13.97        32.84        16.57         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        2.56         3.88        14.24        12.23         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 
        8.75         6.28        23.05        26.20        72.20        27.48 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 
       19.07        16.67         2.93         2.66        47.54        42.51 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 
       29.10        18.87         2.24        51.35        54.51         3.22 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 
        4.57        33.30        86.01       129.96         4.27         6.38 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 
       33.47        58.13         0.53        24.95        87.48        91.66 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0975 
       49.84         2.76         4.50         7.63        19.63        21.80 
TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
        7.66        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 
        7.82         7.86         0.76         6.25         6.02         5.95 
TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 
        5.36         4.80        17.36        28.34        19.17        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 
       43.53         8.55        12.46        45.14       105.99         9.11 
TCGA-24-1471 TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 
        1.18        22.19        57.37        64.27        16.21        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       41.06        51.91        41.39        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 
       39.88        19.53        44.09        47.70        25.87        10.26 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 
      151.99        44.84        58.16        34.82       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2261 
       53.95        18.48        28.18        64.01        44.48         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 
        0.36        47.54        31.63        44.58         0.82        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 
       36.23        16.64        55.86         1.02        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       37.02         1.02        34.98        33.96         2.99        12.00 
TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 TCGA-25-1632 
       18.58        18.02        15.78        20.58         7.86        56.94 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       60.59        35.54        18.05        85.05        13.02        49.05 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 
       29.00        30.97        26.96        44.71        47.18       101.75 
TCGA-29-1694 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1707 
       38.53        68.28         0.53        16.90        18.64        41.95 
TCGA-29-1710 TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       29.23        17.00        66.77        62.93        39.09        31.23 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1783 
       24.36        22.52        17.29        12.36        11.84         7.20 
TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       34.62        65.00        62.47         4.87        42.25        11.84 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
        9.76        38.07        51.91        36.26         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 
        0.26        48.07         6.08         1.18        57.57        24.26 
TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 
       30.05        48.79        45.57        30.18        18.77        22.45 
TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
       42.51        44.09         2.17        28.73        29.06        21.53 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-2530 
       22.55         8.55        30.05        25.74        27.85        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       29.49        29.79        25.91        23.80        21.60         2.24 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 
       20.98        18.31        20.52        14.17        16.14        11.47 
TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
       14.30         9.44         7.56         7.46         7.63        24.03 
TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
       21.14         1.74        22.32        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2355 TCGA-59-2363 
       80.12        22.32       116.12         9.40         2.14         5.39 
TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
       44.78        11.11         8.05        18.54        27.88         4.34 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 
       48.79        44.84        35.80         2.43        33.67         1.41 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        8.42         5.79        11.41         9.07        34.13        31.30 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 
       48.92        56.58        67.73        15.75        38.17         1.97 
TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
        5.52        14.50        17.98         3.98        30.61        39.85 
TCGA-61-2017 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.96         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 TCGA-61-2109 
       58.39        60.62        65.49        55.50        76.83        20.68 
TCGA-61-2110 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
       44.52        22.22        51.91        15.88         6.35        31.07 
TCGA-61-2614 
        8.58 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.30               0.26 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            125.72             180.16 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             31.17              26.96 
[1] "0.3 - 125.7 (31.2)" "0.3 - 180.2 (27.0)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
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"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D61V2, continuous
D61V3, multiclass
                    clus
vv                   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           119                429
  PERITONEUM (OVARY)                1                  1
D61V4, continuous
D61V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      1  119
  11Q LOSS WILD-TYPE    2  430
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 1                  2
  YES              119                430
D61V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     96   24
  11Q LOSS WILD-TYPE  352   80
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                96                352
  YES               24                 80

Clustering(62) Variable = 12p loss mutation analysis
D62V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED    29  34
  12P LOSS WILD-TYPE 232 251
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                63                483 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                34                251 
$`12P LOSS MUTATED`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1361 TCGA-04-1364 TCGA-04-1638 TCGA-04-1654 
        1.81        49.15        32.52        33.67        55.40        47.70 
TCGA-09-2055 TCGA-13-0720 TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 TCGA-13-0793 
       26.93        44.55        55.17         2.47        11.38        28.70 
TCGA-13-0807 TCGA-13-0891 TCGA-13-0893 TCGA-13-0905 TCGA-13-0908 TCGA-13-0911 
       13.61        69.01        43.36        47.84        44.84        27.68 
TCGA-13-0913 TCGA-13-1403 TCGA-13-1405 TCGA-13-1483 TCGA-13-1491 TCGA-13-1494 
       29.98        10.88         7.36        29.39        52.44        38.17 
TCGA-13-1507 TCGA-13-2061 TCGA-20-0987 TCGA-20-1683 TCGA-20-1687 TCGA-23-1022 
        4.77        10.78        23.05        25.38         2.66        42.51 
TCGA-23-1026 TCGA-23-1028 TCGA-23-1110 TCGA-23-1120 TCGA-23-2072 TCGA-24-0979 
       26.83        49.41        54.51         4.27        24.95        41.56 
TCGA-24-1105 TCGA-24-1422 TCGA-24-1425 TCGA-24-1435 TCGA-24-1471 TCGA-24-1562 
       47.41         0.76         5.95        43.53         1.18        45.50 
TCGA-24-2026 TCGA-24-2254 TCGA-24-2297 TCGA-25-1632 TCGA-25-2397 TCGA-25-2404 
       34.82        57.07        55.86        56.94        12.00        29.00 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1702 TCGA-29-1703 TCGA-29-1711 TCGA-29-1770 
       26.96        78.87        18.64        59.67        34.62        24.36 
TCGA-29-1776 TCGA-29-2427 TCGA-30-1853 TCGA-30-1861 TCGA-36-2538 TCGA-57-1585 
       11.84        62.47        36.26        34.78        25.08         1.74 
TCGA-61-1727 TCGA-61-1910 TCGA-61-2016 
       18.54        37.02         1.18 

$`12P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 TCGA-04-1343 
       40.24        41.00         2.01        46.62        18.51        11.87 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       65.49        63.06        48.76        21.57        63.98        65.46 
TCGA-04-1356 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       49.28        44.32        76.54        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 
       41.59        19.99        38.37       119.08        29.06        84.20 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 
       48.89        27.88        28.64        64.64        36.23        31.86 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       45.34        29.16         9.47        57.73        17.95        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
        9.96        38.43        89.33        74.89        41.59        57.57 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       61.87        55.36        30.48        17.98         5.85         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 
        8.55        97.55         6.15         6.12        35.15         4.50 
TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2056 
      112.37        71.11        63.09        39.75        20.91        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 
       54.31        25.91        81.47        18.48        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 
       11.70         3.88        35.41        35.80        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
        6.21        24.59        39.58         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 
       15.19        17.79        11.18        11.54        34.06        32.25 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0794 
       31.04        21.40         8.42        38.93        36.72        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       19.56         8.71         7.79         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       43.82        35.28        35.28        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0897 
       74.27        66.64        70.39        61.81        67.99        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 
       56.15        57.07        19.36        47.38        48.33        44.94 
TCGA-13-0910 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 
       37.08        34.06        21.14        14.89        13.81         4.64 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
        6.41         6.08         6.61         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 
        4.70         4.21         5.33        54.61        87.06        61.71 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1489 TCGA-13-1492 
       98.04        20.68        22.39        70.82        82.88        73.55 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 
       32.84        16.57         4.21         4.41         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 
        3.88         3.09        14.24        12.23         8.58         8.75 
TCGA-13-2071 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 
        6.28        25.94        26.20        72.20        27.48        19.07 
TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1027 
       16.67         2.93        47.54        40.54        15.39        31.73 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 
        8.81        29.10        18.87         2.24        51.35         3.22 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       31.20        68.68         4.57        33.30        86.01       129.96 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 
        6.38        39.09        33.47        58.13         0.53       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0980 
        4.50         7.63        19.63        11.64        21.80         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       22.32        54.08        63.55         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 
        7.99         7.86         6.25         6.02         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1436 TCGA-24-1463 
       17.36        28.34        19.17        18.67         8.55        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 
       12.46        45.14       105.99         9.11         3.42        22.19 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 
       26.96        57.37        64.27        16.21        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       51.91        41.39        58.09        88.50        70.62        39.88 
TCGA-24-1558 TCGA-24-1560 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 
       19.53        44.09        47.70        25.87        10.26        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 
       90.15        88.34        48.33        38.24         8.32         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.72         3.81         4.37        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
        4.87       151.99        44.84        58.16       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 
       53.95        18.48        28.18        64.01        44.48        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2298 
        0.82        67.36        36.23        16.64        33.11        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 
       34.98        65.00        36.95        33.96         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 
        2.96        18.58        18.02        15.78         0.36        20.58 
TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        7.86         0.30        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 
       24.99        18.05        85.05        13.02        49.05         1.02 
TCGA-25-2393 TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
       38.04         3.02        45.01        19.99        42.02         2.96 
TCGA-25-2408 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       30.97        44.71        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1705 
       33.70        31.17        68.28         0.53        16.90        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       41.95        29.23        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1775 
       39.09        31.23        22.98        22.52        17.29        12.36 
TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 
       12.30        14.93         8.35         7.20         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       86.17        65.00        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 
       11.47         9.76        38.07        51.91         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 
        0.26        48.07        44.91         6.08        36.62         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       28.73        29.06        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 
       30.05        25.74        27.85        24.23        24.69        35.05 
TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 
       33.01        29.49        29.79        25.91        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 
        2.24        20.98        18.31        20.52        14.17        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       11.47        14.30         9.44         7.56         7.46         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 
       24.03        11.38        21.14        22.32        28.96        25.05 
TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 
       25.02       180.16        80.12        22.32       116.12         9.40 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 
       34.39         2.14         5.39        44.78        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 
       20.94        31.40        27.88         4.34        31.76        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       48.79        44.84        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        1.41         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       34.13        31.30        42.48        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2017 
       17.98         3.98        30.61        39.85        30.64        45.96 
TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
       45.40         4.80         4.77        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       58.39        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       20.68        44.52       125.72        22.22        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.76               0.26 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             78.87             180.16 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             29.98              27.88 
[1] "0.8 - 78.9 (30.0)"  "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D62V2, continuous
D62V3, multiclass
                    clus
vv                   12P LOSS MUTATED 12P LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            63                485
  PERITONEUM (OVARY)                0                  2
D62V4, continuous
D62V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      0   63
  12P LOSS WILD-TYPE    3  486
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 0                  3
  YES               63                486
D62V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     55    8
  12P LOSS WILD-TYPE  393   96
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                55                393
  YES                8                 96

Clustering(63) Variable = 12q loss mutation analysis
D63V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED    48  50
  12Q LOSS WILD-TYPE 213 235
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                98                448 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                50                235 
$`12Q LOSS MUTATED`
TCGA-04-1335 TCGA-04-1356 TCGA-04-1361 TCGA-04-1542 TCGA-04-1638 TCGA-04-1651 
        1.81        49.28        32.52        84.20        55.40        36.23 
TCGA-09-1661 TCGA-09-1668 TCGA-09-1675 TCGA-09-2044 TCGA-13-0720 TCGA-13-0726 
       38.43        55.36        97.55         6.12        44.55        31.07 
TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 TCGA-13-0792 TCGA-13-0793 TCGA-13-0801 
       55.17         2.47        11.38        36.72        28.70         8.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0891 TCGA-13-0893 
       35.28        13.61        68.91        91.40        69.01        43.36 
TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0911 TCGA-13-0913 
       47.38        48.33        47.84        44.84        27.68        29.98 
TCGA-13-0919 TCGA-13-0923 TCGA-13-1405 TCGA-13-1410 TCGA-13-1411 TCGA-13-1483 
       14.89         6.41         7.36         4.70         4.21        29.39 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1507 TCGA-13-2059 TCGA-20-0987 TCGA-20-1687 
       82.88        52.44         4.77        12.23        23.05         2.66 
TCGA-23-1026 TCGA-23-1117 TCGA-23-1120 TCGA-23-2072 TCGA-23-2077 TCGA-24-0980 
       26.83        33.30         4.27        24.95       115.89         7.66 
TCGA-24-0982 TCGA-24-1105 TCGA-24-1422 TCGA-24-1425 TCGA-24-1431 TCGA-24-1466 
       22.32        47.41         0.76         5.95        19.17        45.14 
TCGA-24-1471 TCGA-24-1557 TCGA-24-1604 TCGA-24-1614 TCGA-24-1920 TCGA-24-1927 
        1.18        39.88        88.34        48.33         9.80        16.41 
TCGA-24-2023 TCGA-24-2026 TCGA-24-2254 TCGA-24-2297 TCGA-25-1314 TCGA-25-2397 
       44.84        34.82        57.07        55.86        31.99        12.00 
TCGA-25-2404 TCGA-25-2409 TCGA-29-1688 TCGA-29-1694 TCGA-29-1702 TCGA-29-1703 
       29.00        26.96        78.87        38.53        18.64        59.67 
TCGA-29-1711 TCGA-29-1763 TCGA-29-1775 TCGA-29-1776 TCGA-29-2427 TCGA-29-2432 
       34.62        66.77        12.36        11.84        62.47        11.84 
TCGA-30-1853 TCGA-30-1857 TCGA-30-1861 TCGA-30-1891 TCGA-31-1956 TCGA-36-2537 
       36.26         0.26        34.78        30.05        44.09        25.91 
TCGA-36-2538 TCGA-42-2591 TCGA-57-1584 TCGA-59-2350 TCGA-61-1727 TCGA-61-1734 
       25.08         7.63        21.14        22.32        18.54        28.47 
TCGA-61-1895 TCGA-61-1903 TCGA-61-1910 TCGA-61-1913 TCGA-61-1919 TCGA-61-2016 
        1.41        13.02        37.02        48.92        38.17         1.18 
TCGA-61-2018 TCGA-61-2104 
       45.40        76.83 

$`12Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       65.46        44.32        33.67        76.54        71.47        82.36 
TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       56.55        41.59        19.99        38.37       119.08        29.06 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1652 TCGA-04-1654 
       48.89        27.88        28.64        64.64        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 
       45.34        29.16         9.47        57.73        17.95        35.54 
TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
        9.96        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-2043 
       30.48        17.98         5.85         3.02         8.55         6.15 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
       35.15         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       20.91        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       18.48        33.24        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0723 
       35.80        15.12        19.86         6.21        24.59        39.58 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 TCGA-13-0760 
        2.73        12.39        15.19        17.79        11.18        11.54 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 
       34.06        32.25        31.04        21.40         8.42        38.93 
TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 
       30.35        19.56         8.71         7.79         8.12         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
       43.82        35.28       107.18        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0890 TCGA-13-0897 TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 
       61.81        67.99        57.47        56.15        57.07        19.36 
TCGA-13-0906 TCGA-13-0910 TCGA-13-0912 TCGA-13-0916 TCGA-13-0920 TCGA-13-0921 
       44.94        37.08        34.06        21.14        13.81         4.64 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
        6.08        10.88         6.61         6.05         5.92         6.84 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 
        5.33        54.61        87.06        61.71        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       22.39        70.82        73.55        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 
       54.31        37.61        38.37        13.97        32.84        16.57 
TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
        4.21         4.41         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 
       14.24         8.58        10.78         8.75         6.28        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 
       26.20        72.20        27.48        25.38        19.07        16.67 
TCGA-20-1686 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1027 
        2.93        47.54        42.51        40.54        15.39        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1118 
       54.51         3.22        31.20        68.68         4.57        86.01 
TCGA-23-1119 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 
      129.96         6.38        39.09        33.47        58.13         0.53 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       54.08        63.55         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1423 TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        7.86         6.25         6.02         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 
       28.34        18.67        43.53         8.55        72.92        12.46 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
      105.99         9.11         3.42        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       64.27        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       58.09        88.50        70.62        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1616 
       47.70        25.87        10.26        17.23        90.15        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 
        8.32         3.48         3.72         3.81         4.37        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1923 TCGA-24-1924 TCGA-24-1928 TCGA-24-1930 
        5.75         5.49        22.65        30.21        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 
        4.87       151.99        58.16       109.68        14.43        53.95 
TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2260 TCGA-24-2261 
       18.48        28.18        64.01        44.48        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
        0.36        47.54        31.63        70.45        44.58         0.82 
TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2298 TCGA-25-1312 
       67.36        36.23        16.64        33.11        53.26         1.02 
TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       26.93        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       36.95        33.96         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       18.05        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 
        3.02        45.01        19.99        42.02         2.96        30.97 
TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       44.71        47.18       101.75         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       68.28         0.53        16.90        18.25        41.95        29.23 
TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 
       17.00        85.68        62.93        39.09        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       24.36        22.52        17.29        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 
        7.20         5.36        34.62        86.17        65.00        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
        4.87        42.25        11.47         9.76        38.07        51.91 
TCGA-30-1855 TCGA-30-1856 TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 
        2.47        15.68        48.07        44.91         6.08        36.62 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
        1.18        57.57        24.26        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1959 TCGA-36-1568 
       18.77        22.45         6.71        42.51         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 
       29.06        21.53        22.85        22.55         8.55        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       25.74        27.85        24.23        24.69        35.05        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 
       29.49        29.79        23.80        21.60         2.24        20.98 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       18.31        20.52        14.17        16.14        11.47        14.30 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 
        9.44         7.56         7.46        24.03        11.38         1.74 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       22.32        28.96        25.05        25.02       180.16        80.12 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
      116.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 
       11.11         8.05        20.94        31.40        27.88         4.34 
TCGA-61-1733 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 
       31.76        48.79        44.84        35.80         2.43        33.67 
TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1904 TCGA-61-1906 
       43.69         8.42         5.79        11.41         9.07        34.13 
TCGA-61-1907 TCGA-61-1911 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       31.30        42.48        56.58        67.73        43.43        15.75 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 
        1.97         5.52        14.50        17.98         3.98        30.61 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2017 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
       39.85        30.64        45.96         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       71.74        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 
        6.48        20.68        44.52       125.72        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       15.88         6.35        31.07         8.58 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.26               0.30 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            115.89             180.16 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             30.56              27.22 
[1] "0.3 - 115.9 (30.6)" "0.3 - 180.2 (27.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
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        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
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"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
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        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D63V2, continuous
D63V3, multiclass
                    clus
vv                   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            99                449
  PERITONEUM (OVARY)                0                  2
D63V4, continuous
D63V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      0   99
  12Q LOSS WILD-TYPE    3  450
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 0                  3
  YES               99                450
D63V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED     83   16
  12Q LOSS WILD-TYPE  365   88
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                83                365
  YES               16                 88

Clustering(64) Variable = 13q loss mutation analysis
D64V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED   123 139
  13Q LOSS WILD-TYPE 138 146
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               262                284 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               139                146 
$`13Q LOSS MUTATED`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1342 TCGA-04-1343 TCGA-04-1347 TCGA-04-1349 
        1.81        49.15        18.51        11.87        63.06        21.57 
TCGA-04-1361 TCGA-04-1365 TCGA-04-1367 TCGA-04-1514 TCGA-04-1525 TCGA-04-1536 
       32.52        76.54        71.47        56.55        38.37        29.06 
TCGA-04-1638 TCGA-04-1646 TCGA-04-1648 TCGA-04-1651 TCGA-04-1652 TCGA-09-0366 
       55.40        27.88        28.64        36.23        31.86        57.73 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 
       35.54         9.96        38.43        57.57        61.87        55.36 
TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 TCGA-09-2044 TCGA-09-2050 TCGA-09-2051 
       17.98         3.02         8.55         6.12        71.11        63.09 
TCGA-09-2054 TCGA-09-2055 TCGA-10-0925 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 
       20.91        26.93        54.31        81.47        33.24        32.28 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0717 TCGA-13-0720 TCGA-13-0725 
       35.80        15.12        19.86        24.59        44.55        12.39 
TCGA-13-0726 TCGA-13-0751 TCGA-13-0755 TCGA-13-0758 TCGA-13-0764 TCGA-13-0766 
       31.07        55.17         2.47        11.38        31.04        21.40 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0797 TCGA-13-0799 TCGA-13-0802 TCGA-13-0804 
       36.72        28.70         8.71         7.79         8.19        35.28 
TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0890 TCGA-13-0891 
       35.28        13.61        68.91        91.40        67.99        69.01 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0910 TCGA-13-0916 TCGA-13-0919 
       57.07        19.36        47.38        37.08        21.14        14.89 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1404 TCGA-13-1409 TCGA-13-1482 TCGA-13-1483 
        6.41         6.08         6.61         6.84        61.71        29.39 
TCGA-13-1487 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 TCGA-13-1500 
       22.39        73.55        38.17        49.22        54.31        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       32.84        16.57         4.21         4.14         2.56         3.88 
TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0991 TCGA-20-1682 
       12.23        10.78         8.75         6.28        26.20        27.48 
TCGA-20-1684 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1027 TCGA-23-1029 
       19.07        47.54        40.54        15.39        31.73         8.81 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1114 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 
       18.87         2.24        68.68        33.30        86.01       129.96 
TCGA-23-1123 TCGA-23-1124 TCGA-23-2077 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
       33.47        58.13       115.89        77.00        49.84         2.76 
TCGA-23-2643 TCGA-23-2645 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 
        4.70         4.50         7.66        54.08        63.55        47.41 
TCGA-24-1413 TCGA-24-1417 TCGA-24-1419 TCGA-24-1424 TCGA-24-1425 TCGA-24-1428 
        6.31         7.82         7.86         6.02         5.95        17.36 
TCGA-24-1435 TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 TCGA-24-1474 TCGA-24-1544 
       43.53        12.46        45.14         9.11        22.19        26.96 
TCGA-24-1545 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 
       57.37        16.21        56.58        41.06        51.91        41.39 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 TCGA-24-1560 TCGA-24-1563 TCGA-24-1567 
       88.50        70.62        19.53        44.09        47.70        17.23 
TCGA-24-1603 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 
       90.15        48.33        38.24         8.32         3.48         3.72 
TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1850 TCGA-24-1927 TCGA-24-2023 
        3.81         4.37        11.28         5.49        16.41        44.84 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2030 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 
       58.16        34.82        53.95        57.07        36.16         0.79 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2289 TCGA-24-2290 TCGA-25-1313 TCGA-25-1315 
        0.36        47.54        67.36        36.23        26.93        51.06 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1627 TCGA-25-1631 TCGA-25-1633 
       34.98        65.00        33.96         0.36         0.30        60.59 
TCGA-25-1635 TCGA-25-1878 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 
       51.22        85.05        49.05         1.02        38.04         3.02 
TCGA-25-2397 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 
       12.00        19.99        42.02         2.96        29.00        26.96 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 
       47.18       101.75        33.70        31.17        68.28         0.53 
TCGA-29-1703 TCGA-29-1707 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 
       59.67        41.95        85.68        66.77        62.93        39.09 
TCGA-29-1768 TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 TCGA-29-1781 
       31.23        22.52        12.36        11.84        14.93         8.35 
TCGA-29-1784 TCGA-29-2414 TCGA-29-2427 TCGA-29-2431 TCGA-29-2432 TCGA-30-1860 
        5.36        86.17        62.47        42.25        11.84        44.91 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1891 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       34.78        36.62        30.05         6.71        42.51        44.09 
TCGA-36-1569 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1578 TCGA-36-1580 
       29.06        22.85        22.55         8.55        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2534 TCGA-36-2542 TCGA-36-2543 TCGA-36-2545 
       24.69        35.05        29.79        21.60         2.24        18.31 
TCGA-42-2582 TCGA-42-2591 TCGA-57-1584 TCGA-57-1992 TCGA-59-2350 TCGA-59-2351 
       14.30         7.63        21.14        28.96        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2372 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        9.40        34.39        44.78         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1730 TCGA-61-1733 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       18.54         4.34        31.76        44.84        35.80         2.43 
TCGA-61-1743 TCGA-61-1901 TCGA-61-1906 TCGA-61-1907 TCGA-61-1913 TCGA-61-1914 
       43.69        11.41        34.13        31.30        48.92        56.58 
TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-2002 TCGA-61-2008 
       67.73        15.75        38.17         1.97        17.98        30.61 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2096 
       30.64         1.18        45.40         4.80         4.77        58.39 
TCGA-61-2097 TCGA-61-2113 TCGA-61-2610 TCGA-61-2614 
       60.62        22.22        51.91         8.58 

$`13Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1337 TCGA-04-1338 TCGA-04-1346 TCGA-04-1348 
       40.24        41.00         2.01        46.62        65.49        48.76 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 TCGA-04-1371 
       63.98        65.46        49.28        44.32        33.67        82.36 
TCGA-04-1516 TCGA-04-1517 TCGA-04-1530 TCGA-04-1542 TCGA-04-1644 TCGA-04-1649 
       41.59        19.99       119.08        84.20        48.89        64.64 
TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-1662 
       47.70        45.34        29.16         9.47        17.95        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1669 TCGA-09-1672 TCGA-09-1675 TCGA-09-2043 
       74.89        41.59        30.48         5.85        97.55         6.15 
TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2053 TCGA-09-2056 TCGA-10-0926 
       35.15         4.50       112.37        39.75        12.46        25.91 
TCGA-10-0928 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-13-0714 TCGA-13-0723 
       18.48        11.70         3.88        35.41         6.21        39.58 
TCGA-13-0724 TCGA-13-0727 TCGA-13-0730 TCGA-13-0757 TCGA-13-0760 TCGA-13-0761 
        2.73        15.19        17.79        11.18        11.54        34.06 
TCGA-13-0762 TCGA-13-0768 TCGA-13-0791 TCGA-13-0794 TCGA-13-0795 TCGA-13-0800 
       32.25         8.42        38.93        30.35        19.56         8.12 
TCGA-13-0801 TCGA-13-0803 TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 
        8.28        43.82       107.18        74.27        66.64        70.39 
TCGA-13-0889 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0904 TCGA-13-0905 
       61.81        43.36        57.47        56.15        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0920 
       44.94        44.84        27.68        34.06        29.98        13.81 
TCGA-13-0921 TCGA-13-1403 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 
        4.64        10.88         7.36         6.05         5.92         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1484 TCGA-13-1485 
        4.21         5.33        54.61        87.06        98.04        20.68 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 
       70.82        82.88        52.44         4.24        37.61        38.37 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-20-0987 
        4.41         4.77         3.09        14.24         8.58        23.05 
TCGA-20-0990 TCGA-20-0996 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       25.94        72.20        25.38        16.67         2.93         2.66 
TCGA-23-1022 TCGA-23-1026 TCGA-23-1028 TCGA-23-1030 TCGA-23-1109 TCGA-23-1110 
       42.51        26.83        49.41        29.10        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1116 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 
        3.22        31.20         4.57         4.27         6.38        39.09 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 TCGA-24-0966 TCGA-24-0968 
        0.53        24.95        87.48        91.66         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1416 TCGA-24-1418 
       11.64        21.80        41.56        22.32         6.38         7.99 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 
        0.76         6.25         5.36         4.80        28.34        19.17 
TCGA-24-1434 TCGA-24-1436 TCGA-24-1463 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 
       18.67         8.55        72.92       105.99         3.42         1.18 
TCGA-24-1546 TCGA-24-1553 TCGA-24-1557 TCGA-24-1562 TCGA-24-1564 TCGA-24-1565 
       64.27        58.09        39.88        45.50        25.87        10.26 
TCGA-24-1604 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1928 
       88.34         5.75         9.80        22.65        30.21        11.05 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 
       81.11         4.87       151.99       109.68        14.43        18.48 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
       28.18        64.01        44.48        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
        0.82        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1314 TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 
       31.99        37.02         1.02        36.95         2.99        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 TCGA-25-1628 TCGA-25-1630 
        2.96        18.58        18.02        15.78        20.58         7.86 
TCGA-25-1632 TCGA-25-1634 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-2042 
       56.94        35.54        14.93        24.99        18.05        13.02 
TCGA-25-2398 TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1694 TCGA-29-1695 
       45.01        30.97        78.87        44.71        38.53         0.79 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       16.90        18.64        18.25        29.23        34.62        17.00 
TCGA-29-1769 TCGA-29-1770 TCGA-29-1774 TCGA-29-1777 TCGA-29-1783 TCGA-29-1785 
       22.98        24.36        17.29        12.30         7.20        34.62 
TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 
       65.00        45.11         4.87        11.47         9.76        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       51.91        36.26         2.47        15.68         0.26        48.07 
TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 
        6.08         1.18        57.57        24.26        48.79        45.57 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1959 TCGA-36-1568 TCGA-36-1570 
       30.18        18.77        22.45         2.17        28.73        21.53 
TCGA-36-1576 TCGA-36-1577 TCGA-36-2530 TCGA-36-2532 TCGA-36-2537 TCGA-36-2538 
       30.05        25.74        33.01        29.49        25.91        25.08 
TCGA-36-2540 TCGA-36-2544 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 
       23.80        20.98        20.52        14.17        16.14        11.47 
TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 
        9.44         7.56         7.46        24.03        11.38         1.74 
TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2355 
       22.32        25.05        25.02       180.16        80.12         2.14 
TCGA-59-2363 TCGA-61-1721 TCGA-61-1728 TCGA-61-1734 TCGA-61-1736 TCGA-61-1741 
        5.39        11.11        27.88        28.47        48.79        33.67 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 TCGA-61-1910 
        1.41         8.42         5.79        13.02         9.07        37.02 
TCGA-61-1911 TCGA-61-1917 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2009 
       42.48        43.43         5.52        14.50         3.98        39.85 
TCGA-61-2017 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2098 TCGA-61-2101 
       45.96        51.72        71.74        61.64        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2611 
        6.48        76.83        20.68        44.52       125.72        15.88 
TCGA-61-2612 TCGA-61-2613 
        6.35        31.07 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.30               0.26 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            129.96             180.16 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            30.625             25.560 
[1] "0.3 - 130.0 (30.6)" "0.3 - 180.2 (25.6)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
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"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
[1] "hr=" "1"  
D64V2, continuous
D64V3, multiclass
                    clus
vv                   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           263                285
  PERITONEUM (OVARY)                2                  0
D64V4, continuous
D64V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      1  265
  13Q LOSS WILD-TYPE    2  284
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                 1                  2
  YES              265                284
D64V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED    211   55
  13Q LOSS WILD-TYPE  237   49
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO               211                237
  YES               55                 49

Clustering(65) Variable = 14q loss mutation analysis
D65V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    84 109
  14Q LOSS WILD-TYPE 177 176
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               193                353 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               109                176 
$`14Q LOSS MUTATED`
TCGA-04-1335 TCGA-04-1337 TCGA-04-1343 TCGA-04-1346 TCGA-04-1348 TCGA-04-1351 
        1.81         2.01        11.87        65.49        48.76        65.46 
TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1371 TCGA-04-1516 
       49.28        44.32        33.67        76.54        82.36        41.59 
TCGA-04-1525 TCGA-04-1542 TCGA-04-1638 TCGA-04-1648 TCGA-04-1655 TCGA-09-0369 
       38.37        84.20        55.40        28.64        45.34        35.54 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1666 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
        9.96        38.43        57.57        17.98         5.85         3.02 
TCGA-09-2048 TCGA-09-2051 TCGA-09-2053 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 
        4.50        63.09        39.75        12.46        54.31        25.91 
TCGA-10-0938 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0726 TCGA-13-0730 
       19.86        24.59        44.55        39.58        31.07        17.79 
TCGA-13-0751 TCGA-13-0757 TCGA-13-0758 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 
       55.17        11.18        11.38        34.06        31.04        21.40 
TCGA-13-0792 TCGA-13-0795 TCGA-13-0799 TCGA-13-0803 TCGA-13-0884 TCGA-13-0886 
       36.72        19.56         7.79        43.82       107.18        74.27 
TCGA-13-0887 TCGA-13-0891 TCGA-13-0893 TCGA-13-0906 TCGA-13-0913 TCGA-13-0919 
       66.64        69.01        43.36        44.94        29.98        14.89 
TCGA-13-0921 TCGA-13-0923 TCGA-13-1405 TCGA-13-1407 TCGA-13-1481 TCGA-13-1482 
        4.64         6.41         7.36         6.05        87.06        61.71 
TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1498 TCGA-13-1504 TCGA-13-1505 
       22.39        82.88        52.44        37.61        16.57         4.21 
TCGA-13-1507 TCGA-13-1510 TCGA-13-1512 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        4.77         2.56         3.09        10.78         8.75         6.28 
TCGA-20-1683 TCGA-20-1684 TCGA-20-1687 TCGA-23-1024 TCGA-23-1028 TCGA-23-1030 
       25.38        19.07         2.66        15.39        49.41        29.10 
TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1117 TCGA-23-1119 
       18.87        51.35        54.51         3.22        33.30       129.96 
TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2077 TCGA-23-2081 TCGA-23-2643 
       39.09        33.47        24.95       115.89        77.00         4.70 
TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 TCGA-24-1105 
       19.63        11.64        21.80        41.56        22.32        47.41 
TCGA-24-1422 TCGA-24-1424 TCGA-24-1427 TCGA-24-1434 TCGA-24-1463 TCGA-24-1464 
        0.76         6.02         4.80        18.67        72.92        12.46 
TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 TCGA-24-1546 
       45.14         9.11         3.42         1.18        26.96        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1551 TCGA-24-1552 TCGA-24-1565 TCGA-24-1604 
       16.21        56.58        51.91        41.39        10.26        88.34 
TCGA-24-1614 TCGA-24-1843 TCGA-24-1846 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 
       48.33         3.48         4.37        30.21        16.41        11.05 
TCGA-24-2019 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2254 TCGA-24-2260 
        4.87        44.84        58.16        34.82        57.07        36.16 
TCGA-24-2262 TCGA-24-2267 TCGA-24-2295 TCGA-25-1320 TCGA-25-1321 TCGA-25-1631 
        0.36        47.54        33.11        36.95        33.96         0.30 
TCGA-25-1632 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2393 
       56.94        35.54        51.22        14.93        24.99        38.04 
TCGA-25-2396 TCGA-25-2400 TCGA-25-2404 TCGA-29-1691 TCGA-29-1694 TCGA-29-1695 
        3.02        42.02        29.00        47.18        38.53         0.79 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 
       31.17        68.28        18.25        41.95        29.23        17.00 
TCGA-29-1763 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1785 TCGA-29-2427 
       66.77        22.98        24.36        22.52        34.62        62.47 
TCGA-29-2434 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1859 
       11.47        51.91        36.26         2.47        15.68        48.07 
TCGA-30-1861 TCGA-30-1887 TCGA-31-1944 TCGA-31-1951 TCGA-31-1953 TCGA-36-1571 
       34.78        24.26        45.57        22.45         6.71        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-2534 TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 
       22.55         8.55        29.79        25.08        21.60         2.24 
TCGA-36-2547 TCGA-42-2589 TCGA-42-2591 TCGA-57-1992 TCGA-59-2348 TCGA-59-2372 
       20.52         7.56         7.63        28.96       180.16        44.78 
TCGA-61-1728 TCGA-61-1733 TCGA-61-1736 TCGA-61-1741 TCGA-61-1895 TCGA-61-1906 
       27.88        31.76        48.79        33.67         1.41        34.13 
TCGA-61-1917 TCGA-61-2000 TCGA-61-2009 TCGA-61-2018 TCGA-61-2088 TCGA-61-2102 
       43.43        14.50        39.85        45.40         4.77         6.48 
TCGA-61-2109 
       20.68 

$`14Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1338 TCGA-04-1342 TCGA-04-1347 
       40.24        41.00        49.15        46.62        18.51        63.06 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1361 TCGA-04-1367 TCGA-04-1514 TCGA-04-1517 
       21.57        63.98        32.52        71.47        56.55        19.99 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1644 TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 
      119.08        29.06        48.89        27.88        64.64        36.23 
TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 
       31.86        47.70        29.16         9.47        57.73        17.95 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       89.33        74.89        41.59        61.87        55.36        30.48 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 
        8.55        97.55         6.15         6.12        35.15       112.37 
TCGA-09-2050 TCGA-09-2054 TCGA-09-2055 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 
       71.11        20.91        26.93        81.47        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-13-0714 TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 TCGA-13-0755 TCGA-13-0760 
        6.21         2.73        12.39        15.19         2.47        11.54 
TCGA-13-0762 TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 
       32.25         8.42        38.93        28.70        30.35         8.71 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.12         8.28         8.19        35.28        35.28        13.61 
TCGA-13-0883 TCGA-13-0885 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0897 
       68.91        91.40        70.39        61.81        67.99        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0920 
       44.84        37.08        27.68        34.06        21.14        13.81 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.08        10.88         6.61         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
        4.21         5.33        54.61        29.39        98.04        20.68 
TCGA-13-1488 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       70.82        73.55        38.17        49.22         4.24        54.31 
TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 TCGA-13-1506 TCGA-13-1509 TCGA-13-1511 
       38.37        13.97        32.84         4.41         4.14         3.88 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       14.24        12.23         8.58        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 TCGA-23-1022 
       72.20        27.48        16.67         2.93        47.54        42.51 
TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1029 TCGA-23-1032 TCGA-23-1113 
       40.54        26.83        31.73         8.81         2.24        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1118 TCGA-23-1120 TCGA-23-1121 TCGA-23-1124 
       68.68         4.57        86.01         4.27         6.38        58.13 
TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 
        0.53        87.48        91.66        49.84         2.76         4.50 
TCGA-24-0966 TCGA-24-0980 TCGA-24-1103 TCGA-24-1104 TCGA-24-1413 TCGA-24-1416 
        7.63         7.66        54.08        63.55         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 
        7.82         7.99         7.86         6.25         5.95         5.36 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 TCGA-24-1436 TCGA-24-1467 
       17.36        28.34        19.17        43.53         8.55       105.99 
TCGA-24-1474 TCGA-24-1545 TCGA-24-1550 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 
       22.19        57.37        41.06        58.09        88.50        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       39.88        19.53        44.09        45.50        47.70        25.87 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 
       17.23        90.15        38.24         8.32         3.72         3.81 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1930 
       11.28         5.75         5.49         9.80        22.65        81.11 
TCGA-24-2020 TCGA-24-2027 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
      151.99       109.68        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2261 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
       64.01        44.48         0.79        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-24-2298 
        0.82        67.36        36.23        16.64        55.86        53.26 
TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 
        1.02        26.93        31.99        51.06        37.02         1.02 
TCGA-25-1318 TCGA-25-1319 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       34.98        65.00         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1633 
       18.02        15.78         0.36        20.58         7.86        60.59 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2397 
       18.05        85.05        13.02        49.05         1.02        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 
       45.01        19.99         2.96        30.97        26.96        78.87 
TCGA-29-1690 TCGA-29-1693 TCGA-29-1696 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       44.71       101.75        33.70         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1711 TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 
       59.67        34.62        85.68        62.93        39.09        31.23 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1781 
       17.29        12.36        11.84        12.30        14.93         8.35 
TCGA-29-1783 TCGA-29-1784 TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 
        7.20         5.36        86.17        65.00        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1714 TCGA-30-1857 TCGA-30-1860 
       42.25        11.84         9.76        38.07         0.26        44.91 
TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 
        6.08        36.62         1.18        57.57        30.05        48.79 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 
       30.18        18.77        42.51        44.09         2.17        28.73 
TCGA-36-1569 TCGA-36-1570 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       29.06        21.53        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2537 TCGA-36-2540 
       24.69        35.05        33.01        29.49        25.91        23.80 
TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 
       20.98        18.31        14.17        16.14        11.47        14.30 
TCGA-42-2588 TCGA-42-2590 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
        9.44         7.46        24.03        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1993 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       22.32        25.05        25.02        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 TCGA-61-1722 
        9.40        34.39         2.14         5.39        11.11         8.05 
TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1730 TCGA-61-1734 TCGA-61-1737 
       20.94        31.40        18.54         4.34        28.47        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 
       35.80         2.43        43.69         8.42         5.79        11.41 
TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       13.02         9.07        31.30        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       56.58        67.73        15.75        38.17         1.97         5.52 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 
       17.98         3.98        30.61        30.64         1.18        45.96 
TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.80        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
       65.49        55.50        76.83        44.52       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       51.91        15.88         6.35        31.07         8.58 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.30               0.26 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            180.16             151.99 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             29.23              27.68 
[1] "0.3 - 180.2 (29.2)" "0.3 - 152.0 (27.7)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
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"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
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        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D65V2, continuous
D65V3, multiclass
                    clus
vv                   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           197                351
  PERITONEUM (OVARY)                0                  2
D65V4, continuous
D65V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      0  197
  14Q LOSS WILD-TYPE    3  352
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 0                  3
  YES              197                352
D65V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED    156   41
  14Q LOSS WILD-TYPE  292   63
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO               156                292
  YES               41                 63

Clustering(66) Variable = 15q loss mutation analysis
D66V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED   101 123
  15Q LOSS WILD-TYPE 160 162
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               224                322 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               123                162 
$`15Q LOSS MUTATED`
TCGA-04-1331 TCGA-04-1338 TCGA-04-1342 TCGA-04-1350 TCGA-04-1362 TCGA-04-1367 
       40.24        46.62        18.51        63.98        44.32        71.47 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 
       82.36        56.55        41.59        19.99        38.37        29.06 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1655 TCGA-09-0365 TCGA-09-1661 
       27.88        28.64        64.64        45.34         9.47        38.43 
TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 TCGA-09-2050 
       61.87        55.36        30.48        17.98         8.55        71.11 
TCGA-09-2051 TCGA-09-2054 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       63.09        20.91        12.46        54.31        25.91        81.47 
TCGA-13-0717 TCGA-13-0723 TCGA-13-0725 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 
       24.59        39.58        12.39        17.79        55.17        11.18 
TCGA-13-0758 TCGA-13-0760 TCGA-13-0791 TCGA-13-0793 TCGA-13-0794 TCGA-13-0801 
       11.38        11.54        38.93        28.70        30.35         8.28 
TCGA-13-0807 TCGA-13-0887 TCGA-13-0889 TCGA-13-0891 TCGA-13-0905 TCGA-13-0910 
       13.61        66.64        61.81        69.01        47.84        37.08 
TCGA-13-0911 TCGA-13-0921 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 
       27.68         4.64         7.36         6.05         5.92         6.84 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 TCGA-13-1487 
        4.70         4.21        87.06        61.71        98.04        22.39 
TCGA-13-1488 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1506 
       70.82        52.44        38.17        49.22         4.24         4.41 
TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 TCGA-20-0990 TCGA-20-1682 TCGA-20-1683 
        4.77         4.14         2.56        25.94        27.48        25.38 
TCGA-20-1684 TCGA-23-1030 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1113 
       19.07        29.10         2.24        51.35        54.51        31.20 
TCGA-23-1114 TCGA-23-1119 TCGA-23-1122 TCGA-23-1123 TCGA-23-1809 TCGA-23-2077 
       68.68       129.96        39.09        33.47         0.53       115.89 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0968 TCGA-24-0979 TCGA-24-0982 
       49.84         2.76         4.50        19.63        41.56        22.32 
TCGA-24-1104 TCGA-24-1413 TCGA-24-1417 TCGA-24-1418 TCGA-24-1422 TCGA-24-1424 
       63.55         6.31         7.82         7.99         0.76         6.02 
TCGA-24-1426 TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1463 
        5.36        17.36        28.34        19.17        18.67        72.92 
TCGA-24-1466 TCGA-24-1469 TCGA-24-1471 TCGA-24-1544 TCGA-24-1548 TCGA-24-1550 
       45.14         9.11         1.18        26.96        16.21        41.06 
TCGA-24-1552 TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 TCGA-24-1603 TCGA-24-1614 
       41.39        58.09        70.62        39.88        90.15        48.33 
TCGA-24-1616 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1850 TCGA-24-1924 
       38.24         3.48         3.72         3.81         5.49        30.21 
TCGA-24-2019 TCGA-24-2026 TCGA-24-2030 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 
        4.87        34.82        53.95        64.01        57.07        36.16 
TCGA-24-2261 TCGA-24-2280 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 
        0.79        70.45        16.64        33.11        55.86        53.26 
TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 
        1.02        31.99        51.06        37.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1631 
       36.95        33.96         2.99        12.00         2.96         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1871 TCGA-25-2392 TCGA-25-2393 
       56.94        60.59        35.54        24.99         1.02        38.04 
TCGA-25-2396 TCGA-29-1693 TCGA-29-1695 TCGA-29-1698 TCGA-29-1699 TCGA-29-1702 
        3.02       101.75         0.79        68.28         0.53        18.64 
TCGA-29-1703 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       59.67        41.95        29.23        34.62        17.00        85.68 
TCGA-29-1763 TCGA-29-1764 TCGA-29-1766 TCGA-29-1769 TCGA-29-1770 TCGA-29-1774 
       66.77        62.93        39.09        22.98        24.36        17.29 
TCGA-29-1775 TCGA-29-1777 TCGA-29-1778 TCGA-29-1784 TCGA-29-2414 TCGA-29-2428 
       12.36        12.30        14.93         5.36        86.17        45.11 
TCGA-29-2434 TCGA-30-1714 TCGA-30-1718 TCGA-30-1856 TCGA-30-1859 TCGA-30-1860 
       11.47        38.07        51.91        15.68        48.07        44.91 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1950 
       36.62         1.18        24.26        30.05        48.79        18.77 
TCGA-31-1953 TCGA-31-1959 TCGA-36-1575 TCGA-36-1581 TCGA-36-2529 TCGA-36-2543 
        6.71         2.17         8.55        24.69        35.05         2.24 
TCGA-36-2545 TCGA-36-2548 TCGA-36-2551 TCGA-42-2589 TCGA-57-1583 TCGA-57-1992 
       18.31        14.17        16.14         7.56        11.38        28.96 
TCGA-57-1993 TCGA-59-2348 TCGA-59-2350 TCGA-59-2351 TCGA-61-1724 TCGA-61-1728 
       25.05       180.16        22.32       116.12        20.94        27.88 
TCGA-61-1733 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1895 
       31.76        44.84        35.80         2.43        33.67         1.41 
TCGA-61-1901 TCGA-61-1906 TCGA-61-1914 TCGA-61-1917 TCGA-61-1919 TCGA-61-2003 
       11.41        34.13        56.58        43.43        38.17         3.98 
TCGA-61-2012 TCGA-61-2096 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       30.64        58.39        65.49        55.50         6.48        76.83 
TCGA-61-2110 TCGA-61-2111 
       44.52       125.72 

$`15Q LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1343 TCGA-04-1346 
       41.00         1.81        49.15         2.01        11.87        65.49 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 
       63.06        48.76        21.57        65.46        49.28        32.52 
TCGA-04-1364 TCGA-04-1365 TCGA-04-1530 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       33.67        76.54       119.08        84.20        55.40        48.89 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 
       36.23        31.86        47.70        29.16        57.73        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 
       35.54         9.96        89.33        74.89        41.59        57.57 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 
        5.85         3.02        97.55         6.15         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2053 TCGA-09-2055 TCGA-10-0928 TCGA-10-0930 
        4.50       112.37        39.75        26.93        18.48        33.24 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0720 TCGA-13-0724 TCGA-13-0726 TCGA-13-0727 
       19.86         6.21        44.55         2.73        31.07        15.19 
TCGA-13-0755 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
        2.47        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0792 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 
       36.72        19.56         8.71         7.79         8.12         8.19 
TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       43.82        35.28        35.28        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0888 TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 
       74.27        70.39        67.99        43.36        57.47        56.15 
TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 TCGA-13-0908 
       57.07        19.36        47.38        48.33        44.94        44.84 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 
       34.06        29.98        21.14        14.89        13.81         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1412 TCGA-13-1477 TCGA-13-1483 
        6.08        10.88         6.61         5.33        54.61        29.39 
TCGA-13-1485 TCGA-13-1489 TCGA-13-1492 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 
       20.68        82.88        73.55        54.31        37.61        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1511 TCGA-13-1512 
       13.97        32.84        16.57         4.21         3.88         3.09 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
       14.24        12.23         8.58        10.78         8.75         6.28 
TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       23.05        26.20        72.20        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       47.54        42.51        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1031 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 
       49.41         8.81        18.87         3.22         4.57        33.30 
TCGA-23-1118 TCGA-23-1120 TCGA-23-1121 TCGA-23-1124 TCGA-23-2072 TCGA-23-2078 
       86.01         4.27         6.38        58.13        24.95        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2643 TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 
       91.66        77.00         4.70         7.63        11.64        21.80 
TCGA-24-0980 TCGA-24-1103 TCGA-24-1105 TCGA-24-1416 TCGA-24-1419 TCGA-24-1423 
        7.66        54.08        47.41         6.38         7.86         6.25 
TCGA-24-1425 TCGA-24-1427 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1467 
        5.95         4.80        43.53         8.55        12.46       105.99 
TCGA-24-1470 TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1551 
        3.42        22.19        57.37        64.27        56.58        51.91 
TCGA-24-1555 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 
       88.50        19.53        44.09        45.50        47.70        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1604 TCGA-24-1842 TCGA-24-1846 TCGA-24-1847 
       10.26        17.23        88.34         8.32         4.37        11.28 
TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        5.75         9.80        22.65        16.41        11.05        81.11 
TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 
      151.99        44.84        58.16       109.68        14.43        18.48 
TCGA-24-2035 TCGA-24-2038 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2281 
       28.18        44.48         0.36        47.54        31.63        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-25-1313 TCGA-25-1317 TCGA-25-1623 
        0.82        67.36        36.23        26.93         1.02        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1635 
       18.02        15.78         0.36        20.58         7.86        51.22 
TCGA-25-1870 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2397 
       14.93        18.05        85.05        13.02        49.05        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 TCGA-29-1696 
       26.96        78.87        44.71        47.18        38.53        33.70 
TCGA-29-1697 TCGA-29-1701 TCGA-29-1705 TCGA-29-1768 TCGA-29-1771 TCGA-29-1776 
       31.17        16.90        18.25        31.23        22.52        11.84 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 TCGA-29-2425 TCGA-29-2427 TCGA-29-2429 
        8.35         7.20        34.62        65.00        62.47         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2436 TCGA-30-1853 TCGA-30-1855 TCGA-30-1857 
       42.25        11.84         9.76        36.26         2.47         0.26 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1880 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 
       34.78         6.08        57.57        45.57        30.18        22.45 
TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       42.51        44.09        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2530 
       22.55        30.05        25.74        27.85        24.23        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2544 TCGA-36-2547 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2590 
       20.98        20.52        11.47        14.30         9.44         7.46 
TCGA-42-2591 TCGA-57-1582 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1994 
        7.63        24.03        21.14         1.74        22.32        25.02 
TCGA-59-2349 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
       80.12         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 TCGA-61-1727 TCGA-61-1730 TCGA-61-1734 
       11.11         8.05        31.40        18.54         4.34        28.47 
TCGA-61-1736 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 TCGA-61-1903 TCGA-61-1904 
       48.79        43.69         8.42         5.79        13.02         9.07 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1915 TCGA-61-1918 
       31.30        37.02        42.48        48.92        67.73        15.75 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 
        1.97         5.52        14.50        17.98        30.61        39.85 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 
        1.18        45.96        45.40         4.80         4.77        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2097 TCGA-61-2109 TCGA-61-2113 TCGA-61-2610 
       71.74        61.64        60.62        20.68        22.22        51.91 
TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       15.88         6.35        31.07         8.58 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.30               0.26 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            180.16             151.99 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            30.130             26.055 
[1] "0.3 - 180.2 (30.1)" "0.3 - 152.0 (26.1)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
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        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D66V2, continuous
D66V3, multiclass
                    clus
vv                   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           225                323
  PERITONEUM (OVARY)                2                  0
D66V4, continuous
D66V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      2  226
  15Q LOSS WILD-TYPE    1  323
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 2                  1
  YES              226                323
D66V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED    176   52
  15Q LOSS WILD-TYPE  272   52
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO               176                272
  YES               52                 52

Clustering(67) Variable = 16p loss mutation analysis
D67V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED   139 141
  16P LOSS WILD-TYPE 122 144
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               280                266 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               141                144 
$`16P LOSS MUTATED`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1343 TCGA-04-1349 TCGA-04-1350 TCGA-04-1362 TCGA-04-1364 TCGA-04-1516 
       11.87        21.57        63.98        44.32        33.67        41.59 
TCGA-04-1517 TCGA-04-1638 TCGA-04-1644 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 
       19.99        55.40        48.89        64.64        36.23        31.86 
TCGA-04-1654 TCGA-09-0367 TCGA-09-1659 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       47.70        17.95         9.96        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 TCGA-09-1675 TCGA-09-2043 
       55.36        30.48        17.98         3.02        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 
        6.12        35.15       112.37        71.11        39.75        20.91 
TCGA-10-0928 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 
       18.48        35.41        15.12        19.86         6.21        24.59 
TCGA-13-0720 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       44.55        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 TCGA-13-0792 
       11.38        34.06        31.04        21.40        38.93        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 TCGA-13-0801 TCGA-13-0803 TCGA-13-0805 
       28.70        30.35         8.71         8.28        43.82        35.28 
TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0891 
       13.61       107.18        91.40        74.27        66.64        69.01 
TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0903 TCGA-13-0904 TCGA-13-0906 
       43.36        57.47        56.15        47.38        48.33        44.94 
TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 
       37.08        27.68        34.06        21.14        14.89        13.81 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 
        6.41         6.08        10.88         6.61         7.36         6.05 
TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 TCGA-13-1487 
        5.92         4.70         4.21         5.33        87.06        22.39 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 
       82.88        52.44        38.17        49.22         4.24        54.31 
TCGA-13-1498 TCGA-13-1500 TCGA-13-1505 TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 
       37.61        13.97         4.21         4.77         4.14         3.88 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2061 TCGA-13-2065 TCGA-20-0990 TCGA-20-1683 
        3.09        14.24        10.78         8.75        25.94        25.38 
TCGA-20-1685 TCGA-20-1687 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 
       16.67         2.66        31.73        49.41         8.81        29.10 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
        2.24        51.35         3.22        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1119 TCGA-23-1123 TCGA-23-2072 TCGA-23-2078 TCGA-23-2643 
       33.30       129.96        33.47        24.95        87.48         4.70 
TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-1104 TCGA-24-1105 
        7.63        11.64        21.80        41.56        63.55        47.41 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 TCGA-24-1426 
        6.38         7.82         7.86         0.76         5.95         5.36 
TCGA-24-1431 TCGA-24-1463 TCGA-24-1466 TCGA-24-1469 TCGA-24-1471 TCGA-24-1474 
       19.17        72.92        45.14         9.11         1.18        22.19 
TCGA-24-1548 TCGA-24-1552 TCGA-24-1560 TCGA-24-1562 TCGA-24-1565 TCGA-24-1567 
       16.21        41.39        44.09        45.50        10.26        17.23 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1923 TCGA-24-1924 
        3.48         3.72         4.37        11.28        22.65        30.21 
TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       16.41        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2035 TCGA-24-2036 TCGA-24-2262 
       34.82       109.68        14.43        28.18        64.01         0.36 
TCGA-24-2267 TCGA-24-2288 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 
       47.54         0.82        36.23        16.64        33.11        55.86 
TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 
       53.26         1.02        26.93        31.99        51.06        37.02 
TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       34.98        36.95        33.96         2.99        12.00         2.96 
TCGA-25-1632 TCGA-25-1635 TCGA-25-1870 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 
       56.94        51.22        14.93        13.02        49.05        38.04 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2409 
       12.00        45.01        42.02         2.96        29.00        26.96 
TCGA-29-1688 TCGA-29-1693 TCGA-29-1694 TCGA-29-1697 TCGA-29-1699 TCGA-29-1701 
       78.87       101.75        38.53        31.17         0.53        16.90 
TCGA-29-1711 TCGA-29-1762 TCGA-29-1766 TCGA-29-1769 TCGA-29-1771 TCGA-29-1777 
       34.62        85.68        39.09        22.98        22.52        12.30 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 TCGA-29-2428 TCGA-29-2431 TCGA-29-2434 
        8.35         7.20        34.62        45.11        42.25        11.47 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 
       36.26         2.47        15.68         0.26        44.91        34.78 
TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-31-1944 TCGA-31-1951 TCGA-31-1953 
       36.62        57.57        24.26        45.57        22.45         6.71 
TCGA-31-1955 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 
       42.51        28.73        29.06        21.53        22.85         8.55 
TCGA-36-1576 TCGA-36-1577 TCGA-36-2532 TCGA-36-2543 TCGA-36-2545 TCGA-36-2548 
       30.05        25.74        29.49         2.24        18.31        14.17 
TCGA-36-2551 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1584 TCGA-57-1992 
       16.14         7.56         7.46         7.63        21.14        28.96 
TCGA-57-1993 TCGA-59-2350 TCGA-59-2355 TCGA-59-2363 TCGA-61-1724 TCGA-61-1725 
       25.05        22.32         2.14         5.39        20.94        31.40 
TCGA-61-1728 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1741 TCGA-61-1895 
       27.88        28.47        48.79        44.84        33.67         1.41 
TCGA-61-1899 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 
        8.42        13.02         9.07        34.13        31.30        37.02 
TCGA-61-1913 TCGA-61-1914 TCGA-61-1995 TCGA-61-1998 TCGA-61-2003 TCGA-61-2008 
       48.92        56.58         1.97         5.52         3.98        30.61 
TCGA-61-2088 TCGA-61-2094 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 
        4.77        71.74        58.39        60.62        65.49         6.48 
TCGA-61-2109 TCGA-61-2113 TCGA-61-2611 TCGA-61-2613 
       20.68        22.22        15.88        31.07 

$`16P LOSS WILD-TYPE`
TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1351 TCGA-04-1356 
       18.51        65.49        63.06        48.76        65.46        49.28 
TCGA-04-1361 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1525 
       32.52        76.54        71.47        82.36        56.55        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1646 TCGA-04-1648 TCGA-04-1655 
      119.08        29.06        84.20        27.88        28.64        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0369 TCGA-09-1661 TCGA-09-1662 
       29.16         9.47        57.73        35.54        38.43        89.33 
TCGA-09-1664 TCGA-09-1672 TCGA-09-1674 TCGA-09-2048 TCGA-09-2051 TCGA-09-2055 
       74.89         5.85         8.55         4.50        63.09        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 
       12.46        54.31        25.91        81.47        33.24        32.28 
TCGA-10-0933 TCGA-10-0934 TCGA-10-0936 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 
       11.70         3.88        35.80        39.58         2.73        12.39 
TCGA-13-0726 TCGA-13-0760 TCGA-13-0762 TCGA-13-0768 TCGA-13-0795 TCGA-13-0799 
       31.07        11.54        32.25         8.42        19.56         7.79 
TCGA-13-0800 TCGA-13-0802 TCGA-13-0804 TCGA-13-0883 TCGA-13-0888 TCGA-13-0889 
        8.12         8.19        35.28        68.91        70.39        61.81 
TCGA-13-0890 TCGA-13-0900 TCGA-13-0901 TCGA-13-0905 TCGA-13-0908 TCGA-13-0913 
       67.99        57.07        19.36        47.84        44.84        29.98 
TCGA-13-0921 TCGA-13-1409 TCGA-13-1477 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        4.64         6.84        54.61        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1488 TCGA-13-1492 TCGA-13-1499 TCGA-13-1501 TCGA-13-1504 
       20.68        70.82        73.55        38.37        32.84        16.57 
TCGA-13-1506 TCGA-13-1510 TCGA-13-2059 TCGA-13-2060 TCGA-13-2071 TCGA-20-0987 
        4.41         2.56        12.23         8.58         6.28        23.05 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1682 TCGA-20-1684 TCGA-20-1686 TCGA-23-1021 
       26.20        72.20        27.48        19.07         2.93        47.54 
TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1031 TCGA-23-1110 
       42.51        40.54        15.39        26.83        18.87        54.51 
TCGA-23-1118 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1124 TCGA-23-1809 
       86.01         4.27         6.38        39.09        58.13         0.53 
TCGA-23-2077 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 
      115.89        91.66        77.00        49.84         2.76         4.50 
TCGA-24-0968 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1413 TCGA-24-1418 
       19.63         7.66        22.32        54.08         6.31         7.99 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 TCGA-24-1434 
        6.25         6.02         4.80        17.36        28.34        18.67 
TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1467 TCGA-24-1470 TCGA-24-1544 
       43.53         8.55        12.46       105.99         3.42        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 
       57.37        64.27        56.58        41.06        51.91        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1563 TCGA-24-1564 
       88.50        70.62        39.88        19.53        47.70        25.87 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1845 
       90.15        88.34        48.33        38.24         8.32         3.81 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1928 TCGA-24-2030 TCGA-24-2033 
        5.75         5.49         9.80        11.05        53.95        18.48 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2271 TCGA-24-2280 
       44.48        57.07        36.16         0.79        31.63        70.45 
TCGA-24-2281 TCGA-24-2289 TCGA-25-1317 TCGA-25-1319 TCGA-25-1623 TCGA-25-1625 
       44.58        67.36         1.02        65.00        18.58        18.02 
TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1633 
       15.78         0.36        20.58         7.86         0.30        60.59 
TCGA-25-1634 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2396 
       35.54        24.99        18.05        85.05         1.02         3.02 
TCGA-25-2399 TCGA-25-2408 TCGA-29-1690 TCGA-29-1691 TCGA-29-1695 TCGA-29-1696 
       19.99        30.97        44.71        47.18         0.79        33.70 
TCGA-29-1698 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 
       68.28        18.64        59.67        18.25        41.95        29.23 
TCGA-29-1761 TCGA-29-1763 TCGA-29-1764 TCGA-29-1768 TCGA-29-1770 TCGA-29-1774 
       17.00        66.77        62.93        31.23        24.36        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 TCGA-29-1784 TCGA-29-2414 TCGA-29-2425 
       12.36        11.84        14.93         5.36        86.17        65.00 
TCGA-29-2427 TCGA-29-2429 TCGA-29-2432 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       62.47         4.87        11.84         9.76        38.07        51.91 
TCGA-30-1859 TCGA-30-1862 TCGA-30-1867 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 
       48.07         6.08         1.18        30.05        48.79        30.18 
TCGA-31-1950 TCGA-31-1956 TCGA-31-1959 TCGA-36-1574 TCGA-36-1578 TCGA-36-1580 
       18.77        44.09         2.17        22.55        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 
       24.69        35.05        33.01        29.79        25.91        25.08 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2544 TCGA-36-2547 TCGA-36-2552 TCGA-42-2582 
       23.80        21.60        20.98        20.52        11.47        14.30 
TCGA-42-2588 TCGA-57-1582 TCGA-57-1583 TCGA-57-1585 TCGA-57-1586 TCGA-57-1994 
        9.44        24.03        11.38         1.74        22.32        25.02 
TCGA-59-2348 TCGA-59-2349 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2372 
      180.16        80.12       116.12         9.40        34.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1727 TCGA-61-1730 TCGA-61-1733 TCGA-61-1738 
       11.11         8.05        18.54         4.34        31.76        35.80 
TCGA-61-1740 TCGA-61-1743 TCGA-61-1900 TCGA-61-1901 TCGA-61-1911 TCGA-61-1915 
        2.43        43.69         5.79        11.41        42.48        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-2000 TCGA-61-2002 TCGA-61-2009 
       43.43        15.75        38.17        14.50        17.98        39.85 
TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2092 
       30.64         1.18        45.96        45.40         4.80        51.72 
TCGA-61-2095 TCGA-61-2101 TCGA-61-2104 TCGA-61-2110 TCGA-61-2111 TCGA-61-2610 
       61.64        55.50        76.83        44.52       125.72        51.91 
TCGA-61-2612 TCGA-61-2614 
        6.35         8.58 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.26               0.30 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            151.99             180.16 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            27.320             29.195 
[1] "0.3 - 152.0 (27.3)" "0.3 - 180.2 (29.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D67V2, continuous
D67V3, multiclass
                    clus
vv                   16P LOSS MUTATED 16P LOSS WILD-TYPE
  OMENTUM                           2                  0
  OVARY                           280                268
  PERITONEUM (OVARY)                1                  1
D67V4, continuous
D67V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      1  282
  16P LOSS WILD-TYPE    2  267
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 1                  2
  YES              282                267
D67V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED    228   55
  16P LOSS WILD-TYPE  220   49
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO               228                220
  YES               55                 49

Clustering(68) Variable = 16q loss mutation analysis
D68V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED   185 200
  16Q LOSS WILD-TYPE  76  85
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               385                161 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               200                 85 
$`16Q LOSS MUTATED`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 
       40.24        41.00         1.81        49.15         2.01        46.62 
TCGA-04-1342 TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 
       18.51        11.87        65.49        63.06        48.76        21.57 
TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       63.98        65.46        49.28        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1371 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1638 
       76.54        82.36        41.59        19.99        38.37        55.40 
TCGA-04-1644 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       48.89        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1665 
       57.73        17.95         9.96        38.43        89.33        41.59 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1673 
       57.57        61.87        55.36        30.48        17.98         3.02 
TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 
        8.55        97.55         6.15         6.12         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-10-0925 TCGA-10-0926 
       71.11        63.09        39.75        20.91        54.31        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0931 TCGA-10-0935 TCGA-10-0936 
       81.47        18.48        33.24        32.28        35.41        35.80 
TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 
       15.12        19.86         6.21        24.59        44.55         2.73 
TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 
       31.07        15.19        17.79        55.17         2.47        11.18 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 
       11.38        34.06        32.25        31.04        21.40        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0801 
       36.72        28.70        30.35        19.56         8.71         8.28 
TCGA-13-0802 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 
        8.19        35.28        35.28        13.61        68.91       107.18 
TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0891 TCGA-13-0893 
       91.40        74.27        66.64        61.81        69.01        43.36 
TCGA-13-0897 TCGA-13-0899 TCGA-13-0903 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 
       57.47        56.15        47.38        44.94        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 
       27.68        34.06        21.14        14.89        13.81         6.41 
TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 
        6.08        10.88         6.61         7.36         6.05         5.92 
TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 TCGA-13-1483 TCGA-13-1487 
        4.70         4.21         5.33        87.06        29.39        22.39 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       82.88        52.44        73.55        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 
       54.31        37.61        13.97        32.84        16.57         4.21 
TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 
        4.41         4.77         4.14         3.88         3.09        14.24 
TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
        8.58        10.78         8.75        23.05        25.94        26.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 
       27.48        25.38        16.67         2.93         2.66        42.51 
TCGA-23-1023 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1032 
       40.54        31.73        49.41         8.81        29.10         2.24 
TCGA-23-1109 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 
       51.35         3.22        31.20        68.68         4.57        33.30 
TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 
       86.01       129.96         4.27         6.38        39.09        33.47 
TCGA-23-2072 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2641 TCGA-23-2643 
       24.95        87.48        91.66        77.00         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 
        4.50         7.63        11.64        21.80        41.56        22.32 
TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 
       54.08        63.55        47.41         6.31         6.38         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 
        7.99         7.86         0.76         5.95         5.36         4.80 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1463 TCGA-24-1464 
       17.36        28.34        19.17        18.67        72.92        12.46 
TCGA-24-1466 TCGA-24-1469 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1545 
       45.14         9.11         3.42         1.18        22.19        57.37 
TCGA-24-1548 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1556 TCGA-24-1558 
       16.21        41.06        51.91        41.39        70.62        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 
       44.09        45.50        47.70        10.26        17.23        90.15 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1846 TCGA-24-1847 TCGA-24-1923 TCGA-24-1924 
        3.48         3.72         4.37        11.28        22.65        30.21 
TCGA-24-1927 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       16.41        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
       34.82        14.43        53.95        18.48        28.18        64.01 
TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2288 
       36.16         0.79         0.36        47.54        31.63         0.82 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 
       36.23        16.64        33.11        55.86        53.26         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1318 TCGA-25-1319 
       26.93        31.99        51.06        37.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1632 
       36.95        33.96         2.99        12.00         2.96        56.94 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 
       51.22        14.93        24.99        85.05        13.02        49.05 
TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
       38.04        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2409 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       29.00        26.96        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 
       33.70        31.17        68.28         0.53        16.90        18.64 
TCGA-29-1703 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 TCGA-29-1768 
       59.67        17.00        85.68        66.77        39.09        31.23 
TCGA-29-1769 TCGA-29-1771 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-1785 
       22.98        22.52        12.30         8.35         7.20        34.62 
TCGA-29-2414 TCGA-29-2427 TCGA-29-2428 TCGA-29-2431 TCGA-29-2434 TCGA-30-1714 
       86.17        62.47        45.11        42.25        11.47        38.07 
TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1860 TCGA-30-1861 
       36.26         2.47        15.68         0.26        44.91        34.78 
TCGA-30-1866 TCGA-30-1880 TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1950 
       36.62        57.57        24.26        48.79        45.57        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 
       22.45         6.71        42.51         2.17        28.73        29.06 
TCGA-36-1570 TCGA-36-1571 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       21.53        22.85         8.55        30.05        25.74        27.85 
TCGA-36-1580 TCGA-36-2529 TCGA-36-2530 TCGA-36-2534 TCGA-36-2542 TCGA-36-2543 
       24.23        35.05        33.01        29.79        21.60         2.24 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2589 
       18.31        20.52        14.17        16.14        11.47         7.56 
TCGA-42-2590 TCGA-57-1582 TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 
        7.46        24.03        21.14        28.96        25.05        25.02 
TCGA-59-2350 TCGA-59-2352 TCGA-59-2355 TCGA-59-2363 TCGA-61-1724 TCGA-61-1725 
       22.32         9.40         2.14         5.39        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1737 
       18.54        27.88         4.34        31.76        48.79        44.84 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 
        9.07        34.13        31.30        37.02        48.92        56.58 
TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 
        1.97         5.52        14.50         3.98        30.61        30.64 
TCGA-61-2087 TCGA-61-2088 TCGA-61-2094 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 
        4.80         4.77        71.74        60.62        65.49         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 
       76.83        20.68        22.22        51.91        15.88         6.35 
TCGA-61-2613 
       31.07 

$`16Q LOSS WILD-TYPE`
TCGA-04-1367 TCGA-04-1514 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1646 
       71.47        56.55       119.08        29.06        84.20        27.88 
TCGA-04-1648 TCGA-09-0364 TCGA-09-0365 TCGA-09-0369 TCGA-09-1664 TCGA-09-1672 
       28.64        29.16         9.47        35.54        74.89         5.85 
TCGA-09-2045 TCGA-09-2055 TCGA-09-2056 TCGA-10-0933 TCGA-10-0934 TCGA-13-0723 
       35.15        26.93        12.46        11.70         3.88        39.58 
TCGA-13-0725 TCGA-13-0760 TCGA-13-0768 TCGA-13-0799 TCGA-13-0800 TCGA-13-0803 
       12.39        11.54         8.42         7.79         8.12        43.82 
TCGA-13-0888 TCGA-13-0890 TCGA-13-0900 TCGA-13-0901 TCGA-13-0904 TCGA-13-0905 
       70.39        67.99        57.07        19.36        48.33        47.84 
TCGA-13-0913 TCGA-13-0921 TCGA-13-1409 TCGA-13-1477 TCGA-13-1482 TCGA-13-1484 
       29.98         4.64         6.84        54.61        61.71        98.04 
TCGA-13-1485 TCGA-13-1488 TCGA-13-1499 TCGA-13-1510 TCGA-13-2059 TCGA-13-2071 
       20.68        70.82        38.37         2.56        12.23         6.28 
TCGA-20-0996 TCGA-20-1684 TCGA-23-1021 TCGA-23-1024 TCGA-23-1026 TCGA-23-1031 
       72.20        19.07        47.54        15.39        26.83        18.87 
TCGA-23-1110 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2084 TCGA-24-0968 
       54.51        58.13         0.53       115.89        49.84        19.63 
TCGA-24-0980 TCGA-24-1423 TCGA-24-1424 TCGA-24-1435 TCGA-24-1436 TCGA-24-1467 
        7.66         6.25         6.02        43.53         8.55       105.99 
TCGA-24-1544 TCGA-24-1546 TCGA-24-1549 TCGA-24-1553 TCGA-24-1555 TCGA-24-1557 
       26.96        64.27        56.58        58.09        88.50        39.88 
TCGA-24-1564 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1845 
       25.87        88.34        48.33        38.24         8.32         3.81 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1928 TCGA-24-2027 TCGA-24-2038 
        5.75         5.49         9.80        11.05       109.68        44.48 
TCGA-24-2254 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 TCGA-25-1317 TCGA-25-1623 
       57.07        70.45        44.58        67.36         1.02        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1633 TCGA-25-1634 TCGA-25-1877 TCGA-25-2392 TCGA-25-2396 TCGA-25-2408 
       60.59        35.54        18.05         1.02         3.02        30.97 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1711 
       78.87        44.71        18.25        41.95        29.23        34.62 
TCGA-29-1764 TCGA-29-1770 TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1778 
       62.93        24.36        17.29        12.36        11.84        14.93 
TCGA-29-1784 TCGA-29-2425 TCGA-29-2429 TCGA-29-2432 TCGA-29-2436 TCGA-30-1718 
        5.36        65.00         4.87        11.84         9.76        51.91 
TCGA-30-1859 TCGA-30-1862 TCGA-30-1867 TCGA-30-1891 TCGA-31-1946 TCGA-31-1956 
       48.07         6.08         1.18        30.05        30.18        44.09 
TCGA-36-1574 TCGA-36-1581 TCGA-36-2532 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 
       22.55        24.69        29.49        25.91        25.08        23.80 
TCGA-36-2544 TCGA-42-2582 TCGA-42-2588 TCGA-42-2591 TCGA-57-1583 TCGA-57-1585 
       20.98        14.30         9.44         7.63        11.38         1.74 
TCGA-57-1586 TCGA-59-2348 TCGA-59-2349 TCGA-59-2351 TCGA-59-2354 TCGA-59-2372 
       22.32       180.16        80.12       116.12        34.39        44.78 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1734 TCGA-61-1738 TCGA-61-1901 TCGA-61-1903 
       11.11         8.05        28.47        35.80        11.41        13.02 
TCGA-61-1911 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-2002 
       42.48        67.73        43.43        15.75        38.17        17.98 
TCGA-61-2009 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2092 TCGA-61-2095 
       39.85         1.18        45.96        45.40        51.72        61.64 
TCGA-61-2096 TCGA-61-2101 TCGA-61-2110 TCGA-61-2111 TCGA-61-2614 
       58.39        55.50        44.52       125.72         8.58 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.26               0.30 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            151.99             180.16 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             28.34              28.47 
[1] "0.3 - 152.0 (28.3)" "0.3 - 180.2 (28.5)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
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"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D68V2, continuous
D68V3, multiclass
                    clus
vv                   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  OMENTUM                           2                  0
  OVARY                           384                164
  PERITONEUM (OVARY)                2                  0
D68V4, continuous
D68V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      3  385
  16Q LOSS WILD-TYPE    0  164
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 3                  0
  YES              385                164
D68V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED    311   77
  16Q LOSS WILD-TYPE  137   27
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO               311                137
  YES               77                 27

Clustering(69) Variable = 17p loss mutation analysis
D69V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED   191 223
  17P LOSS WILD-TYPE  70  62
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               414                132 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               223                 62 
$`17P LOSS MUTATED`
TCGA-04-1331 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1348 
       40.24         1.81        49.15        46.62        11.87        48.76 
TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 
       21.57        63.98        65.46        32.52        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1517 TCGA-04-1530 
       76.54        71.47        82.36        56.55        19.99       119.08 
TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 
       29.06        84.20        55.40        48.89        27.88        28.64 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 
       64.64        36.23        31.86        47.70        45.34        29.16 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1662 
        9.47        57.73        17.95        35.54         9.96        89.33 
TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 
       74.89        57.57        61.87        55.36        30.48        17.98 
TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 TCGA-09-2049 
        5.85         3.02        97.55         6.12        35.15       112.37 
TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 TCGA-10-0926 
       71.11        39.75        20.91        26.93        12.46        25.91 
TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0933 TCGA-10-0937 TCGA-10-0938 
       81.47        18.48        33.24        11.70        15.12        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0725 TCGA-13-0726 
        6.21        24.59        44.55        39.58        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 
       11.54        34.06        32.25        31.04        21.40        38.93 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 
       36.72        28.70        30.35        19.56         8.71         7.79 
TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 
        8.28         8.19        43.82        35.28        35.28        13.61 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0889 TCGA-13-0890 
      107.18        91.40        74.27        66.64        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 
       69.01        43.36        57.47        57.07        19.36        47.38 
TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       48.33        47.84        44.84        37.08        27.68        34.06 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       21.14        14.89         4.64         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1409 TCGA-13-1411 TCGA-13-1481 
        6.61         7.36         6.05         6.84         4.21        87.06 
TCGA-13-1482 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       61.71        22.39        70.82        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 TCGA-13-1501 
       49.22         4.24        54.31        37.61        13.97        32.84 
TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-2061 TCGA-13-2065 
        4.41         4.14         2.56         3.88        10.78         8.75 
TCGA-13-2071 TCGA-20-0990 TCGA-20-0991 TCGA-20-1682 TCGA-20-1684 TCGA-20-1686 
        6.28        25.94        26.20        27.48        19.07         2.93 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
        2.66        47.54        40.54        15.39        26.83        31.73 
TCGA-23-1028 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 
       49.41         8.81        29.10        18.87         2.24        51.35 
TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1117 TCGA-23-1118 TCGA-23-1120 
       54.51         3.22        31.20        33.30        86.01         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
        6.38        39.09        33.47        58.13        24.95       115.89 
TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       87.48        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 
        7.63        19.63        11.64        21.80        41.56         7.66 
TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
       22.32        54.08        63.55        47.41         6.31         6.38 
TCGA-24-1417 TCGA-24-1418 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.82         7.99         6.25         6.02         5.95         5.36 
TCGA-24-1428 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1463 
       17.36        28.34        19.17        18.67        43.53        72.92 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 
       12.46        45.14       105.99         3.42         1.18        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 
       57.37        64.27        16.21        56.58        41.06        51.91 
TCGA-24-1552 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       41.39        88.50        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 
       47.70        17.23        90.15        88.34        48.33        38.24 
TCGA-24-1842 TCGA-24-1843 TCGA-24-1845 TCGA-24-1846 TCGA-24-1847 TCGA-24-1849 
        8.32         3.48         3.81         4.37        11.28         5.75 
TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        5.49         9.80        22.65        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
        4.87       151.99        44.84        58.16       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2261 TCGA-24-2267 
       53.95        18.48        28.18        64.01         0.79        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2290 TCGA-24-2295 
       31.63        70.45        44.58         0.82        36.23        33.11 
TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       55.86        53.26         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 
       37.02         1.02        36.95         2.99        12.00         2.96 
TCGA-25-1625 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 
       18.02         7.86         0.30        56.94        60.59        35.54 
TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 
       51.22        14.93        24.99        13.02        49.05        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2401 TCGA-25-2404 
        3.02        12.00        45.01        19.99         2.96        29.00 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1691 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 
       26.96        78.87        47.18       101.75        38.53         0.79 
TCGA-29-1696 TCGA-29-1697 TCGA-29-1699 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
       33.70        31.17         0.53        59.67        18.25        41.95 
TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1764 TCGA-29-1768 TCGA-29-1769 
       34.62        17.00        85.68        62.93        31.23        22.98 
TCGA-29-1770 TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 
       24.36        22.52        12.36        11.84        12.30        14.93 
TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
        8.35         7.20         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-30-1714 
       62.47        45.11        42.25        11.84        11.47        38.07 
TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       51.91        36.26         2.47        15.68         0.26        48.07 
TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       44.91        34.78         6.08        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 
       24.26        30.05        48.79        45.57        30.18        18.77 
TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-36-1568 TCGA-36-1570 
       22.45         6.71        42.51        44.09        28.73        21.53 
TCGA-36-1575 TCGA-36-1580 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
        8.55        24.23        35.05        33.01        29.49        29.79 
TCGA-36-2537 TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.91        25.08        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-42-2582 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       20.52        14.17        14.30         7.56         7.46         7.63 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1993 TCGA-59-2348 TCGA-59-2350 
       11.38        21.14         1.74        25.05       180.16        22.32 
TCGA-59-2351 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1724 
      116.12        34.39         2.14         5.39        44.78        20.94 
TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 
       31.40        18.54        27.88        31.76        28.47        48.79 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 
       35.80         2.43        43.69         1.41         8.42        11.41 
TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1915 
       13.02        34.13        31.30        37.02        48.92        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       43.43        15.75        38.17         1.97         5.52        14.50 
TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2016 TCGA-61-2088 TCGA-61-2094 
       17.98         3.98        30.61         1.18         4.77        71.74 
TCGA-61-2095 TCGA-61-2096 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       61.64        58.39        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2613 TCGA-61-2614 
       44.52       125.72        22.22        51.91        31.07         8.58 

$`17P LOSS WILD-TYPE`
TCGA-04-1332 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 TCGA-04-1356 
       41.00         2.01        18.51        65.49        63.06        49.28 
TCGA-04-1516 TCGA-04-1525 TCGA-09-1661 TCGA-09-1665 TCGA-09-1674 TCGA-09-2043 
       41.59        38.37        38.43        41.59         8.55         6.15 
TCGA-09-2048 TCGA-09-2051 TCGA-10-0925 TCGA-10-0931 TCGA-10-0934 TCGA-10-0935 
        4.50        63.09        54.31        32.28         3.88        35.41 
TCGA-10-0936 TCGA-13-0724 TCGA-13-0768 TCGA-13-0800 TCGA-13-0883 TCGA-13-0888 
       35.80         2.73         8.42         8.12        68.91        70.39 
TCGA-13-0899 TCGA-13-0906 TCGA-13-0913 TCGA-13-0920 TCGA-13-1408 TCGA-13-1410 
       56.15        44.94        29.98        13.81         5.92         4.70 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1489 
        5.33        54.61        29.39        98.04        20.68        82.88 
TCGA-13-1499 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 TCGA-13-1512 TCGA-13-2057 
       38.37        16.57         4.21         4.77         3.09        14.24 
TCGA-13-2059 TCGA-13-2060 TCGA-20-0987 TCGA-20-0996 TCGA-20-1683 TCGA-20-1685 
       12.23         8.58        23.05        72.20        25.38        16.67 
TCGA-23-1022 TCGA-23-1114 TCGA-23-1116 TCGA-23-1119 TCGA-23-1809 TCGA-23-2079 
       42.51        68.68         4.57       129.96         0.53        91.66 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1427 TCGA-24-1436 TCGA-24-1469 TCGA-24-1474 
        7.86         0.76         4.80         8.55         9.11        22.19 
TCGA-24-1553 TCGA-24-1556 TCGA-24-1564 TCGA-24-1565 TCGA-24-1844 TCGA-24-1924 
       58.09        70.62        25.87        10.26         3.72        30.21 
TCGA-24-2026 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2262 TCGA-24-2289 
       34.82        44.48        57.07        36.16         0.36        67.36 
TCGA-24-2293 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1623 TCGA-25-1626 
       16.64        34.98        65.00        33.96        18.58        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1877 TCGA-25-1878 TCGA-25-2392 TCGA-25-2400 
        0.36        20.58        18.05        85.05         1.02        42.02 
TCGA-25-2408 TCGA-29-1690 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 TCGA-29-1710 
       30.97        44.71        68.28        16.90        18.64        29.23 
TCGA-29-1763 TCGA-29-1766 TCGA-29-1774 TCGA-29-2429 TCGA-29-2436 TCGA-31-1959 
       66.77        39.09        17.29         4.87         9.76         2.17 
TCGA-36-1569 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 
       29.06        22.85        22.55        30.05        25.74        27.85 
TCGA-36-1581 TCGA-36-2540 TCGA-36-2551 TCGA-36-2552 TCGA-42-2588 TCGA-57-1582 
       24.69        23.80        16.14        11.47         9.44        24.03 
TCGA-57-1586 TCGA-57-1992 TCGA-57-1994 TCGA-59-2349 TCGA-59-2352 TCGA-61-1721 
       22.32        28.96        25.02        80.12         9.40        11.11 
TCGA-61-1722 TCGA-61-1730 TCGA-61-1737 TCGA-61-1741 TCGA-61-1900 TCGA-61-1904 
        8.05         4.34        44.84        33.67         5.79         9.07 
TCGA-61-1911 TCGA-61-1914 TCGA-61-2009 TCGA-61-2012 TCGA-61-2017 TCGA-61-2018 
       42.48        56.58        39.85        30.64        45.96        45.40 
TCGA-61-2087 TCGA-61-2092 TCGA-61-2097 TCGA-61-2098 TCGA-61-2611 TCGA-61-2612 
        4.80        51.72        60.62        65.49        15.88         6.35 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.26               0.36 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            180.16             129.96 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            28.865             25.200 
[1] "0.3 - 180.2 (28.9)" "0.4 - 130.0 (25.2)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
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        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
[1] "hr=" "1"  
D69V2, continuous
D69V3, multiclass
                    clus
vv                   17P LOSS MUTATED 17P LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           417                131
  PERITONEUM (OVARY)                1                  1
D69V4, continuous
D69V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      1  418
  17P LOSS WILD-TYPE    2  131
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                 1                  2
  YES              418                131
D69V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED    339   80
  17P LOSS WILD-TYPE  109   24
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO               339                109
  YES               80                 24

Clustering(70) Variable = 17q loss mutation analysis
D70V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED   159 155
  17Q LOSS WILD-TYPE 102 130
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               314                232 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
               155                130 
$`17Q LOSS MUTATED`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1349 TCGA-04-1350 
        1.81        49.15        46.62        11.87        21.57        63.98 
TCGA-04-1351 TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 
       65.46        32.52        44.32        76.54        71.47        82.36 
TCGA-04-1517 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       19.99       119.08        29.06        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 
       27.88        28.64        64.64        36.23        31.86        47.70 
TCGA-04-1655 TCGA-09-0364 TCGA-09-0366 TCGA-09-0367 TCGA-09-1662 TCGA-09-1664 
       45.34        29.16        57.73        17.95        89.33        74.89 
TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 
       57.57        61.87        30.48        17.98         5.85         3.02 
TCGA-09-1675 TCGA-09-2044 TCGA-09-2049 TCGA-09-2050 TCGA-09-2053 TCGA-09-2054 
       97.55         6.12       112.37        71.11        39.75        20.91 
TCGA-09-2055 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0930 TCGA-10-0938 
       26.93        25.91        81.47        18.48        33.24        19.86 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0723 TCGA-13-0726 TCGA-13-0730 TCGA-13-0751 
        6.21        24.59        39.58        31.07        17.79        55.17 
TCGA-13-0758 TCGA-13-0761 TCGA-13-0762 TCGA-13-0766 TCGA-13-0791 TCGA-13-0793 
       11.38        34.06        32.25        21.40        38.93        28.70 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0801 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
       19.56         8.71         8.28        43.82        35.28        35.28 
TCGA-13-0884 TCGA-13-0887 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0900 
      107.18        66.64        67.99        69.01        43.36        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 
       19.36        47.38        48.33        47.84        44.84        37.08 
TCGA-13-0911 TCGA-13-0916 TCGA-13-0919 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 
       27.68        21.14        14.89         6.08        10.88         6.61 
TCGA-13-1405 TCGA-13-1407 TCGA-13-1409 TCGA-13-1411 TCGA-13-1481 TCGA-13-1482 
        7.36         6.05         6.84         4.21        87.06        61.71 
TCGA-13-1487 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1497 
       22.39        52.44        73.55        38.17        49.22        54.31 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 
       13.97        32.84        16.57         4.21         4.41         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-2059 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 
        2.56         3.88        12.23        10.78         8.75         6.28 
TCGA-20-0990 TCGA-20-0991 TCGA-20-1682 TCGA-20-1684 TCGA-20-1686 TCGA-20-1687 
       25.94        26.20        27.48        19.07         2.93         2.66 
TCGA-23-1021 TCGA-23-1024 TCGA-23-1026 TCGA-23-1028 TCGA-23-1029 TCGA-23-1031 
       47.54        15.39        26.83        49.41         8.81        18.87 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1118 TCGA-23-1120 
        2.24        54.51         3.22        31.20        86.01         4.27 
TCGA-23-1122 TCGA-23-1123 TCGA-23-2072 TCGA-23-2077 TCGA-23-2081 TCGA-23-2084 
       39.09        33.47        24.95       115.89        77.00        49.84 
TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0979 
        2.76         4.70         4.50         7.63        19.63        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 
        7.66        22.32        63.55        47.41         6.31         6.38 
TCGA-24-1418 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1428 
        7.99         6.25         6.02         5.95         5.36        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1463 TCGA-24-1466 TCGA-24-1470 
       28.34        19.17        18.67        72.92        45.14         3.42 
TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1550 
        1.18        26.96        57.37        64.27        16.21        41.06 
TCGA-24-1551 TCGA-24-1555 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       51.91        88.50        39.88        19.53        44.09        45.50 
TCGA-24-1563 TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1846 
       47.70        90.15        88.34        38.24         8.32         4.37 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
       11.28         5.75         9.80        22.65        30.21        16.41 
TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 TCGA-24-2030 TCGA-24-2033 TCGA-24-2036 
       81.11         4.87        44.84        53.95        18.48        64.01 
TCGA-24-2254 TCGA-24-2261 TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 
       57.07         0.79        47.54        70.45        44.58         0.82 
TCGA-24-2290 TCGA-24-2295 TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 
       36.23        33.11         1.02        26.93        51.06        37.02 
TCGA-25-1317 TCGA-25-1320 TCGA-25-1322 TCGA-25-1625 TCGA-25-1630 TCGA-25-1631 
        1.02        36.95         2.99        18.02         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 
       49.05        38.04         3.02        12.00        45.01        19.99 
TCGA-25-2401 TCGA-29-1691 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
        2.96        47.18        38.53         0.79        33.70        31.17 
TCGA-29-1703 TCGA-29-1707 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       59.67        41.95        34.62        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1769 TCGA-29-1771 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 
       62.93        22.98        22.52        12.36        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2427 
       14.93         8.35         7.20         5.36        34.62        62.47 
TCGA-29-2428 TCGA-29-2431 TCGA-29-2434 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
       45.11        42.25        11.47        51.91        36.26         2.47 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1880 
       15.68         0.26        48.07        44.91        34.78        57.57 
TCGA-30-1891 TCGA-31-1944 TCGA-31-1950 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       30.05        45.57        18.77         6.71        42.51        44.09 
TCGA-36-1568 TCGA-36-1575 TCGA-36-1577 TCGA-36-1580 TCGA-36-2529 TCGA-36-2530 
       28.73         8.55        25.74        24.23        35.05        33.01 
TCGA-36-2532 TCGA-36-2537 TCGA-36-2538 TCGA-36-2542 TCGA-36-2545 TCGA-36-2548 
       29.49        25.91        25.08        21.60        18.31        14.17 
TCGA-42-2589 TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-59-2348 TCGA-59-2351 
        7.56        21.14        28.96        25.05       180.16       116.12 
TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1724 TCGA-61-1725 
       34.39         2.14         5.39        44.78        20.94        31.40 
TCGA-61-1728 TCGA-61-1733 TCGA-61-1734 TCGA-61-1738 TCGA-61-1740 TCGA-61-1743 
       27.88        31.76        28.47        35.80         2.43        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1901 TCGA-61-1903 TCGA-61-1906 TCGA-61-1907 
        1.41         8.42        11.41        13.02        34.13        31.30 
TCGA-61-1910 TCGA-61-1913 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1995 
       37.02        48.92        67.73        43.43        15.75         1.97 
TCGA-61-1998 TCGA-61-2003 TCGA-61-2016 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
        5.52         3.98         1.18        45.40         4.80         4.77 
TCGA-61-2094 TCGA-61-2097 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 
       71.74        60.62        55.50         6.48        76.83        20.68 
TCGA-61-2110 TCGA-61-2613 
       44.52        31.07 

$`17Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1347 
       40.24        41.00         2.01        18.51        65.49        63.06 
TCGA-04-1348 TCGA-04-1356 TCGA-04-1364 TCGA-04-1514 TCGA-04-1516 TCGA-04-1525 
       48.76        49.28        33.67        56.55        41.59        38.37 
TCGA-09-0365 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1665 TCGA-09-1668 
        9.47        35.54         9.96        38.43        41.59        55.36 
TCGA-09-1674 TCGA-09-2043 TCGA-09-2045 TCGA-09-2048 TCGA-09-2051 TCGA-09-2056 
        8.55         6.15        35.15         4.50        63.09        12.46 
TCGA-10-0925 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 
       54.31        32.28        11.70         3.88        35.41        35.80 
TCGA-10-0937 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 TCGA-13-0755 
       15.12        44.55         2.73        12.39        15.19         2.47 
TCGA-13-0757 TCGA-13-0760 TCGA-13-0764 TCGA-13-0768 TCGA-13-0792 TCGA-13-0794 
       11.18        11.54        31.04         8.42        36.72        30.35 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0802 TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 
        7.79         8.12         8.19        13.61        68.91        91.40 
TCGA-13-0886 TCGA-13-0888 TCGA-13-0889 TCGA-13-0897 TCGA-13-0899 TCGA-13-0906 
       74.27        70.39        61.81        57.47        56.15        44.94 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-1408 
       34.06        29.98        13.81         4.64         6.41         5.92 
TCGA-13-1410 TCGA-13-1412 TCGA-13-1477 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 
        4.70         5.33        54.61        29.39        98.04        20.68 
TCGA-13-1488 TCGA-13-1489 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1507 
       70.82        82.88         4.24        37.61        38.37         4.77 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-20-0987 TCGA-20-0996 TCGA-20-1683 
        3.09        14.24         8.58        23.05        72.20        25.38 
TCGA-20-1685 TCGA-23-1022 TCGA-23-1023 TCGA-23-1027 TCGA-23-1030 TCGA-23-1109 
       16.67        42.51        40.54        31.73        29.10        51.35 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1119 TCGA-23-1121 TCGA-23-1124 
       68.68         4.57        33.30       129.96         6.38        58.13 
TCGA-23-1809 TCGA-23-2078 TCGA-23-2079 TCGA-24-0970 TCGA-24-0975 TCGA-24-1103 
        0.53        87.48        91.66        11.64        21.80        54.08 
TCGA-24-1417 TCGA-24-1419 TCGA-24-1422 TCGA-24-1427 TCGA-24-1435 TCGA-24-1436 
        7.82         7.86         0.76         4.80        43.53         8.55 
TCGA-24-1464 TCGA-24-1467 TCGA-24-1469 TCGA-24-1474 TCGA-24-1549 TCGA-24-1552 
       12.46       105.99         9.11        22.19        56.58        41.39 
TCGA-24-1553 TCGA-24-1556 TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1614 
       58.09        70.62        25.87        10.26        17.23        48.33 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1850 TCGA-24-1928 TCGA-24-2020 
        3.48         3.72         3.81         5.49        11.05       151.99 
TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2035 TCGA-24-2038 
       58.16        34.82       109.68        14.43        28.18        44.48 
TCGA-24-2260 TCGA-24-2262 TCGA-24-2271 TCGA-24-2289 TCGA-24-2293 TCGA-24-2297 
       36.16         0.36        31.63        67.36        16.64        55.86 
TCGA-24-2298 TCGA-25-1314 TCGA-25-1318 TCGA-25-1319 TCGA-25-1321 TCGA-25-1323 
       53.26        31.99        34.98        65.00        33.96        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1877 
        2.96        18.58        15.78         0.36        20.58        18.05 
TCGA-25-1878 TCGA-25-2042 TCGA-25-2392 TCGA-25-2400 TCGA-25-2404 TCGA-25-2408 
       85.05        13.02         1.02        42.02        29.00        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1698 TCGA-29-1699 
       26.96        78.87        44.71       101.75        68.28         0.53 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1705 TCGA-29-1710 TCGA-29-1766 TCGA-29-1768 
       16.90        18.64        18.25        29.23        39.09        31.23 
TCGA-29-1770 TCGA-29-1774 TCGA-29-2414 TCGA-29-2425 TCGA-29-2429 TCGA-29-2432 
       24.36        17.29        86.17        65.00         4.87        11.84 
TCGA-29-2436 TCGA-30-1714 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 
        9.76        38.07         6.08        36.62         1.18        24.26 
TCGA-30-1892 TCGA-31-1946 TCGA-31-1951 TCGA-31-1959 TCGA-36-1569 TCGA-36-1570 
       48.79        30.18        22.45         2.17        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 TCGA-36-1581 TCGA-36-2534 
       22.85        22.55        30.05        27.85        24.69        29.79 
TCGA-36-2540 TCGA-36-2543 TCGA-36-2544 TCGA-36-2547 TCGA-36-2551 TCGA-36-2552 
       23.80         2.24        20.98        20.52        16.14        11.47 
TCGA-42-2582 TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 
       14.30         9.44         7.46         7.63        24.03        11.38 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1994 TCGA-59-2349 TCGA-59-2350 TCGA-59-2352 
        1.74        22.32        25.02        80.12        22.32         9.40 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1727 TCGA-61-1730 TCGA-61-1736 TCGA-61-1737 
       11.11         8.05        18.54         4.34        48.79        44.84 
TCGA-61-1741 TCGA-61-1900 TCGA-61-1904 TCGA-61-1911 TCGA-61-1914 TCGA-61-1919 
       33.67         5.79         9.07        42.48        56.58        38.17 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2017 
       14.50        17.98        30.61        39.85        30.64        45.96 
TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2098 TCGA-61-2111 TCGA-61-2113 
       51.72        61.64        58.39        65.49       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2614 
       51.91        15.88         6.35         8.58 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.26               0.36 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            180.16             151.99 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            28.845             25.625 
[1] "0.3 - 180.2 (28.8)" "0.4 - 152.0 (25.6)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
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        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D70V2, continuous
D70V3, multiclass
                    clus
vv                   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           315                233
  PERITONEUM (OVARY)                1                  1
D70V4, continuous
D70V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      1  316
  17Q LOSS WILD-TYPE    2  233
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 1                  2
  YES              316                233
D70V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED    266   51
  17Q LOSS WILD-TYPE  182   53
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO               266                182
  YES               51                 53

Clustering(71) Variable = 18p loss mutation analysis
D71V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    88 107
  18P LOSS WILD-TYPE 173 178
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               195                351 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               107                178 
$`18P LOSS MUTATED`
TCGA-04-1335 TCGA-04-1338 TCGA-04-1343 TCGA-04-1351 TCGA-04-1362 TCGA-04-1364 
        1.81        46.62        11.87        65.46        44.32        33.67 
TCGA-04-1367 TCGA-04-1514 TCGA-04-1517 TCGA-04-1649 TCGA-04-1651 TCGA-09-1666 
       71.47        56.55        19.99        64.64        36.23        57.57 
TCGA-09-1667 TCGA-09-1672 TCGA-09-1673 TCGA-09-2044 TCGA-09-2048 TCGA-09-2053 
       61.87         5.85         3.02         6.12         4.50        39.75 
TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 TCGA-13-0714 TCGA-13-0720 
       25.91        81.47        18.48        32.28         6.21        44.55 
TCGA-13-0723 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       39.58        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0764 TCGA-13-0766 TCGA-13-0792 
       11.18        11.38        11.54        31.04        21.40        36.72 
TCGA-13-0793 TCGA-13-0794 TCGA-13-0800 TCGA-13-0803 TCGA-13-0804 TCGA-13-0807 
       28.70        30.35         8.12        43.82        35.28        13.61 
TCGA-13-0883 TCGA-13-0884 TCGA-13-0891 TCGA-13-0903 TCGA-13-0908 TCGA-13-0910 
       68.91       107.18        69.01        47.38        44.84        37.08 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0924 TCGA-13-1403 TCGA-13-1405 
       27.68        34.06        29.98         6.08        10.88         7.36 
TCGA-13-1409 TCGA-13-1487 TCGA-13-1498 TCGA-13-1501 TCGA-13-1506 TCGA-13-2061 
        6.84        22.39        37.61        32.84         4.41        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 
        8.75         6.28        25.94        27.48        25.38        19.07 
TCGA-23-1021 TCGA-23-1023 TCGA-23-1027 TCGA-23-1111 TCGA-23-1113 TCGA-23-1117 
       47.54        40.54        31.73         3.22        31.20        33.30 
TCGA-23-1118 TCGA-23-1122 TCGA-23-2072 TCGA-23-2079 TCGA-23-2084 TCGA-23-2641 
       86.01        39.09        24.95        91.66        49.84         2.76 
TCGA-23-2643 TCGA-24-0966 TCGA-24-0970 TCGA-24-0982 TCGA-24-1104 TCGA-24-1413 
        4.70         7.63        11.64        22.32        63.55         6.31 
TCGA-24-1416 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1431 TCGA-24-1463 
        6.38         6.25         6.02         5.95        19.17        72.92 
TCGA-24-1470 TCGA-24-1471 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 
        3.42         1.18        26.96        57.37        64.27        16.21 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1603 
       41.06        51.91        44.09        45.50        47.70        90.15 
TCGA-24-1614 TCGA-24-1843 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 
       48.33         3.48         5.75         9.80        22.65        16.41 
TCGA-24-1928 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2267 TCGA-24-2271 
       11.05        44.84        58.16       109.68        47.54        31.63 
TCGA-24-2298 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1320 
       53.26        26.93        51.06        37.02         1.02        36.95 
TCGA-25-1322 TCGA-25-1630 TCGA-25-1632 TCGA-25-1634 TCGA-25-1877 TCGA-25-1878 
        2.99         7.86        56.94        35.54        18.05        85.05 
TCGA-25-2042 TCGA-25-2393 TCGA-25-2404 TCGA-25-2409 TCGA-29-1694 TCGA-29-1697 
       13.02        38.04        29.00        26.96        38.53        31.17 
TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1707 TCGA-29-1762 TCGA-29-1763 
       16.90        18.64        59.67        41.95        85.68        66.77 
TCGA-29-1768 TCGA-29-1770 TCGA-29-1775 TCGA-29-1777 TCGA-29-1783 TCGA-29-2414 
       31.23        24.36        12.36        12.30         7.20        86.17 
TCGA-29-2427 TCGA-29-2428 TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 TCGA-30-1860 
       62.47        45.11        38.07        36.26        15.68        44.91 
TCGA-30-1861 TCGA-30-1862 TCGA-30-1880 TCGA-30-1891 TCGA-30-1892 TCGA-31-1946 
       34.78         6.08        57.57        30.05        48.79        30.18 
TCGA-31-1956 TCGA-36-1568 TCGA-36-1575 TCGA-36-1577 TCGA-36-1580 TCGA-36-2530 
       44.09        28.73         8.55        25.74        24.23        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2542 TCGA-36-2543 TCGA-36-2548 TCGA-36-2552 
       29.49        29.79        21.60         2.24        14.17        11.47 
TCGA-42-2588 TCGA-42-2591 TCGA-57-1582 TCGA-57-1992 TCGA-57-1993 TCGA-59-2350 
        9.44         7.63        24.03        28.96        25.05        22.32 
TCGA-59-2351 TCGA-59-2354 TCGA-59-2363 TCGA-59-2372 TCGA-61-1727 TCGA-61-1741 
      116.12        34.39         5.39        44.78        18.54        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1995 TCGA-61-2002 TCGA-61-2009 TCGA-61-2012 
       43.69         1.41         1.97        17.98        39.85        30.64 
TCGA-61-2094 TCGA-61-2098 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       71.74        65.49         6.48        76.83        20.68        44.52 
TCGA-61-2610 TCGA-61-2612 TCGA-61-2613 
       51.91         6.35        31.07 

$`18P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 
       40.24        41.00        49.15         2.01        18.51        65.49 
TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 TCGA-04-1361 
       63.06        48.76        21.57        63.98        49.28        32.52 
TCGA-04-1365 TCGA-04-1371 TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 
       76.54        82.36        41.59        38.37       119.08        29.06 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1652 
       84.20        55.40        48.89        27.88        28.64        31.86 
TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 
       47.70        45.34        29.16         9.47        57.73        17.95 
TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 
       35.54         9.96        38.43        89.33        74.89        41.59 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       55.36        30.48        17.98         8.55        97.55         6.15 
TCGA-09-2045 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2054 TCGA-09-2055 
       35.15       112.37        71.11        63.09        20.91        26.93 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       12.46        54.31        33.24        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0717 TCGA-13-0724 TCGA-13-0725 
       35.80        15.12        19.86        24.59         2.73        12.39 
TCGA-13-0761 TCGA-13-0762 TCGA-13-0768 TCGA-13-0791 TCGA-13-0795 TCGA-13-0797 
       34.06        32.25         8.42        38.93        19.56         8.71 
TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0805 TCGA-13-0885 TCGA-13-0886 
        7.79         8.28         8.19        35.28        91.40        74.27 
TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 
       66.64        70.39        61.81        67.99        43.36        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0904 TCGA-13-0905 TCGA-13-0906 
       56.15        57.07        19.36        48.33        47.84        44.94 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0921 TCGA-13-0923 TCGA-13-1404 
       21.14        14.89        13.81         4.64         6.41         6.61 
TCGA-13-1407 TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 
        6.05         5.92         4.70         4.21         5.33        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 
       87.06        61.71        29.39        98.04        20.68        70.82 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 
       82.88        52.44        73.55        38.17        49.22         4.24 
TCGA-13-1497 TCGA-13-1499 TCGA-13-1500 TCGA-13-1504 TCGA-13-1505 TCGA-13-1507 
       54.31        38.37        13.97        16.57         4.21         4.77 
TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 
        4.14         2.56         3.88         3.09        14.24        12.23 
TCGA-13-2060 TCGA-20-0987 TCGA-20-0991 TCGA-20-0996 TCGA-20-1685 TCGA-20-1686 
        8.58        23.05        26.20        72.20        16.67         2.93 
TCGA-20-1687 TCGA-23-1022 TCGA-23-1024 TCGA-23-1026 TCGA-23-1028 TCGA-23-1029 
        2.66        42.51        15.39        26.83        49.41         8.81 
TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1114 
       29.10        18.87         2.24        51.35        54.51        68.68 
TCGA-23-1116 TCGA-23-1119 TCGA-23-1120 TCGA-23-1121 TCGA-23-1123 TCGA-23-1124 
        4.57       129.96         4.27         6.38        33.47        58.13 
TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2081 TCGA-23-2645 TCGA-24-0968 
        0.53       115.89        87.48        77.00         4.50        19.63 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1105 TCGA-24-1417 
       21.80        41.56         7.66        54.08        47.41         7.82 
TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        7.99         7.86         0.76         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 
       28.34        18.67        43.53         8.55        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1474 TCGA-24-1549 TCGA-24-1552 TCGA-24-1553 
      105.99         9.11        22.19        56.58        41.39        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1564 TCGA-24-1565 
       88.50        70.62        39.88        19.53        25.87        10.26 
TCGA-24-1567 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 
       17.23        88.34        38.24         8.32         3.72         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1850 TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 
        4.37        11.28         5.49        30.21        81.11         4.87 
TCGA-24-2020 TCGA-24-2026 TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 
      151.99        34.82        14.43        53.95        18.48        28.18 
TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 
       64.01        44.48        57.07        36.16         0.79         0.36 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1314 TCGA-25-1318 TCGA-25-1319 
       33.11        55.86         1.02        31.99        34.98        65.00 
TCGA-25-1321 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
       33.96        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 TCGA-25-1633 TCGA-25-1635 TCGA-25-1870 
        0.36        20.58         0.30        60.59        51.22        14.93 
TCGA-25-1871 TCGA-25-2391 TCGA-25-2392 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       24.99        49.05         1.02         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 
       19.99        42.02         2.96        30.97        78.87        44.71 
TCGA-29-1691 TCGA-29-1693 TCGA-29-1695 TCGA-29-1696 TCGA-29-1698 TCGA-29-1699 
       47.18       101.75         0.79        33.70        68.28         0.53 
TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1764 TCGA-29-1766 
       18.25        29.23        34.62        17.00        62.93        39.09 
TCGA-29-1769 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1778 TCGA-29-1781 
       22.98        22.52        17.29        11.84        14.93         8.35 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
        5.36        34.62        65.00         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1857 TCGA-30-1859 
       11.47         9.76        51.91         2.47         0.26        48.07 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1887 TCGA-31-1944 TCGA-31-1950 TCGA-31-1951 
       36.62         1.18        24.26        45.57        18.77        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1959 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
        6.71        42.51         2.17        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1576 TCGA-36-1578 TCGA-36-1581 TCGA-36-2529 TCGA-36-2537 
       22.55        30.05        27.85        24.69        35.05        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2551 
       25.08        23.80        20.98        18.31        20.52        16.14 
TCGA-42-2582 TCGA-42-2589 TCGA-42-2590 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 
       14.30         7.56         7.46        11.38        21.14         1.74 
TCGA-57-1586 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2352 TCGA-59-2355 
       22.32        25.02       180.16        80.12         9.40         2.14 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 
       11.11         8.05        20.94        31.40        27.88         4.34 
TCGA-61-1733 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 TCGA-61-1738 TCGA-61-1740 
       31.76        28.47        48.79        44.84        35.80         2.43 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 
        8.42         5.79        11.41        13.02         9.07        34.13 
TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 
       31.30        37.02        42.48        48.92        56.58        67.73 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 
       43.43        15.75        38.17         5.52        14.50         3.98 
TCGA-61-2008 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       30.61         1.18        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2101 TCGA-61-2111 
       51.72        61.64        58.39        60.62        55.50       125.72 
TCGA-61-2113 TCGA-61-2611 TCGA-61-2614 
       22.22        15.88         8.58 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              1.02               0.26 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            116.12             180.16 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             29.98              26.83 
[1] "1.0 - 116.1 (30.0)" "0.3 - 180.2 (26.8)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
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        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D71V2, continuous
D71V3, multiclass
                    clus
vv                   18P LOSS MUTATED 18P LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           198                350
  PERITONEUM (OVARY)                0                  2
D71V4, continuous
D71V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      3  195
  18P LOSS WILD-TYPE    0  354
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 3                  0
  YES              195                354
D71V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED    167   31
  18P LOSS WILD-TYPE  281   73
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO               167                281
  YES               31                 73

Clustering(72) Variable = 18q loss mutation analysis
D72V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED   129 135
  18Q LOSS WILD-TYPE 132 150
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               264                282 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               135                150 
$`18Q LOSS MUTATED`
TCGA-04-1332 TCGA-04-1335 TCGA-04-1336 TCGA-04-1338 TCGA-04-1343 TCGA-04-1347 
       41.00         1.81        49.15        46.62        11.87        63.06 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1362 TCGA-04-1364 TCGA-04-1517 TCGA-04-1649 
       65.46        49.28        44.32        33.67        19.99        64.64 
TCGA-04-1651 TCGA-09-0364 TCGA-09-1667 TCGA-09-1669 TCGA-09-1672 TCGA-09-1673 
       36.23        29.16        61.87        30.48         5.85         3.02 
TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 
       97.55         6.15         6.12         4.50       112.37        71.11 
TCGA-09-2053 TCGA-09-2054 TCGA-09-2056 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 
       39.75        20.91        12.46        25.91        81.47        18.48 
TCGA-10-0930 TCGA-10-0931 TCGA-10-0936 TCGA-13-0714 TCGA-13-0720 TCGA-13-0726 
       33.24        32.28        35.80         6.21        44.55        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0766 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0797 
       11.54        21.40        36.72        28.70        30.35         8.71 
TCGA-13-0800 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        8.12        43.82        35.28        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 TCGA-13-0890 TCGA-13-0891 TCGA-13-0899 
      107.18        74.27        66.64        67.99        69.01        56.15 
TCGA-13-0900 TCGA-13-0903 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 
       57.07        47.38        44.94        44.84        37.08        27.68 
TCGA-13-0912 TCGA-13-0913 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       34.06        29.98        13.81         6.41         6.08        10.88 
TCGA-13-1405 TCGA-13-1408 TCGA-13-1409 TCGA-13-1411 TCGA-13-1483 TCGA-13-1487 
        7.36         5.92         6.84         4.21        29.39        22.39 
TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 
       37.61        38.37        13.97         4.21         4.41         4.14 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2061 TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 
        3.09        14.24        10.78         8.75         6.28        25.94 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 
       27.48        25.38        19.07        16.67         2.93        47.54 
TCGA-23-1023 TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1032 TCGA-23-1111 
       40.54        31.73        49.41        29.10         2.24         3.22 
TCGA-23-1113 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1120 TCGA-23-1122 
       31.20        33.30        86.01       129.96         4.27        39.09 
TCGA-23-1124 TCGA-23-2072 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 
       58.13        24.95        91.66        77.00        49.84         2.76 
TCGA-23-2643 TCGA-24-0966 TCGA-24-0970 TCGA-24-0982 TCGA-24-1104 TCGA-24-1105 
        4.70         7.63        11.64        22.32        63.55        47.41 
TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 
        6.31         6.38         7.99         0.76         6.25         6.02 
TCGA-24-1425 TCGA-24-1427 TCGA-24-1428 TCGA-24-1463 TCGA-24-1470 TCGA-24-1471 
        5.95         4.80        17.36        72.92         3.42         1.18 
TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1552 TCGA-24-1558 
       26.96        57.37        64.27        16.21        41.39        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1567 TCGA-24-1603 TCGA-24-1614 
       44.09        45.50        47.70        17.23        90.15        48.33 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1849 TCGA-24-1920 TCGA-24-1923 TCGA-24-1927 
        3.48         3.72         5.75         9.80        22.65        16.41 
TCGA-24-1928 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 
       11.05       151.99        44.84        58.16       109.68        14.43 
TCGA-24-2035 TCGA-24-2036 TCGA-24-2261 TCGA-24-2267 TCGA-24-2271 TCGA-24-2288 
       28.18        64.01         0.79        47.54        31.63         0.82 
TCGA-24-2289 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 TCGA-25-1315 TCGA-25-1316 
       67.36        53.26         1.02        26.93        51.06        37.02 
TCGA-25-1317 TCGA-25-1321 TCGA-25-1322 TCGA-25-1625 TCGA-25-1632 TCGA-25-1633 
        1.02        33.96         2.99        18.02        56.94        60.59 
TCGA-25-1634 TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2393 TCGA-25-2401 
       35.54        18.05        85.05        13.02        38.04         2.96 
TCGA-25-2409 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 TCGA-29-1701 TCGA-29-1702 
       26.96        38.53        33.70        31.17        16.90        18.64 
TCGA-29-1703 TCGA-29-1707 TCGA-29-1762 TCGA-29-1763 TCGA-29-1768 TCGA-29-1769 
       59.67        41.95        85.68        66.77        31.23        22.98 
TCGA-29-1770 TCGA-29-1775 TCGA-29-1777 TCGA-29-1781 TCGA-29-1783 TCGA-29-2414 
       24.36        12.36        12.30         8.35         7.20        86.17 
TCGA-29-2427 TCGA-29-2428 TCGA-29-2434 TCGA-30-1714 TCGA-30-1853 TCGA-30-1856 
       62.47        45.11        11.47        38.07        36.26        15.68 
TCGA-30-1857 TCGA-30-1861 TCGA-30-1862 TCGA-30-1866 TCGA-30-1880 TCGA-30-1891 
        0.26        34.78         6.08        36.62        57.57        30.05 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1956 TCGA-31-1959 TCGA-36-1570 TCGA-36-1575 
       45.57        30.18        44.09         2.17        21.53         8.55 
TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 
       25.74        27.85        24.23        33.01        29.49        29.79 
TCGA-36-2538 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2548 TCGA-36-2552 
       25.08        21.60         2.24        20.98        14.17        11.47 
TCGA-42-2588 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        9.44         7.46         7.63        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1992 TCGA-57-1993 TCGA-59-2350 TCGA-59-2354 TCGA-59-2363 
        1.74        28.96        25.05        22.32        34.39         5.39 
TCGA-59-2372 TCGA-61-1724 TCGA-61-1727 TCGA-61-1736 TCGA-61-1737 TCGA-61-1741 
       44.78        20.94        18.54        48.79        44.84        33.67 
TCGA-61-1743 TCGA-61-1895 TCGA-61-1906 TCGA-61-1911 TCGA-61-1995 TCGA-61-2002 
       43.69         1.41        34.13        42.48         1.97        17.98 
TCGA-61-2012 TCGA-61-2018 TCGA-61-2094 TCGA-61-2097 TCGA-61-2098 TCGA-61-2102 
       30.64        45.40        71.74        60.62        65.49         6.48 
TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2610 TCGA-61-2612 TCGA-61-2613 
       76.83        20.68        44.52        51.91         6.35        31.07 

$`18Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1337 TCGA-04-1342 TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 
       40.24         2.01        18.51        65.49        48.76        21.57 
TCGA-04-1350 TCGA-04-1361 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       63.98        32.52        76.54        71.47        82.36        56.55 
TCGA-04-1516 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 
       41.59        38.37       119.08        29.06        84.20        55.40 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       48.89        27.88        28.64        31.86        47.70        45.34 
TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
        9.47        57.73        17.95        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1668 TCGA-09-1670 
       89.33        74.89        41.59        57.57        55.36        17.98 
TCGA-09-1674 TCGA-09-2045 TCGA-09-2051 TCGA-09-2055 TCGA-10-0925 TCGA-10-0933 
        8.55        35.15        63.09        26.93        54.31        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0937 TCGA-10-0938 TCGA-13-0717 TCGA-13-0723 
        3.88        35.41        15.12        19.86        24.59        39.58 
TCGA-13-0724 TCGA-13-0725 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0768 
        2.73        12.39        34.06        32.25        31.04         8.42 
TCGA-13-0791 TCGA-13-0795 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0885 
       38.93        19.56         7.79         8.28         8.19        91.40 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0893 TCGA-13-0897 TCGA-13-0901 TCGA-13-0904 
       70.39        61.81        43.36        57.47        19.36        48.33 
TCGA-13-0905 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-1404 TCGA-13-1407 
       47.84        21.14        14.89         4.64         6.61         6.05 
TCGA-13-1410 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 
        4.70         5.33        54.61        87.06        61.71        98.04 
TCGA-13-1485 TCGA-13-1488 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 TCGA-13-1494 
       20.68        70.82        82.88        52.44        73.55        38.17 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1501 TCGA-13-1504 TCGA-13-1507 
       49.22         4.24        54.31        32.84        16.57         4.77 
TCGA-13-1510 TCGA-13-1511 TCGA-13-2059 TCGA-13-2060 TCGA-20-0987 TCGA-20-0991 
        2.56         3.88        12.23         8.58        23.05        26.20 
TCGA-20-0996 TCGA-20-1687 TCGA-23-1022 TCGA-23-1024 TCGA-23-1026 TCGA-23-1029 
       72.20         2.66        42.51        15.39        26.83         8.81 
TCGA-23-1031 TCGA-23-1109 TCGA-23-1110 TCGA-23-1114 TCGA-23-1116 TCGA-23-1121 
       18.87        51.35        54.51        68.68         4.57         6.38 
TCGA-23-1123 TCGA-23-1809 TCGA-23-2077 TCGA-23-2078 TCGA-23-2645 TCGA-24-0968 
       33.47         0.53       115.89        87.48         4.50        19.63 
TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-1103 TCGA-24-1417 TCGA-24-1419 
       21.80        41.56         7.66        54.08         7.82         7.86 
TCGA-24-1426 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 
        5.36        28.34        19.17        18.67        43.53         8.55 
TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1474 TCGA-24-1549 
       12.46        45.14       105.99         9.11        22.19        56.58 
TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 
       41.06        51.91        58.09        88.50        70.62        39.88 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1845 
       25.87        10.26        88.34        38.24         8.32         3.81 
TCGA-24-1846 TCGA-24-1847 TCGA-24-1850 TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 
        4.37        11.28         5.49        30.21        81.11         4.87 
TCGA-24-2026 TCGA-24-2030 TCGA-24-2033 TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 
       34.82        53.95        18.48        44.48        57.07        36.16 
TCGA-24-2262 TCGA-24-2280 TCGA-24-2281 TCGA-24-2290 TCGA-24-2293 TCGA-24-2295 
        0.36        70.45        44.58        36.23        16.64        33.11 
TCGA-24-2297 TCGA-25-1314 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1323 
       55.86        31.99        34.98        65.00        36.95        12.00 
TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 
        2.96        18.58        15.78         0.36        20.58         7.86 
TCGA-25-1631 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-2391 TCGA-25-2392 
        0.30        51.22        14.93        24.99        49.05         1.02 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2404 
        3.02        12.00        45.01        19.99        42.02        29.00 
TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1695 
       30.97        78.87        44.71        47.18       101.75         0.79 
TCGA-29-1698 TCGA-29-1699 TCGA-29-1705 TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 
       68.28         0.53        18.25        29.23        34.62        17.00 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1771 TCGA-29-1774 TCGA-29-1776 TCGA-29-1778 
       62.93        39.09        22.52        17.29        11.84        14.93 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2425 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
        5.36        34.62        65.00         4.87        42.25        11.84 
TCGA-29-2436 TCGA-30-1718 TCGA-30-1855 TCGA-30-1859 TCGA-30-1860 TCGA-30-1867 
        9.76        51.91         2.47        48.07        44.91         1.18 
TCGA-30-1887 TCGA-30-1892 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       24.26        48.79        18.77        22.45         6.71        42.51 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1581 
       28.73        29.06        22.85        22.55        30.05        24.69 
TCGA-36-2529 TCGA-36-2537 TCGA-36-2540 TCGA-36-2545 TCGA-36-2547 TCGA-36-2551 
       35.05        25.91        23.80        18.31        20.52        16.14 
TCGA-42-2582 TCGA-42-2589 TCGA-57-1586 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 
       14.30         7.56        22.32        25.02       180.16        80.12 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2355 TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 
      116.12         9.40         2.14        11.11         8.05        31.40 
TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1738 TCGA-61-1740 
       27.88         4.34        31.76        28.47        35.80         2.43 
TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1907 
        8.42         5.79        11.41        13.02         9.07        31.30 
TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 
       37.02        48.92        56.58        67.73        43.43        15.75 
TCGA-61-1919 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 
       38.17         5.52        14.50         3.98        30.61        39.85 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 TCGA-61-2088 TCGA-61-2092 TCGA-61-2095 
        1.18        45.96         4.80         4.77        51.72        61.64 
TCGA-61-2096 TCGA-61-2101 TCGA-61-2111 TCGA-61-2113 TCGA-61-2611 TCGA-61-2614 
       58.39        55.50       125.72        22.22        15.88         8.58 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.26               0.30 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            151.99             180.16 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            27.765             28.685 
[1] "0.3 - 152.0 (27.8)" "0.3 - 180.2 (28.7)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
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        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D72V2, continuous
D72V3, multiclass
                    clus
vv                   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           267                281
  PERITONEUM (OVARY)                0                  2
D72V4, continuous
D72V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      3  264
  18Q LOSS WILD-TYPE    0  285
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                 3                  0
  YES              264                285
D72V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED    223   44
  18Q LOSS WILD-TYPE  225   60
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO               223                225
  YES               44                 60

Clustering(73) Variable = 19p loss mutation analysis
D73V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    82  86
  19P LOSS WILD-TYPE 179 199
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               168                378 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                86                199 
$`19P LOSS MUTATED`
TCGA-04-1336 TCGA-04-1343 TCGA-04-1347 TCGA-04-1350 TCGA-04-1362 TCGA-04-1364 
       49.15        11.87        63.06        63.98        44.32        33.67 
TCGA-04-1365 TCGA-04-1367 TCGA-04-1516 TCGA-04-1517 TCGA-04-1638 TCGA-04-1644 
       76.54        71.47        41.59        19.99        55.40        48.89 
TCGA-04-1646 TCGA-04-1649 TCGA-04-1651 TCGA-04-1654 TCGA-04-1655 TCGA-09-0366 
       27.88        64.64        36.23        47.70        45.34        57.73 
TCGA-09-0369 TCGA-09-1661 TCGA-09-1664 TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 
       35.54        38.43        74.89        55.36        17.98         5.85 
TCGA-09-1673 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 
        3.02         4.50       112.37        71.11        63.09        39.75 
TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 TCGA-10-0931 
       26.93        12.46        54.31        25.91        18.48        32.28 
TCGA-10-0936 TCGA-10-0937 TCGA-13-0723 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       35.80        15.12        39.58        17.79        55.17         2.47 
TCGA-13-0758 TCGA-13-0762 TCGA-13-0800 TCGA-13-0803 TCGA-13-0804 TCGA-13-0885 
       11.38        32.25         8.12        43.82        35.28        91.40 
TCGA-13-0900 TCGA-13-0903 TCGA-13-0904 TCGA-13-0908 TCGA-13-0911 TCGA-13-0912 
       57.07        47.38        48.33        44.84        27.68        34.06 
TCGA-13-0919 TCGA-13-0924 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1411 
       14.89         6.08        10.88         6.61         7.36         4.21 
TCGA-13-1412 TCGA-13-1483 TCGA-13-1489 TCGA-13-1492 TCGA-13-1494 TCGA-13-1496 
        5.33        29.39        82.88        73.55        38.17         4.24 
TCGA-13-1498 TCGA-13-1505 TCGA-13-1507 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
       37.61         4.21         4.77        12.23         8.58        10.78 
TCGA-23-1027 TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 TCGA-23-1120 TCGA-23-1122 
       31.73        49.41        29.10        18.87         4.27        39.09 
TCGA-23-2081 TCGA-23-2643 TCGA-24-1418 TCGA-24-1424 TCGA-24-1434 TCGA-24-1463 
       77.00         4.70         7.99         6.02        18.67        72.92 
TCGA-24-1470 TCGA-24-1544 TCGA-24-1549 TCGA-24-1555 TCGA-24-1560 TCGA-24-1565 
        3.42        26.96        56.58        88.50        44.09        10.26 
TCGA-24-1614 TCGA-24-1843 TCGA-24-1846 TCGA-24-1847 TCGA-24-2019 TCGA-24-2024 
       48.33         3.48         4.37        11.28         4.87        58.16 
TCGA-24-2026 TCGA-24-2260 TCGA-24-2288 TCGA-24-2290 TCGA-24-2298 TCGA-25-1313 
       34.82        36.16         0.82        36.23        53.26        26.93 
TCGA-25-1316 TCGA-25-1628 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
       37.02        20.58        56.94        60.59        35.54        51.22 
TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       24.99        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2404 TCGA-29-1691 TCGA-29-1694 TCGA-29-1696 TCGA-29-1699 TCGA-29-1701 
       29.00        47.18        38.53        33.70         0.53        16.90 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1763 TCGA-29-1769 TCGA-29-1771 
       18.25        41.95        29.23        66.77        22.98        22.52 
TCGA-29-1774 TCGA-29-1776 TCGA-29-2427 TCGA-29-2428 TCGA-30-1853 TCGA-30-1860 
       17.29        11.84        62.47        45.11        36.26        44.91 
TCGA-30-1861 TCGA-30-1866 TCGA-30-1891 TCGA-31-1944 TCGA-31-1953 TCGA-31-1955 
       34.78        36.62        30.05        45.57         6.71        42.51 
TCGA-31-1956 TCGA-36-1568 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1577 
       44.09        28.73        22.85        22.55         8.55        25.74 
TCGA-36-1581 TCGA-36-2530 TCGA-36-2538 TCGA-36-2551 TCGA-42-2591 TCGA-57-1582 
       24.69        33.01        25.08        16.14         7.63        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-59-2354 TCGA-59-2372 TCGA-61-1724 TCGA-61-1730 
       11.38        21.14        34.39        44.78        20.94         4.34 
TCGA-61-1733 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1903 TCGA-61-1907 
       31.76        35.80         2.43        33.67        13.02        31.30 
TCGA-61-1995 TCGA-61-2002 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2088 
        1.97        17.98        30.64         1.18        45.96         4.77 

$`19P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81         2.01        46.62        18.51 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1349 TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 
       65.49        48.76        21.57        65.46        49.28        32.52 
TCGA-04-1371 TCGA-04-1514 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 
       82.36        56.55        38.37       119.08        29.06        84.20 
TCGA-04-1648 TCGA-04-1652 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-1659 
       28.64        31.86        29.16         9.47        17.95         9.96 
TCGA-09-1662 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1669 TCGA-09-1674 
       89.33        41.59        57.57        61.87        30.48         8.55 
TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2054 TCGA-10-0927 
       97.55         6.15         6.12        35.15        20.91        81.47 
TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0938 TCGA-13-0714 
       33.24        11.70         3.88        35.41        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 
       24.59        44.55         2.73        12.39        31.07        15.19 
TCGA-13-0757 TCGA-13-0760 TCGA-13-0761 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.18        11.54        34.06        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 
        7.79         8.28         8.19        35.28        13.61        68.91 
TCGA-13-0884 TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
      107.18        74.27        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0899 TCGA-13-0901 TCGA-13-0905 
       69.01        43.36        57.47        56.15        19.36        47.84 
TCGA-13-0906 TCGA-13-0910 TCGA-13-0913 TCGA-13-0916 TCGA-13-0920 TCGA-13-0921 
       44.94        37.08        29.98        21.14        13.81         4.64 
TCGA-13-0923 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 TCGA-13-1477 
        6.41         6.05         5.92         6.84         4.70        54.61 
TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 
       87.06        61.71        98.04        20.68        22.39        70.82 
TCGA-13-1491 TCGA-13-1495 TCGA-13-1497 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
       52.44        49.22        54.31        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 
       16.57         4.41         4.14         2.56         3.88         3.09 
TCGA-13-2057 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 
       14.24         8.75         6.28        23.05        25.94        26.20 
TCGA-20-0996 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       72.20        27.48        25.38        19.07        16.67         2.93 
TCGA-20-1687 TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 
        2.66        47.54        42.51        40.54        15.39        26.83 
TCGA-23-1029 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
        8.81         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 
       68.68         4.57        33.30        86.01       129.96         6.38 
TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 
       33.47        58.13         0.53        24.95       115.89        87.48 
TCGA-23-2079 TCGA-23-2084 TCGA-23-2641 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       91.66        49.84         2.76         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 
       63.55        47.41         6.31         6.38         7.82         7.86 
TCGA-24-1422 TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 
        0.76         6.25         5.95         5.36         4.80        17.36 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1435 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 
       28.34        19.17        43.53         8.55        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1471 TCGA-24-1474 TCGA-24-1545 TCGA-24-1546 
      105.99         9.11         1.18        22.19        57.37        64.27 
TCGA-24-1548 TCGA-24-1550 TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1556 
       16.21        41.06        51.91        41.39        58.09        70.62 
TCGA-24-1557 TCGA-24-1558 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1567 
       39.88        19.53        45.50        47.70        25.87        17.23 
TCGA-24-1603 TCGA-24-1604 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 
       90.15        88.34        38.24         8.32         3.72         3.81 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2027 TCGA-24-2029 
       11.05        81.11       151.99        44.84       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2289 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1314 
       67.36        16.64        33.11        55.86         1.02        31.99 
TCGA-25-1315 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       51.06         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1870 TCGA-25-1877 TCGA-25-2396 
        0.36         7.86         0.30        14.93        18.05         3.02 
TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2408 
       12.00        45.01        19.99        42.02         2.96        30.97 
TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1695 TCGA-29-1697 
       26.96        78.87        44.71       101.75         0.79        31.17 
TCGA-29-1698 TCGA-29-1702 TCGA-29-1703 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 
       68.28        18.64        59.67        34.62        17.00        85.68 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 TCGA-29-1775 TCGA-29-1777 
       62.93        39.09        31.23        24.36        12.36        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 
       14.93         8.35         7.20         5.36        34.62        86.17 
TCGA-29-2425 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 
       65.00         4.87        42.25        11.84        11.47         9.76 
TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 
       38.07        51.91         2.47        15.68         0.26        48.07 
TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1892 TCGA-31-1946 
        6.08         1.18        57.57        24.26        48.79        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1959 TCGA-36-1569 TCGA-36-1570 TCGA-36-1576 
       18.77        22.45         2.17        29.06        21.53        30.05 
TCGA-36-1578 TCGA-36-1580 TCGA-36-2529 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       27.85        24.23        35.05        29.49        29.79        25.91 
TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 
       23.80        21.60         2.24        20.98        18.31        20.52 
TCGA-36-2548 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 
       14.17        11.47        14.30         9.44         7.56         7.46 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2355 TCGA-59-2363 
       80.12        22.32       116.12         9.40         2.14         5.39 
TCGA-61-1721 TCGA-61-1722 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1734 
       11.11         8.05        31.40        18.54        27.88        28.47 
TCGA-61-1736 TCGA-61-1737 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
       48.79        44.84        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       11.41         9.07        34.13        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1998 
       56.58        67.73        43.43        15.75        38.17         5.52 
TCGA-61-2000 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2018 TCGA-61-2087 
       14.50         3.98        30.61        39.85        45.40         4.80 
TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 
       51.72        71.74        61.64        58.39        60.62        65.49 
TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 
       55.50         6.48        76.83        20.68        44.52       125.72 
TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       22.22        51.91        15.88         6.35        31.07         8.58 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.53               0.26 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            112.37             180.16 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            31.515             26.070 
[1] "0.5 - 112.4 (31.5)" "0.3 - 180.2 (26.1)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D73V2, continuous
D73V3, multiclass
                    clus
vv                   19P LOSS MUTATED 19P LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           168                380
  PERITONEUM (OVARY)                0                  2
D73V4, continuous
D73V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      2  167
  19P LOSS WILD-TYPE    1  382
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 2                  1
  YES              167                382
D73V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED    137   32
  19P LOSS WILD-TYPE  311   72
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO               137                311
  YES               32                 72

Clustering(74) Variable = 19q loss mutation analysis
D74V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    92  93
  19Q LOSS WILD-TYPE 169 192
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               185                361 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                93                192 
$`19Q LOSS MUTATED`
TCGA-04-1335 TCGA-04-1336 TCGA-04-1347 TCGA-04-1349 TCGA-04-1350 TCGA-04-1356 
        1.81        49.15        63.06        21.57        63.98        49.28 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1638 
       44.32        33.67        76.54        71.47        82.36        55.40 
TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1654 TCGA-04-1655 TCGA-09-0366 
       48.89        27.88        28.64        47.70        45.34        57.73 
TCGA-09-1659 TCGA-09-1661 TCGA-09-1664 TCGA-09-1665 TCGA-09-1667 TCGA-09-1668 
        9.96        38.43        74.89        41.59        61.87        55.36 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1675 TCGA-09-2048 TCGA-09-2049 
       17.98         5.85         3.02        97.55         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
       71.11        63.09        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0928 TCGA-10-0931 TCGA-10-0936 TCGA-10-0937 
       54.31        25.91        18.48        32.28        35.80        15.12 
TCGA-10-0938 TCGA-13-0723 TCGA-13-0726 TCGA-13-0755 TCGA-13-0762 TCGA-13-0764 
       19.86        39.58        31.07         2.47        32.25        31.04 
TCGA-13-0800 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0886 
        8.12        43.82        35.28        35.28        13.61        74.27 
TCGA-13-0899 TCGA-13-0903 TCGA-13-0908 TCGA-13-0911 TCGA-13-0912 TCGA-13-0919 
       56.15        47.38        44.84        27.68        34.06        14.89 
TCGA-13-0921 TCGA-13-1403 TCGA-13-1404 TCGA-13-1405 TCGA-13-1412 TCGA-13-1483 
        4.64        10.88         6.61         7.36         5.33        29.39 
TCGA-13-1489 TCGA-13-1491 TCGA-13-1494 TCGA-13-1496 TCGA-13-1498 TCGA-13-1505 
       82.88        52.44        38.17         4.24        37.61         4.21 
TCGA-13-1510 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 TCGA-13-2065 TCGA-20-1682 
        2.56        12.23         8.58        10.78         8.75        27.48 
TCGA-23-1021 TCGA-23-1024 TCGA-23-1028 TCGA-23-1030 TCGA-23-1031 TCGA-23-1120 
       47.54        15.39        49.41        29.10        18.87         4.27 
TCGA-23-1123 TCGA-23-1124 TCGA-23-2079 TCGA-23-2081 TCGA-23-2643 TCGA-24-0966 
       33.47        58.13        91.66        77.00         4.70         7.63 
TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1413 TCGA-24-1424 TCGA-24-1434 
       41.56         7.66        22.32         6.31         6.02        18.67 
TCGA-24-1435 TCGA-24-1463 TCGA-24-1467 TCGA-24-1470 TCGA-24-1549 TCGA-24-1555 
       43.53        72.92       105.99         3.42        56.58        88.50 
TCGA-24-1560 TCGA-24-1565 TCGA-24-1843 TCGA-24-1846 TCGA-24-2019 TCGA-24-2024 
       44.09        10.26         3.48         4.37         4.87        58.16 
TCGA-24-2026 TCGA-24-2260 TCGA-24-2290 TCGA-24-2298 TCGA-25-1315 TCGA-25-1316 
       34.82        36.16        36.23        53.26        51.06        37.02 
TCGA-25-1319 TCGA-25-1628 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
       65.00        20.58        56.94        60.59        35.54        51.22 
TCGA-25-1878 TCGA-25-2392 TCGA-25-2393 TCGA-25-2396 TCGA-25-2399 TCGA-25-2400 
       85.05         1.02        38.04         3.02        19.99        42.02 
TCGA-25-2409 TCGA-29-1694 TCGA-29-1696 TCGA-29-1699 TCGA-29-1703 TCGA-29-1705 
       26.96        38.53        33.70         0.53        59.67        18.25 
TCGA-29-1707 TCGA-29-1710 TCGA-29-1763 TCGA-29-1769 TCGA-29-1771 TCGA-29-1778 
       41.95        29.23        66.77        22.98        22.52        14.93 
TCGA-29-1783 TCGA-29-2427 TCGA-30-1853 TCGA-30-1861 TCGA-30-1866 TCGA-30-1891 
        7.20        62.47        36.26        34.78        36.62        30.05 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 
       45.57        30.18        18.77         6.71        42.51        44.09 
TCGA-36-1568 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 TCGA-36-1580 
       28.73        21.53        22.85        22.55         8.55        24.23 
TCGA-36-1581 TCGA-36-2530 TCGA-36-2534 TCGA-36-2538 TCGA-36-2547 TCGA-36-2551 
       24.69        33.01        29.79        25.08        20.52        16.14 
TCGA-57-1583 TCGA-57-1584 TCGA-59-2354 TCGA-59-2355 TCGA-59-2372 TCGA-61-1724 
       11.38        21.14        34.39         2.14        44.78        20.94 
TCGA-61-1725 TCGA-61-1728 TCGA-61-1733 TCGA-61-1738 TCGA-61-1903 TCGA-61-1907 
       31.40        27.88        31.76        35.80        13.02        31.30 
TCGA-61-1995 TCGA-61-2000 TCGA-61-2002 TCGA-61-2016 TCGA-61-2017 TCGA-61-2087 
        1.97        14.50        17.98         1.18        45.96         4.80 
TCGA-61-2088 TCGA-61-2094 TCGA-61-2096 TCGA-61-2102 TCGA-61-2610 
        4.77        71.74        58.39         6.48        51.91 

$`19Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 TCGA-04-1343 
       40.24        41.00         2.01        46.62        18.51        11.87 
TCGA-04-1346 TCGA-04-1348 TCGA-04-1351 TCGA-04-1361 TCGA-04-1514 TCGA-04-1516 
       65.49        48.76        65.46        32.52        56.55        41.59 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1649 
       19.99        38.37       119.08        29.06        84.20        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-09-0364 TCGA-09-0365 TCGA-09-0367 TCGA-09-0369 
       36.23        31.86        29.16         9.47        17.95        35.54 
TCGA-09-1662 TCGA-09-1666 TCGA-09-1669 TCGA-09-1674 TCGA-09-2043 TCGA-09-2044 
       89.33        57.57        30.48         8.55         6.15         6.12 
TCGA-09-2045 TCGA-10-0927 TCGA-10-0930 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       35.15        81.47        33.24        11.70         3.88        35.41 
TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 TCGA-13-0725 TCGA-13-0727 
        6.21        24.59        44.55         2.73        12.39        15.19 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 
       17.79        55.17        11.18        11.38        11.54        34.06 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0801 TCGA-13-0802 TCGA-13-0883 
       19.56         8.71         7.79         8.28         8.19        68.91 
TCGA-13-0884 TCGA-13-0885 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 
      107.18        91.40        66.64        70.39        61.81        67.99 
TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0904 
       69.01        43.36        57.47        57.07        19.36        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0910 TCGA-13-0913 TCGA-13-0916 TCGA-13-0920 
       47.84        44.94        37.08        29.98        21.14        13.81 
TCGA-13-0923 TCGA-13-0924 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.41         6.08         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1484 TCGA-13-1485 
        4.21        54.61        87.06        61.71        98.04        20.68 
TCGA-13-1487 TCGA-13-1488 TCGA-13-1492 TCGA-13-1495 TCGA-13-1497 TCGA-13-1499 
       22.39        70.82        73.55        49.22        54.31        38.37 
TCGA-13-1500 TCGA-13-1501 TCGA-13-1504 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       13.97        32.84        16.57         4.41         4.77         4.14 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 
        3.88         3.09        14.24         6.28        23.05        25.94 
TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 
       26.20        72.20        25.38        19.07        16.67         2.93 
TCGA-20-1687 TCGA-23-1022 TCGA-23-1023 TCGA-23-1026 TCGA-23-1027 TCGA-23-1029 
        2.66        42.51        40.54        26.83        31.73         8.81 
TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 
        2.24        51.35        54.51         3.22        31.20        68.68 
TCGA-23-1116 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1121 TCGA-23-1122 
        4.57        33.30        86.01       129.96         6.38        39.09 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2084 TCGA-23-2641 
        0.53        24.95       115.89        87.48        49.84         2.76 
TCGA-23-2645 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-1103 TCGA-24-1104 
        4.50        19.63        11.64        21.80        54.08        63.55 
TCGA-24-1105 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 
       47.41         6.38         7.82         7.99         7.86         0.76 
TCGA-24-1423 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1430 
        6.25         5.95         5.36         4.80        17.36        28.34 
TCGA-24-1431 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1469 TCGA-24-1471 
       19.17         8.55        12.46        45.14         9.11         1.18 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1550 
       22.19        26.96        57.37        64.27        16.21        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 
       51.91        41.39        58.09        70.62        39.88        19.53 
TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 
       45.50        47.70        25.87        17.23        90.15        88.34 
TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 
       48.33        38.24         8.32         3.72         3.81        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2027 TCGA-24-2029 
       11.05        81.11       151.99        44.84       109.68        14.43 
TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 TCGA-24-2254 
       53.95        18.48        28.18        64.01        44.48        57.07 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 
        0.79         0.36        47.54        31.63        70.45        44.58 
TCGA-24-2288 TCGA-24-2289 TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 
        0.82        67.36        16.64        33.11        55.86         1.02 
TCGA-25-1313 TCGA-25-1314 TCGA-25-1317 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 
       26.93        31.99         1.02        34.98        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1630 TCGA-25-1631 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 
        0.36         7.86         0.30        14.93        24.99        18.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2397 TCGA-25-2398 TCGA-25-2401 TCGA-25-2404 
       13.02        49.05        12.00        45.01         2.96        29.00 
TCGA-25-2408 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1693 TCGA-29-1695 
       30.97        78.87        44.71        47.18       101.75         0.79 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 TCGA-29-1711 TCGA-29-1761 
       31.17        68.28        16.90        18.64        34.62        17.00 
TCGA-29-1762 TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1770 TCGA-29-1774 
       85.68        62.93        39.09        31.23        24.36        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 TCGA-29-1785 
       12.36        11.84        12.30         8.35         5.36        34.62 
TCGA-29-2414 TCGA-29-2425 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 
       86.17        65.00        45.11         4.87        42.25        11.84 
TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 TCGA-30-1855 TCGA-30-1856 
       11.47         9.76        38.07        51.91         2.47        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1867 TCGA-30-1880 
        0.26        48.07        44.91         6.08         1.18        57.57 
TCGA-30-1887 TCGA-30-1892 TCGA-31-1951 TCGA-31-1959 TCGA-36-1569 TCGA-36-1576 
       24.26        48.79        22.45         2.17        29.06        30.05 
TCGA-36-1577 TCGA-36-1578 TCGA-36-2529 TCGA-36-2532 TCGA-36-2537 TCGA-36-2540 
       25.74        27.85        35.05        29.49        25.91        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2548 TCGA-36-2552 
       21.60         2.24        20.98        18.31        14.17        11.47 
TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
       14.30         9.44         7.56         7.46         7.63        24.03 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2363 TCGA-61-1721 
       80.12        22.32       116.12         9.40         5.39        11.11 
TCGA-61-1722 TCGA-61-1727 TCGA-61-1730 TCGA-61-1734 TCGA-61-1736 TCGA-61-1737 
        8.05        18.54         4.34        28.47        48.79        44.84 
TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 
        2.43        33.67        43.69         1.41         8.42         5.79 
TCGA-61-1901 TCGA-61-1904 TCGA-61-1906 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 
       11.41         9.07        34.13        37.02        42.48        48.92 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1998 
       56.58        67.73        43.43        15.75        38.17         5.52 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2018 TCGA-61-2092 
        3.98        30.61        39.85        30.64        45.40        51.72 
TCGA-61-2095 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2104 TCGA-61-2109 
       61.64        60.62        65.49        55.50        76.83        20.68 
TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
       44.52       125.72        22.22        15.88         6.35        31.07 
TCGA-61-2614 
        8.58 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.53               0.26 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            112.37             180.16 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             31.07              25.87 
[1] "0.5 - 112.4 (31.1)" "0.3 - 180.2 (25.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D74V2, continuous
D74V3, multiclass
                    clus
vv                   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           185                363
  PERITONEUM (OVARY)                0                  2
D74V4, continuous
D74V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      0  186
  19Q LOSS WILD-TYPE    3  363
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 0                  3
  YES              186                363
D74V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED    150   36
  19Q LOSS WILD-TYPE  298   68
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO               150                298
  YES               36                 68

Clustering(75) Variable = 20p loss mutation analysis
D75V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    28  17
  20P LOSS WILD-TYPE 233 268
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                45                501 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                17                268 
$`20P LOSS MUTATED`
TCGA-04-1336 TCGA-04-1371 TCGA-04-1536 TCGA-09-2054 TCGA-10-0928 TCGA-10-0930 
       49.15        82.36        29.06        20.91        18.48        33.24 
TCGA-13-0804 TCGA-13-0893 TCGA-13-0897 TCGA-13-0921 TCGA-13-1410 TCGA-13-1489 
       35.28        43.36        57.47         4.64         4.70        82.88 
TCGA-13-1494 TCGA-13-2071 TCGA-20-1682 TCGA-20-1687 TCGA-23-1022 TCGA-23-1028 
       38.17         6.28        27.48         2.66        42.51        49.41 
TCGA-23-1118 TCGA-23-1119 TCGA-24-1417 TCGA-24-1419 TCGA-24-1428 TCGA-24-1435 
       86.01       129.96         7.82         7.86        17.36        43.53 
TCGA-24-1463 TCGA-24-1471 TCGA-24-1552 TCGA-24-1563 TCGA-24-1603 TCGA-24-1846 
       72.92         1.18        41.39        47.70        90.15         4.37 
TCGA-24-2298 TCGA-25-2392 TCGA-29-1693 TCGA-29-1711 TCGA-29-1781 TCGA-29-2434 
       53.26         1.02       101.75        34.62         8.35        11.47 
TCGA-29-2436 TCGA-30-1853 TCGA-30-1855 TCGA-30-1866 TCGA-36-1577 TCGA-61-1734 
        9.76        36.26         2.47        36.62        25.74        28.47 
TCGA-61-1737 TCGA-61-2087 TCGA-61-2088 
       44.84         4.80         4.77 

$`20P LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 
       71.47        56.55        41.59        19.99        38.37       119.08 
TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 
       84.20        55.40        48.89        27.88        28.64        64.64 
TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       36.23        31.86        47.70        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 TCGA-09-1662 
       57.73        17.95        35.54         9.96        38.43        89.33 
TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       74.89        41.59        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2043 
       17.98         5.85         3.02         8.55        97.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
        6.12        35.15         4.50       112.37        71.11        63.09 
TCGA-09-2053 TCGA-09-2055 TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 
       39.75        26.93        12.46        54.31        25.91        81.47 
TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 
       32.28        11.70         3.88        35.41        35.80        15.12 
TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 
       19.86         6.21        24.59        44.55        39.58         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 
       12.39        31.07        15.19        17.79        55.17         2.47 
TCGA-13-0757 TCGA-13-0758 TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 
       11.18        11.38        11.54        34.06        32.25        31.04 
TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 
       21.40         8.42        38.93        36.72        28.70        30.35 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       19.56         8.71         7.79         8.12         8.28         8.19 
TCGA-13-0803 TCGA-13-0805 TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 
       43.82        35.28        13.61        68.91       107.18        91.40 
TCGA-13-0886 TCGA-13-0887 TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 
       74.27        66.64        70.39        61.81        67.99        69.01 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       44.94        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       21.14        14.89        13.81         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1411 
        6.61         7.36         6.05         5.92         6.84         4.21 
TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 
        5.33        54.61        87.06        61.71        29.39        98.04 
TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 TCGA-13-1495 
       20.68        22.39        70.82        52.44        73.55        49.22 
TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
        4.24        54.31        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 TCGA-13-1510 
       16.57         4.21         4.41         4.77         4.14         2.56 
TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2061 
        3.88         3.09        14.24        12.23         8.58        10.78 
TCGA-13-2065 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 
        8.75        23.05        25.94        26.20        72.20        25.38 
TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-23-1021 TCGA-23-1023 TCGA-23-1024 
       19.07        16.67         2.93        47.54        40.54        15.39 
TCGA-23-1026 TCGA-23-1027 TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 
       26.83        31.73         8.81        29.10        18.87         2.24 
TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 
       51.35        54.51         3.22        31.20        68.68         4.57 
TCGA-23-1117 TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 
       33.30         4.27         6.38        39.09        33.47        58.13 
TCGA-23-1809 TCGA-23-2072 TCGA-23-2077 TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 
        0.53        24.95       115.89        87.48        91.66        77.00 
TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 
       49.84         2.76         4.70         4.50         7.63        19.63 
TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 
       11.64        21.80        41.56         7.66        22.32        54.08 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1418 TCGA-24-1422 
       63.55        47.41         6.31         6.38         7.99         0.76 
TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 
        6.25         6.02         5.95         5.36         4.80        28.34 
TCGA-24-1431 TCGA-24-1434 TCGA-24-1436 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 
       19.17        18.67         8.55        12.46        45.14       105.99 
TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 
        9.11         3.42        22.19        26.96        57.37        64.27 
TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 TCGA-24-1555 
       16.21        56.58        41.06        51.91        58.09        88.50 
TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 TCGA-24-1564 
       70.62        39.88        19.53        44.09        45.50        25.87 
TCGA-24-1565 TCGA-24-1567 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1842 
       10.26        17.23        88.34        48.33        38.24         8.32 
TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 TCGA-24-1849 TCGA-24-1850 
        3.48         3.72         3.81        11.28         5.75         5.49 
TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 TCGA-24-1928 TCGA-24-1930 
        9.80        22.65        30.21        16.41        11.05        81.11 
TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 TCGA-24-2026 TCGA-24-2027 
        4.87       151.99        44.84        58.16        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 TCGA-24-2038 
       14.43        53.95        18.48        28.18        64.01        44.48 
TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 TCGA-24-2271 
       57.07        36.16         0.79         0.36        47.54        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 TCGA-24-2293 
       70.45        44.58         0.82        67.36        36.23        16.64 
TCGA-24-2295 TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 
       33.11        55.86         1.02        26.93        31.99        51.06 
TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 
       37.02         1.02        34.98        65.00        36.95        33.96 
TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1625 TCGA-25-1626 
        2.99        12.00         2.96        18.58        18.02        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 
        0.36        20.58         7.86         0.30        56.94        60.59 
TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 TCGA-25-1877 TCGA-25-1878 
       35.54        51.22        14.93        24.99        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 
       13.02        49.05        38.04         3.02        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 
       78.87        44.71        47.18        38.53         0.79        33.70 
TCGA-29-1697 TCGA-29-1698 TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 
       31.17        68.28         0.53        16.90        18.64        59.67 
TCGA-29-1705 TCGA-29-1707 TCGA-29-1710 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 
       18.25        41.95        29.23        17.00        85.68        66.77 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 
       62.93        39.09        31.23        22.98        24.36        22.52 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 
       17.29        12.36        11.84        12.30        14.93         7.20 
TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 
        5.36        34.62        86.17        65.00        62.47        45.11 
TCGA-29-2429 TCGA-29-2431 TCGA-29-2432 TCGA-30-1714 TCGA-30-1718 TCGA-30-1856 
        4.87        42.25        11.84        38.07        51.91        15.68 
TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 TCGA-30-1867 
        0.26        48.07        44.91        34.78         6.08         1.18 
TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 TCGA-31-1944 TCGA-31-1946 
       57.57        24.26        30.05        48.79        45.57        30.18 
TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 TCGA-31-1956 TCGA-31-1959 
       18.77        22.45         6.71        42.51        44.09         2.17 
TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 TCGA-36-1574 TCGA-36-1575 
       28.73        29.06        21.53        22.85        22.55         8.55 
TCGA-36-1576 TCGA-36-1578 TCGA-36-1580 TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 
       30.05        27.85        24.23        24.69        35.05        33.01 
TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 
       29.49        29.79        25.91        25.08        23.80        21.60 
TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 
        2.24        20.98        18.31        20.52        14.17        16.14 
TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 
       11.47        14.30         9.44         7.56         7.46         7.63 
TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 
       24.03        11.38        21.14         1.74        22.32        28.96 
TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 
       25.05        25.02       180.16        80.12        22.32       116.12 
TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 
        9.40        34.39         2.14         5.39        44.78        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 
        8.05        20.94        31.40        18.54        27.88         4.34 
TCGA-61-1733 TCGA-61-1736 TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 
       31.76        48.79        35.80         2.43        33.67        43.69 
TCGA-61-1895 TCGA-61-1899 TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 
        1.41         8.42         5.79        11.41        13.02         9.07 
TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 
       34.13        31.30        37.02        42.48        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 
       67.73        43.43        15.75        38.17         1.97         5.52 
TCGA-61-2000 TCGA-61-2002 TCGA-61-2003 TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 
       14.50        17.98         3.98        30.61        39.85        30.64 
TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 
        1.18        45.96        45.40        51.72        71.74        61.64 
TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 
       58.39        60.62        65.49        55.50         6.48        76.83 
TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 
       20.68        44.52       125.72        22.22        51.91        15.88 
TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
        6.35        31.07         8.58 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              1.02               0.26 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            129.96             180.16 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             33.24              27.88 
[1] "1.0 - 130.0 (33.2)" "0.3 - 180.2 (27.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
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"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D75V2, continuous
D75V3, multiclass
                    clus
vv                   20P LOSS MUTATED 20P LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            45                503
  PERITONEUM (OVARY)                0                  2
D75V4, continuous
D75V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      1   44
  20P LOSS WILD-TYPE    2  505
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 1                  2
  YES               44                505
D75V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     38    7
  20P LOSS WILD-TYPE  410   97
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                38                410
  YES                7                 97

Clustering(76) Variable = 20q loss mutation analysis
D76V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED    15   8
  20Q LOSS WILD-TYPE 246 277
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                23                523 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 8                277 
$`20Q LOSS MUTATED`
TCGA-04-1336 TCGA-10-0928 TCGA-13-0804 TCGA-13-0921 TCGA-13-1489 TCGA-13-1494 
       49.15        18.48        35.28         4.64        82.88        38.17 
TCGA-13-2059 TCGA-23-1028 TCGA-23-1118 TCGA-23-1119 TCGA-23-2072 TCGA-24-1428 
       12.23        49.41        86.01       129.96        24.95        17.36 
TCGA-24-1471 TCGA-24-1552 TCGA-24-1563 TCGA-24-1846 TCGA-24-2030 TCGA-29-1781 
        1.18        41.39        47.70         4.37        53.95         8.35 
TCGA-30-1853 TCGA-30-1855 TCGA-61-1734 TCGA-61-2002 TCGA-61-2088 
       36.26         2.47        28.47        17.98         4.77 

$`20Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1335 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00         1.81         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 
       11.87        65.49        63.06        48.76        21.57        63.98 
TCGA-04-1351 TCGA-04-1356 TCGA-04-1361 TCGA-04-1362 TCGA-04-1364 TCGA-04-1365 
       65.46        49.28        32.52        44.32        33.67        76.54 
TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 TCGA-04-1517 TCGA-04-1525 
       71.47        82.36        56.55        41.59        19.99        38.37 
TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 TCGA-04-1646 
      119.08        29.06        84.20        55.40        48.89        27.88 
TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1654 TCGA-04-1655 
       28.64        64.64        36.23        31.86        47.70        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1659 
       29.16         9.47        57.73        17.95        35.54         9.96 
TCGA-09-1661 TCGA-09-1662 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       38.43        89.33        74.89        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1669 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 
       55.36        30.48        17.98         5.85         3.02         8.55 
TCGA-09-1675 TCGA-09-2043 TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2049 
       97.55         6.15         6.12        35.15         4.50       112.37 
TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 TCGA-09-2056 
       71.11        63.09        39.75        20.91        26.93        12.46 
TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0931 TCGA-10-0933 
       54.31        25.91        81.47        33.24        32.28        11.70 
TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-10-0937 TCGA-10-0938 TCGA-13-0714 
        3.88        35.41        35.80        15.12        19.86         6.21 
TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 TCGA-13-0724 TCGA-13-0725 TCGA-13-0726 
       24.59        44.55        39.58         2.73        12.39        31.07 
TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0755 TCGA-13-0757 TCGA-13-0758 
       15.19        17.79        55.17         2.47        11.18        11.38 
TCGA-13-0760 TCGA-13-0761 TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 
       11.54        34.06        32.25        31.04        21.40         8.42 
TCGA-13-0791 TCGA-13-0792 TCGA-13-0793 TCGA-13-0794 TCGA-13-0795 TCGA-13-0797 
       38.93        36.72        28.70        30.35        19.56         8.71 
TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0805 
        7.79         8.12         8.28         8.19        43.82        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 
       13.61        68.91       107.18        91.40        74.27        66.64 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0891 TCGA-13-0893 TCGA-13-0897 
       70.39        61.81        67.99        69.01        43.36        57.47 
TCGA-13-0899 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 
       56.15        57.07        19.36        47.38        48.33        47.84 
TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 
       44.94        44.84        37.08        27.68        34.06        29.98 
TCGA-13-0916 TCGA-13-0919 TCGA-13-0920 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 
       21.14        14.89        13.81         6.41         6.08        10.88 
TCGA-13-1404 TCGA-13-1405 TCGA-13-1407 TCGA-13-1408 TCGA-13-1409 TCGA-13-1410 
        6.61         7.36         6.05         5.92         6.84         4.70 
TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 TCGA-13-1482 TCGA-13-1483 
        4.21         5.33        54.61        87.06        61.71        29.39 
TCGA-13-1484 TCGA-13-1485 TCGA-13-1487 TCGA-13-1488 TCGA-13-1491 TCGA-13-1492 
       98.04        20.68        22.39        70.82        52.44        73.55 
TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 
       49.22         4.24        54.31        37.61        38.37        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1510 TCGA-13-1511 TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-13-2061 
        2.56         3.88         3.09        14.24         8.58        10.78 
TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 
        8.75         6.28        23.05        25.94        26.20        72.20 
TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1686 TCGA-20-1687 
       27.48        25.38        19.07        16.67         2.93         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 
       47.54        42.51        40.54        15.39        26.83        31.73 
TCGA-23-1029 TCGA-23-1030 TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 
        8.81        29.10        18.87         2.24        51.35        54.51 
TCGA-23-1111 TCGA-23-1113 TCGA-23-1114 TCGA-23-1116 TCGA-23-1117 TCGA-23-1120 
        3.22        31.20        68.68         4.57        33.30         4.27 
TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 
        6.38        39.09        33.47        58.13         0.53       115.89 
TCGA-23-2078 TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       87.48        91.66        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0968 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 
        4.50         7.63        19.63        11.64        21.80        41.56 
TCGA-24-0980 TCGA-24-0982 TCGA-24-1103 TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 
        7.66        22.32        54.08        63.55        47.41         6.31 
TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
        6.38         7.82         7.99         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 
        6.02         5.95         5.36         4.80        28.34        19.17 
TCGA-24-1434 TCGA-24-1435 TCGA-24-1436 TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 
       18.67        43.53         8.55        72.92        12.46        45.14 
TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 
      105.99         9.11         3.42        22.19        26.96        57.37 
TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1551 TCGA-24-1553 
       64.27        16.21        56.58        41.06        51.91        58.09 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1558 TCGA-24-1560 TCGA-24-1562 
       88.50        70.62        39.88        19.53        44.09        45.50 
TCGA-24-1564 TCGA-24-1565 TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 
       25.87        10.26        17.23        90.15        88.34        48.33 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 
       38.24         8.32         3.48         3.72         3.81        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 TCGA-24-1924 TCGA-24-1927 
        5.75         5.49         9.80        22.65        30.21        16.41 
TCGA-24-1928 TCGA-24-1930 TCGA-24-2019 TCGA-24-2020 TCGA-24-2023 TCGA-24-2024 
       11.05        81.11         4.87       151.99        44.84        58.16 
TCGA-24-2026 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
       34.82       109.68        14.43        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2267 
       44.48        57.07        36.16         0.79         0.36        47.54 
TCGA-24-2271 TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2290 
       31.63        70.45        44.58         0.82        67.36        36.23 
TCGA-24-2293 TCGA-24-2295 TCGA-24-2297 TCGA-24-2298 TCGA-25-1312 TCGA-25-1313 
       16.64        33.11        55.86        53.26         1.02        26.93 
TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 TCGA-25-1319 
       31.99        51.06        37.02         1.02        34.98        65.00 
TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 
       36.95        33.96         2.99        12.00         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1628 TCGA-25-1630 TCGA-25-1631 
       18.02        15.78         0.36        20.58         7.86         0.30 
TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 TCGA-25-1871 
       56.94        60.59        35.54        51.22        14.93        24.99 
TCGA-25-1877 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 
       18.05        85.05        13.02        49.05         1.02        38.04 
TCGA-25-2396 TCGA-25-2397 TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 
        3.02        12.00        45.01        19.99        42.02         2.96 
TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 
       29.00        30.97        26.96        78.87        44.71        47.18 
TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 TCGA-29-1698 
      101.75        38.53         0.79        33.70        31.17        68.28 
TCGA-29-1699 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1705 TCGA-29-1707 
        0.53        16.90        18.64        59.67        18.25        41.95 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1761 TCGA-29-1762 TCGA-29-1763 TCGA-29-1764 
       29.23        34.62        17.00        85.68        66.77        62.93 
TCGA-29-1766 TCGA-29-1768 TCGA-29-1769 TCGA-29-1770 TCGA-29-1771 TCGA-29-1774 
       39.09        31.23        22.98        24.36        22.52        17.29 
TCGA-29-1775 TCGA-29-1776 TCGA-29-1777 TCGA-29-1778 TCGA-29-1783 TCGA-29-1784 
       12.36        11.84        12.30        14.93         7.20         5.36 
TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 TCGA-29-2427 TCGA-29-2428 TCGA-29-2429 
       34.62        86.17        65.00        62.47        45.11         4.87 
TCGA-29-2431 TCGA-29-2432 TCGA-29-2434 TCGA-29-2436 TCGA-30-1714 TCGA-30-1718 
       42.25        11.84        11.47         9.76        38.07        51.91 
TCGA-30-1856 TCGA-30-1857 TCGA-30-1859 TCGA-30-1860 TCGA-30-1861 TCGA-30-1862 
       15.68         0.26        48.07        44.91        34.78         6.08 
TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-30-1891 TCGA-30-1892 
       36.62         1.18        57.57        24.26        30.05        48.79 
TCGA-31-1944 TCGA-31-1946 TCGA-31-1950 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       45.57        30.18        18.77        22.45         6.71        42.51 
TCGA-31-1956 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 TCGA-36-1571 
       44.09         2.17        28.73        29.06        21.53        22.85 
TCGA-36-1574 TCGA-36-1575 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.55         8.55        30.05        25.74        27.85        24.23 
TCGA-36-1581 TCGA-36-2529 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2537 
       24.69        35.05        33.01        29.49        29.79        25.91 
TCGA-36-2538 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2545 
       25.08        23.80        21.60         2.24        20.98        18.31 
TCGA-36-2547 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 
       20.52        14.17        16.14        11.47        14.30         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.56         7.46         7.63        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
        1.74        22.32        28.96        25.05        25.02       180.16 
TCGA-59-2349 TCGA-59-2350 TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 
       80.12        22.32       116.12         9.40        34.39         2.14 
TCGA-59-2363 TCGA-59-2372 TCGA-61-1721 TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 
        5.39        44.78        11.11         8.05        20.94        31.40 
TCGA-61-1727 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1737 
       18.54        27.88         4.34        31.76        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1899 
       35.80         2.43        33.67        43.69         1.41         8.42 
TCGA-61-1900 TCGA-61-1901 TCGA-61-1903 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 
        5.79        11.41        13.02         9.07        34.13        31.30 
TCGA-61-1910 TCGA-61-1911 TCGA-61-1913 TCGA-61-1914 TCGA-61-1915 TCGA-61-1917 
       37.02        42.48        48.92        56.58        67.73        43.43 
TCGA-61-1918 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 TCGA-61-2003 
       15.75        38.17         1.97         5.52        14.50         3.98 
TCGA-61-2008 TCGA-61-2009 TCGA-61-2012 TCGA-61-2016 TCGA-61-2017 TCGA-61-2018 
       30.61        39.85        30.64         1.18        45.96        45.40 
TCGA-61-2087 TCGA-61-2092 TCGA-61-2094 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 
        4.80        51.72        71.74        61.64        58.39        60.62 
TCGA-61-2098 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 
       65.49        55.50         6.48        76.83        20.68        44.52 
TCGA-61-2111 TCGA-61-2113 TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 
      125.72        22.22        51.91        15.88         6.35        31.07 
TCGA-61-2614 
        8.58 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              1.18               0.26 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            129.96             180.16 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             28.47              28.34 
[1] "1.2 - 130.0 (28.5)" "0.3 - 180.2 (28.3)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D76V2, continuous
D76V3, multiclass
                    clus
vv                   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                            23                525
  PERITONEUM (OVARY)                0                  2
D76V4, continuous
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 74 
        TCGA-04-1346         TCGA-04-1347         TCGA-04-1351 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-04-1356         TCGA-04-1367         TCGA-10-0925 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-10-0926         TCGA-13-0714         TCGA-13-0720 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0724         TCGA-13-0755         TCGA-13-0757 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0758         TCGA-13-0760         TCGA-13-0762 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0764         TCGA-13-0768         TCGA-13-0791 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0801         TCGA-13-0802         TCGA-13-0885 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0887         TCGA-13-0888         TCGA-13-0889 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0897         TCGA-13-0900 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0901         TCGA-13-0903         TCGA-13-0904 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0905         TCGA-13-0906         TCGA-13-0910 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-0919         TCGA-13-1404         TCGA-13-1405 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1409         TCGA-13-1410         TCGA-13-1412 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1482         TCGA-13-1483         TCGA-13-1484 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1485         TCGA-13-1488         TCGA-13-1491 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1492         TCGA-13-1495         TCGA-13-1497 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1506 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1507         TCGA-13-1509         TCGA-13-1511 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-1512         TCGA-13-2057         TCGA-13-2060 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2071         TCGA-24-1614 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-24-1930         TCGA-61-2101 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
D76V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0   23
  20Q LOSS WILD-TYPE    3  526
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 0                  3
  YES               23                526
D76V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED     17    6
  20Q LOSS WILD-TYPE  431   98
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                17                431
  YES                6                 98

Clustering(77) Variable = 21q loss mutation analysis
D77V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    71  86
  21Q LOSS WILD-TYPE 190 199
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               157                389 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                86                199 
$`21Q LOSS MUTATED`
TCGA-04-1335 TCGA-04-1350 TCGA-04-1351 TCGA-04-1356 TCGA-04-1365 TCGA-04-1638 
        1.81        63.98        65.46        49.28        76.54        55.40 
TCGA-04-1644 TCGA-04-1648 TCGA-04-1654 TCGA-09-0369 TCGA-09-1659 TCGA-09-1661 
       48.89        28.64        47.70        35.54         9.96        38.43 
TCGA-09-1662 TCGA-09-1669 TCGA-09-1675 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 
       89.33        30.48        97.55       112.37        71.11        63.09 
TCGA-09-2056 TCGA-10-0926 TCGA-10-0927 TCGA-10-0930 TCGA-10-0937 TCGA-13-0723 
       12.46        25.91        81.47        33.24        15.12        39.58 
TCGA-13-0730 TCGA-13-0751 TCGA-13-0758 TCGA-13-0761 TCGA-13-0792 TCGA-13-0794 
       17.79        55.17        11.38        34.06        36.72        30.35 
TCGA-13-0803 TCGA-13-0883 TCGA-13-0887 TCGA-13-0891 TCGA-13-0899 TCGA-13-0906 
       43.82        68.91        66.64        69.01        56.15        44.94 
TCGA-13-0911 TCGA-13-0912 TCGA-13-0913 TCGA-13-0916 TCGA-13-0920 TCGA-13-0921 
       27.68        34.06        29.98        21.14        13.81         4.64 
TCGA-13-1404 TCGA-13-1409 TCGA-13-1487 TCGA-13-1488 TCGA-13-1494 TCGA-13-1495 
        6.61         6.84        22.39        70.82        38.17        49.22 
TCGA-13-1497 TCGA-13-1507 TCGA-13-1512 TCGA-13-2061 TCGA-20-1682 TCGA-20-1684 
       54.31         4.77         3.09        10.78        27.48        19.07 
TCGA-20-1686 TCGA-20-1687 TCGA-23-1022 TCGA-23-1030 TCGA-23-1031 TCGA-23-1109 
        2.93         2.66        42.51        29.10        18.87        51.35 
TCGA-23-1113 TCGA-23-1114 TCGA-23-1118 TCGA-23-1124 TCGA-23-2072 TCGA-23-2077 
       31.20        68.68        86.01        58.13        24.95       115.89 
TCGA-24-0968 TCGA-24-0975 TCGA-24-1103 TCGA-24-1413 TCGA-24-1418 TCGA-24-1425 
       19.63        21.80        54.08         6.31         7.99         5.95 
TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1471 TCGA-24-1548 TCGA-24-1557 
       28.34        19.17        18.67         1.18        16.21        39.88 
TCGA-24-1567 TCGA-24-1604 TCGA-24-1614 TCGA-24-1846 TCGA-24-1920 TCGA-24-1924 
       17.23        88.34        48.33         4.37         9.80        30.21 
TCGA-24-1930 TCGA-24-2020 TCGA-24-2023 TCGA-24-2026 TCGA-24-2030 TCGA-24-2267 
       81.11       151.99        44.84        34.82        53.95        47.54 
TCGA-24-2290 TCGA-24-2298 TCGA-25-1316 TCGA-25-1318 TCGA-25-1320 TCGA-25-1321 
       36.23        53.26        37.02        34.98        36.95        33.96 
TCGA-25-1625 TCGA-25-1630 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 
       18.02         7.86        56.94        60.59        35.54        51.22 
TCGA-25-1871 TCGA-25-2396 TCGA-29-1691 TCGA-29-1695 TCGA-29-1699 TCGA-29-1702 
       24.99         3.02        47.18         0.79         0.53        18.64 
TCGA-29-1705 TCGA-29-1711 TCGA-29-1761 TCGA-29-1763 TCGA-29-1769 TCGA-29-1770 
       18.25        34.62        17.00        66.77        22.98        24.36 
TCGA-29-1774 TCGA-29-1775 TCGA-29-1784 TCGA-29-1785 TCGA-29-2414 TCGA-29-2425 
       17.29        12.36         5.36        34.62        86.17        65.00 
TCGA-29-2427 TCGA-29-2434 TCGA-30-1714 TCGA-30-1718 TCGA-30-1853 TCGA-30-1855 
       62.47        11.47        38.07        51.91        36.26         2.47 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1866 TCGA-30-1891 TCGA-30-1892 TCGA-31-1950 
       48.07        44.91        36.62        30.05        48.79        18.77 
TCGA-31-1956 TCGA-36-1575 TCGA-36-1581 TCGA-36-2530 TCGA-36-2534 TCGA-36-2538 
       44.09         8.55        24.69        33.01        29.79        25.08 
TCGA-36-2544 TCGA-36-2548 TCGA-57-1993 TCGA-57-1994 TCGA-59-2372 TCGA-61-1727 
       20.98        14.17        25.05        25.02        44.78        18.54 
TCGA-61-1730 TCGA-61-1733 TCGA-61-1734 TCGA-61-1899 TCGA-61-1903 TCGA-61-1913 
        4.34        31.76        28.47         8.42        13.02        48.92 
TCGA-61-1917 TCGA-61-1918 TCGA-61-1919 TCGA-61-2000 TCGA-61-2008 TCGA-61-2016 
       43.43        15.75        38.17        14.50        30.61         1.18 
TCGA-61-2094 
       71.74 

$`21Q LOSS WILD-TYPE`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00        49.15         2.01        46.62        18.51 
TCGA-04-1343 TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1361 
       11.87        65.49        63.06        48.76        21.57        32.52 
TCGA-04-1362 TCGA-04-1364 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 TCGA-04-1516 
       44.32        33.67        71.47        82.36        56.55        41.59 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1530 TCGA-04-1536 TCGA-04-1542 TCGA-04-1646 
       19.99        38.37       119.08        29.06        84.20        27.88 
TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 TCGA-09-0364 TCGA-09-0365 
       64.64        36.23        31.86        45.34        29.16         9.47 
TCGA-09-0366 TCGA-09-0367 TCGA-09-1664 TCGA-09-1665 TCGA-09-1666 TCGA-09-1667 
       57.73        17.95        74.89        41.59        57.57        61.87 
TCGA-09-1668 TCGA-09-1670 TCGA-09-1672 TCGA-09-1673 TCGA-09-1674 TCGA-09-2043 
       55.36        17.98         5.85         3.02         8.55         6.15 
TCGA-09-2044 TCGA-09-2045 TCGA-09-2048 TCGA-09-2053 TCGA-09-2054 TCGA-09-2055 
        6.12        35.15         4.50        39.75        20.91        26.93 
TCGA-10-0925 TCGA-10-0928 TCGA-10-0931 TCGA-10-0933 TCGA-10-0934 TCGA-10-0935 
       54.31        18.48        32.28        11.70         3.88        35.41 
TCGA-10-0936 TCGA-10-0938 TCGA-13-0714 TCGA-13-0717 TCGA-13-0720 TCGA-13-0724 
       35.80        19.86         6.21        24.59        44.55         2.73 
TCGA-13-0725 TCGA-13-0726 TCGA-13-0727 TCGA-13-0755 TCGA-13-0757 TCGA-13-0760 
       12.39        31.07        15.19         2.47        11.18        11.54 
TCGA-13-0762 TCGA-13-0764 TCGA-13-0766 TCGA-13-0768 TCGA-13-0791 TCGA-13-0793 
       32.25        31.04        21.40         8.42        38.93        28.70 
TCGA-13-0795 TCGA-13-0797 TCGA-13-0799 TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 
       19.56         8.71         7.79         8.12         8.28         8.19 
TCGA-13-0804 TCGA-13-0805 TCGA-13-0807 TCGA-13-0884 TCGA-13-0885 TCGA-13-0886 
       35.28        35.28        13.61       107.18        91.40        74.27 
TCGA-13-0888 TCGA-13-0889 TCGA-13-0890 TCGA-13-0893 TCGA-13-0897 TCGA-13-0900 
       70.39        61.81        67.99        43.36        57.47        57.07 
TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 TCGA-13-0905 TCGA-13-0908 TCGA-13-0910 
       19.36        47.38        48.33        47.84        44.84        37.08 
TCGA-13-0919 TCGA-13-0923 TCGA-13-0924 TCGA-13-1403 TCGA-13-1405 TCGA-13-1407 
       14.89         6.41         6.08        10.88         7.36         6.05 
TCGA-13-1408 TCGA-13-1410 TCGA-13-1411 TCGA-13-1412 TCGA-13-1477 TCGA-13-1481 
        5.92         4.70         4.21         5.33        54.61        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1484 TCGA-13-1485 TCGA-13-1489 TCGA-13-1491 
       61.71        29.39        98.04        20.68        82.88        52.44 
TCGA-13-1492 TCGA-13-1496 TCGA-13-1498 TCGA-13-1499 TCGA-13-1500 TCGA-13-1501 
       73.55         4.24        37.61        38.37        13.97        32.84 
TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1509 TCGA-13-1510 TCGA-13-1511 
       16.57         4.21         4.41         4.14         2.56         3.88 
TCGA-13-2057 TCGA-13-2059 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0987 
       14.24        12.23         8.58         8.75         6.28        23.05 
TCGA-20-0990 TCGA-20-0991 TCGA-20-0996 TCGA-20-1683 TCGA-20-1685 TCGA-23-1021 
       25.94        26.20        72.20        25.38        16.67        47.54 
TCGA-23-1023 TCGA-23-1024 TCGA-23-1026 TCGA-23-1027 TCGA-23-1028 TCGA-23-1029 
       40.54        15.39        26.83        31.73        49.41         8.81 
TCGA-23-1032 TCGA-23-1110 TCGA-23-1111 TCGA-23-1116 TCGA-23-1117 TCGA-23-1119 
        2.24        54.51         3.22         4.57        33.30       129.96 
TCGA-23-1120 TCGA-23-1121 TCGA-23-1122 TCGA-23-1123 TCGA-23-1809 TCGA-23-2078 
        4.27         6.38        39.09        33.47         0.53        87.48 
TCGA-23-2079 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 TCGA-23-2645 
       91.66        77.00        49.84         2.76         4.70         4.50 
TCGA-24-0966 TCGA-24-0970 TCGA-24-0979 TCGA-24-0980 TCGA-24-0982 TCGA-24-1104 
        7.63        11.64        41.56         7.66        22.32        63.55 
TCGA-24-1105 TCGA-24-1416 TCGA-24-1417 TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 
       47.41         6.38         7.82         7.86         0.76         6.25 
TCGA-24-1424 TCGA-24-1426 TCGA-24-1427 TCGA-24-1428 TCGA-24-1435 TCGA-24-1436 
        6.02         5.36         4.80        17.36        43.53         8.55 
TCGA-24-1463 TCGA-24-1464 TCGA-24-1466 TCGA-24-1467 TCGA-24-1469 TCGA-24-1470 
       72.92        12.46        45.14       105.99         9.11         3.42 
TCGA-24-1474 TCGA-24-1544 TCGA-24-1545 TCGA-24-1546 TCGA-24-1549 TCGA-24-1550 
       22.19        26.96        57.37        64.27        56.58        41.06 
TCGA-24-1551 TCGA-24-1552 TCGA-24-1553 TCGA-24-1555 TCGA-24-1556 TCGA-24-1558 
       51.91        41.39        58.09        88.50        70.62        19.53 
TCGA-24-1560 TCGA-24-1562 TCGA-24-1563 TCGA-24-1564 TCGA-24-1565 TCGA-24-1603 
       44.09        45.50        47.70        25.87        10.26        90.15 
TCGA-24-1616 TCGA-24-1842 TCGA-24-1843 TCGA-24-1844 TCGA-24-1845 TCGA-24-1847 
       38.24         8.32         3.48         3.72         3.81        11.28 
TCGA-24-1849 TCGA-24-1850 TCGA-24-1923 TCGA-24-1927 TCGA-24-1928 TCGA-24-2019 
        5.75         5.49        22.65        16.41        11.05         4.87 
TCGA-24-2024 TCGA-24-2027 TCGA-24-2029 TCGA-24-2033 TCGA-24-2035 TCGA-24-2036 
       58.16       109.68        14.43        18.48        28.18        64.01 
TCGA-24-2038 TCGA-24-2254 TCGA-24-2260 TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 
       44.48        57.07        36.16         0.79         0.36        31.63 
TCGA-24-2280 TCGA-24-2281 TCGA-24-2288 TCGA-24-2289 TCGA-24-2293 TCGA-24-2295 
       70.45        44.58         0.82        67.36        16.64        33.11 
TCGA-24-2297 TCGA-25-1312 TCGA-25-1313 TCGA-25-1314 TCGA-25-1315 TCGA-25-1317 
       55.86         1.02        26.93        31.99        51.06         1.02 
TCGA-25-1319 TCGA-25-1322 TCGA-25-1323 TCGA-25-1329 TCGA-25-1623 TCGA-25-1626 
       65.00         2.99        12.00         2.96        18.58        15.78 
TCGA-25-1627 TCGA-25-1628 TCGA-25-1631 TCGA-25-1870 TCGA-25-1877 TCGA-25-1878 
        0.36        20.58         0.30        14.93        18.05        85.05 
TCGA-25-2042 TCGA-25-2391 TCGA-25-2392 TCGA-25-2393 TCGA-25-2397 TCGA-25-2398 
       13.02        49.05         1.02        38.04        12.00        45.01 
TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 TCGA-25-2409 
       19.99        42.02         2.96        29.00        30.97        26.96 
TCGA-29-1688 TCGA-29-1690 TCGA-29-1693 TCGA-29-1694 TCGA-29-1696 TCGA-29-1697 
       78.87        44.71       101.75        38.53        33.70        31.17 
TCGA-29-1698 TCGA-29-1701 TCGA-29-1703 TCGA-29-1707 TCGA-29-1710 TCGA-29-1762 
       68.28        16.90        59.67        41.95        29.23        85.68 
TCGA-29-1764 TCGA-29-1766 TCGA-29-1768 TCGA-29-1771 TCGA-29-1776 TCGA-29-1777 
       62.93        39.09        31.23        22.52        11.84        12.30 
TCGA-29-1778 TCGA-29-1781 TCGA-29-1783 TCGA-29-2428 TCGA-29-2429 TCGA-29-2431 
       14.93         8.35         7.20        45.11         4.87        42.25 
TCGA-29-2432 TCGA-29-2436 TCGA-30-1856 TCGA-30-1857 TCGA-30-1861 TCGA-30-1862 
       11.84         9.76        15.68         0.26        34.78         6.08 
TCGA-30-1867 TCGA-30-1880 TCGA-30-1887 TCGA-31-1944 TCGA-31-1946 TCGA-31-1951 
        1.18        57.57        24.26        45.57        30.18        22.45 
TCGA-31-1953 TCGA-31-1955 TCGA-31-1959 TCGA-36-1568 TCGA-36-1569 TCGA-36-1570 
        6.71        42.51         2.17        28.73        29.06        21.53 
TCGA-36-1571 TCGA-36-1574 TCGA-36-1576 TCGA-36-1577 TCGA-36-1578 TCGA-36-1580 
       22.85        22.55        30.05        25.74        27.85        24.23 
TCGA-36-2529 TCGA-36-2532 TCGA-36-2537 TCGA-36-2540 TCGA-36-2542 TCGA-36-2543 
       35.05        29.49        25.91        23.80        21.60         2.24 
TCGA-36-2545 TCGA-36-2547 TCGA-36-2551 TCGA-36-2552 TCGA-42-2582 TCGA-42-2588 
       18.31        20.52        16.14        11.47        14.30         9.44 
TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 TCGA-57-1583 TCGA-57-1584 
        7.56         7.46         7.63        24.03        11.38        21.14 
TCGA-57-1585 TCGA-57-1586 TCGA-57-1992 TCGA-59-2348 TCGA-59-2349 TCGA-59-2350 
        1.74        22.32        28.96       180.16        80.12        22.32 
TCGA-59-2351 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-61-1721 
      116.12         9.40        34.39         2.14         5.39        11.11 
TCGA-61-1722 TCGA-61-1724 TCGA-61-1725 TCGA-61-1728 TCGA-61-1736 TCGA-61-1737 
        8.05        20.94        31.40        27.88        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1895 TCGA-61-1900 
       35.80         2.43        33.67        43.69         1.41         5.79 
TCGA-61-1901 TCGA-61-1904 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1911 
       11.41         9.07        34.13        31.30        37.02        42.48 
TCGA-61-1914 TCGA-61-1915 TCGA-61-1995 TCGA-61-1998 TCGA-61-2002 TCGA-61-2003 
       56.58        67.73         1.97         5.52        17.98         3.98 
TCGA-61-2009 TCGA-61-2012 TCGA-61-2017 TCGA-61-2018 TCGA-61-2087 TCGA-61-2088 
       39.85        30.64        45.96        45.40         4.80         4.77 
TCGA-61-2092 TCGA-61-2095 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2101 
       51.72        61.64        58.39        60.62        65.49        55.50 
TCGA-61-2102 TCGA-61-2104 TCGA-61-2109 TCGA-61-2110 TCGA-61-2111 TCGA-61-2113 
        6.48        76.83        20.68        44.52       125.72        22.22 
TCGA-61-2610 TCGA-61-2611 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       51.91        15.88         6.35        31.07         8.58 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.53               0.26 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            151.99             180.16 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             31.76              25.91 
[1] "0.5 - 152.0 (31.8)" "0.3 - 180.2 (25.9)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-0761         TCGA-13-0762         TCGA-13-0764 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0766         TCGA-13-0768         TCGA-13-0791 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0792         TCGA-13-0793         TCGA-13-0794 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-0795         TCGA-13-0797         TCGA-13-0799 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0800         TCGA-13-0801         TCGA-13-0802 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0803         TCGA-13-0804         TCGA-13-0805 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0807         TCGA-13-0883         TCGA-13-0884 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-0885         TCGA-13-0886         TCGA-13-0887 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-0888         TCGA-13-0889         TCGA-13-0890 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0891         TCGA-13-0893         TCGA-13-0897 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
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        TCGA-13-0899         TCGA-13-0900         TCGA-13-0901 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0903         TCGA-13-0904         TCGA-13-0905 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0906         TCGA-13-0908         TCGA-13-0910 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-0911         TCGA-13-0912         TCGA-13-0913 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-13-0916         TCGA-13-0919         TCGA-13-0920 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-0921         TCGA-13-0923         TCGA-13-0924 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1403         TCGA-13-1404         TCGA-13-1405 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-1407         TCGA-13-1408         TCGA-13-1409 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-1410         TCGA-13-1411         TCGA-13-1412 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1477         TCGA-13-1481         TCGA-13-1482 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1483         TCGA-13-1484         TCGA-13-1485 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1487         TCGA-13-1488         TCGA-13-1489 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-1491         TCGA-13-1492         TCGA-13-1494 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-1495         TCGA-13-1496         TCGA-13-1497 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-1498         TCGA-13-1499         TCGA-13-1500 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1501         TCGA-13-1504         TCGA-13-1505 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-1506         TCGA-13-1507         TCGA-13-1509 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-13-1510         TCGA-13-1511         TCGA-13-1512 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-13-2057         TCGA-13-2059         TCGA-13-2060 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-13-2061         TCGA-13-2065         TCGA-13-2071 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-20-0987         TCGA-20-0990         TCGA-20-0991 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-20-0996         TCGA-20-1682         TCGA-20-1683 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-20-1684         TCGA-20-1685         TCGA-20-1686 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-20-1687         TCGA-23-1021         TCGA-23-1022 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-23-1023         TCGA-23-1024         TCGA-23-1026 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1027         TCGA-23-1028         TCGA-23-1029 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1030         TCGA-23-1031         TCGA-23-1032 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-1109         TCGA-23-1110         TCGA-23-1111 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1113         TCGA-23-1114         TCGA-23-1116 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-1117         TCGA-23-1118         TCGA-23-1119 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-1120         TCGA-23-1121         TCGA-23-1122 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-1123         TCGA-23-1124         TCGA-23-1809 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-2072         TCGA-23-2077         TCGA-23-2078 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-23-2079         TCGA-23-2081         TCGA-23-2084 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-23-2641         TCGA-23-2643         TCGA-23-2645 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-0966         TCGA-24-0968         TCGA-24-0970 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-0975         TCGA-24-0979         TCGA-24-0980 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-0982         TCGA-24-1103         TCGA-24-1104 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1105         TCGA-24-1413         TCGA-24-1416 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1417         TCGA-24-1418         TCGA-24-1419 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1422         TCGA-24-1423         TCGA-24-1424 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1425         TCGA-24-1426         TCGA-24-1427 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1428         TCGA-24-1430         TCGA-24-1431 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-24-1434         TCGA-24-1435         TCGA-24-1436 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1463         TCGA-24-1464         TCGA-24-1466 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1467         TCGA-24-1469         TCGA-24-1470 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1471         TCGA-24-1474         TCGA-24-1544 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1545         TCGA-24-1546         TCGA-24-1548 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1549         TCGA-24-1550         TCGA-24-1551 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1552         TCGA-24-1553         TCGA-24-1555 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1556         TCGA-24-1557         TCGA-24-1558 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-1560         TCGA-24-1562         TCGA-24-1563 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1564         TCGA-24-1565         TCGA-24-1567 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1603         TCGA-24-1604         TCGA-24-1614 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-24-1616         TCGA-24-1842         TCGA-24-1843 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1844         TCGA-24-1845         TCGA-24-1846 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1847         TCGA-24-1849         TCGA-24-1850 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-1920         TCGA-24-1923         TCGA-24-1924 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-1927         TCGA-24-1928         TCGA-24-1930 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-24-2019         TCGA-24-2020         TCGA-24-2023 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-24-2024         TCGA-24-2026         TCGA-24-2027 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-2029         TCGA-24-2030         TCGA-24-2033 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-2035         TCGA-24-2036         TCGA-24-2038 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2254         TCGA-24-2260         TCGA-24-2261 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2262         TCGA-24-2267         TCGA-24-2271 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-2280         TCGA-24-2281         TCGA-24-2288 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-24-2289         TCGA-24-2290         TCGA-24-2293 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-24-2295         TCGA-24-2297         TCGA-24-2298 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-1312         TCGA-25-1313         TCGA-25-1314 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-1315         TCGA-25-1316         TCGA-25-1317 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D77V2, continuous
D77V3, multiclass
                    clus
vv                   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  OMENTUM                           1                  1
  OVARY                           158                390
  PERITONEUM (OVARY)                0                  2
D77V4, continuous
D77V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      1  158
  21Q LOSS WILD-TYPE    2  391
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 1                  2
  YES              158                391
D77V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED    127   32
  21Q LOSS WILD-TYPE  321   72
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO               127                321
  YES               32                 72

Clustering(78) Variable = 22q loss mutation analysis
D78V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED   182 206
  22Q LOSS WILD-TYPE  79  79
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               388                158 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               206                 79 
$`22Q LOSS MUTATED`
TCGA-04-1331 TCGA-04-1332 TCGA-04-1336 TCGA-04-1337 TCGA-04-1338 TCGA-04-1342 
       40.24        41.00        49.15         2.01        46.62        18.51 
TCGA-04-1346 TCGA-04-1347 TCGA-04-1348 TCGA-04-1349 TCGA-04-1350 TCGA-04-1351 
       65.49        63.06        48.76        21.57        63.98        65.46 
TCGA-04-1361 TCGA-04-1362 TCGA-04-1365 TCGA-04-1367 TCGA-04-1371 TCGA-04-1514 
       32.52        44.32        76.54        71.47        82.36        56.55 
TCGA-04-1517 TCGA-04-1525 TCGA-04-1536 TCGA-04-1542 TCGA-04-1638 TCGA-04-1644 
       19.99        38.37        29.06        84.20        55.40        48.89 
TCGA-04-1646 TCGA-04-1648 TCGA-04-1649 TCGA-04-1651 TCGA-04-1652 TCGA-04-1655 
       27.88        28.64        64.64        36.23        31.86        45.34 
TCGA-09-0364 TCGA-09-0365 TCGA-09-0366 TCGA-09-0367 TCGA-09-0369 TCGA-09-1661 
       29.16         9.47        57.73        17.95        35.54        38.43 
TCGA-09-1662 TCGA-09-1664 TCGA-09-1666 TCGA-09-1667 TCGA-09-1668 TCGA-09-1669 
       89.33        74.89        57.57        61.87        55.36        30.48 
TCGA-09-1670 TCGA-09-1673 TCGA-09-1674 TCGA-09-1675 TCGA-09-2044 TCGA-09-2045 
       17.98         3.02         8.55        97.55         6.12        35.15 
TCGA-09-2048 TCGA-09-2049 TCGA-09-2050 TCGA-09-2051 TCGA-09-2053 TCGA-09-2054 
        4.50       112.37        71.11        63.09        39.75        20.91 
TCGA-09-2056 TCGA-10-0925 TCGA-10-0926 TCGA-10-0927 TCGA-10-0928 TCGA-10-0931 
       12.46        54.31        25.91        81.47        18.48        32.28 
TCGA-10-0933 TCGA-10-0937 TCGA-10-0938 TCGA-13-0717 TCGA-13-0720 TCGA-13-0723 
       11.70        15.12        19.86        24.59        44.55        39.58 
TCGA-13-0725 TCGA-13-0727 TCGA-13-0730 TCGA-13-0751 TCGA-13-0757 TCGA-13-0761 
       12.39        15.19        17.79        55.17        11.18        34.06 
TCGA-13-0764 TCGA-13-0766 TCGA-13-0791 TCGA-13-0794 TCGA-13-0797 TCGA-13-0799 
       31.04        21.40        38.93        30.35         8.71         7.79 
TCGA-13-0800 TCGA-13-0801 TCGA-13-0802 TCGA-13-0803 TCGA-13-0804 TCGA-13-0805 
        8.12         8.28         8.19        43.82        35.28        35.28 
TCGA-13-0807 TCGA-13-0883 TCGA-13-0885 TCGA-13-0886 TCGA-13-0887 TCGA-13-0890 
       13.61        68.91        91.40        74.27        66.64        67.99 
TCGA-13-0891 TCGA-13-0897 TCGA-13-0900 TCGA-13-0901 TCGA-13-0903 TCGA-13-0904 
       69.01        57.47        57.07        19.36        47.38        48.33 
TCGA-13-0905 TCGA-13-0906 TCGA-13-0908 TCGA-13-0910 TCGA-13-0911 TCGA-13-0912 
       47.84        44.94        44.84        37.08        27.68        34.06 
TCGA-13-0913 TCGA-13-0916 TCGA-13-0919 TCGA-13-0921 TCGA-13-0923 TCGA-13-0924 
       29.98        21.14        14.89         4.64         6.41         6.08 
TCGA-13-1404 TCGA-13-1407 TCGA-13-1409 TCGA-13-1411 TCGA-13-1412 TCGA-13-1481 
        6.61         6.05         6.84         4.21         5.33        87.06 
TCGA-13-1482 TCGA-13-1483 TCGA-13-1487 TCGA-13-1489 TCGA-13-1491 TCGA-13-1492 
       61.71        29.39        22.39        82.88        52.44        73.55 
TCGA-13-1494 TCGA-13-1495 TCGA-13-1496 TCGA-13-1497 TCGA-13-1498 TCGA-13-1500 
       38.17        49.22         4.24        54.31        37.61        13.97 
TCGA-13-1501 TCGA-13-1504 TCGA-13-1505 TCGA-13-1506 TCGA-13-1507 TCGA-13-1509 
       32.84        16.57         4.21         4.41         4.77         4.14 
TCGA-13-1512 TCGA-13-2057 TCGA-13-2060 TCGA-13-2065 TCGA-13-2071 TCGA-20-0990 
        3.09        14.24         8.58         8.75         6.28        25.94 
TCGA-20-0991 TCGA-20-1682 TCGA-20-1683 TCGA-20-1684 TCGA-20-1685 TCGA-20-1687 
       26.20        27.48        25.38        19.07        16.67         2.66 
TCGA-23-1021 TCGA-23-1022 TCGA-23-1024 TCGA-23-1027 TCGA-23-1029 TCGA-23-1030 
       47.54        42.51        15.39        31.73         8.81        29.10 
TCGA-23-1031 TCGA-23-1032 TCGA-23-1109 TCGA-23-1110 TCGA-23-1111 TCGA-23-1113 
       18.87         2.24        51.35        54.51         3.22        31.20 
TCGA-23-1114 TCGA-23-1117 TCGA-23-1118 TCGA-23-1119 TCGA-23-1122 TCGA-23-1123 
       68.68        33.30        86.01       129.96        39.09        33.47 
TCGA-23-2072 TCGA-23-2078 TCGA-23-2081 TCGA-23-2084 TCGA-23-2641 TCGA-23-2643 
       24.95        87.48        77.00        49.84         2.76         4.70 
TCGA-23-2645 TCGA-24-0966 TCGA-24-0970 TCGA-24-0975 TCGA-24-0979 TCGA-24-0982 
        4.50         7.63        11.64        21.80        41.56        22.32 
TCGA-24-1104 TCGA-24-1105 TCGA-24-1413 TCGA-24-1416 TCGA-24-1417 TCGA-24-1418 
       63.55        47.41         6.31         6.38         7.82         7.99 
TCGA-24-1419 TCGA-24-1422 TCGA-24-1423 TCGA-24-1424 TCGA-24-1425 TCGA-24-1426 
        7.86         0.76         6.25         6.02         5.95         5.36 
TCGA-24-1427 TCGA-24-1430 TCGA-24-1431 TCGA-24-1434 TCGA-24-1435 TCGA-24-1464 
        4.80        28.34        19.17        18.67        43.53        12.46 
TCGA-24-1466 TCGA-24-1467 TCGA-24-1470 TCGA-24-1471 TCGA-24-1474 TCGA-24-1544 
       45.14       105.99         3.42         1.18        22.19        26.96 
TCGA-24-1545 TCGA-24-1546 TCGA-24-1548 TCGA-24-1549 TCGA-24-1550 TCGA-24-1552 
       57.37        64.27        16.21        56.58        41.06        41.39 
TCGA-24-1555 TCGA-24-1556 TCGA-24-1557 TCGA-24-1560 TCGA-24-1562 TCGA-24-1565 
       88.50        70.62        39.88        44.09        45.50        10.26 
TCGA-24-1567 TCGA-24-1603 TCGA-24-1604 TCGA-24-1614 TCGA-24-1616 TCGA-24-1843 
       17.23        90.15        88.34        48.33        38.24         3.48 
TCGA-24-1844 TCGA-24-1845 TCGA-24-1846 TCGA-24-1850 TCGA-24-1920 TCGA-24-1923 
        3.72         3.81         4.37         5.49         9.80        22.65 
TCGA-24-1924 TCGA-24-1930 TCGA-24-2019 TCGA-24-2023 TCGA-24-2026 TCGA-24-2027 
       30.21        81.11         4.87        44.84        34.82       109.68 
TCGA-24-2029 TCGA-24-2030 TCGA-24-2033 TCGA-24-2036 TCGA-24-2254 TCGA-24-2260 
       14.43        53.95        18.48        64.01        57.07        36.16 
TCGA-24-2261 TCGA-24-2262 TCGA-24-2271 TCGA-24-2288 TCGA-24-2295 TCGA-24-2298 
        0.79         0.36        31.63         0.82        33.11        53.26 
TCGA-25-1312 TCGA-25-1314 TCGA-25-1315 TCGA-25-1316 TCGA-25-1317 TCGA-25-1318 
        1.02        31.99        51.06        37.02         1.02        34.98 
TCGA-25-1319 TCGA-25-1320 TCGA-25-1321 TCGA-25-1322 TCGA-25-1323 TCGA-25-1628 
       65.00        36.95        33.96         2.99        12.00        20.58 
TCGA-25-1631 TCGA-25-1632 TCGA-25-1633 TCGA-25-1634 TCGA-25-1635 TCGA-25-1870 
        0.30        56.94        60.59        35.54        51.22        14.93 
TCGA-25-1871 TCGA-25-1878 TCGA-25-2042 TCGA-25-2391 TCGA-25-2393 TCGA-25-2397 
       24.99        85.05        13.02        49.05        38.04        12.00 
TCGA-25-2398 TCGA-25-2399 TCGA-25-2400 TCGA-25-2401 TCGA-25-2404 TCGA-25-2408 
       45.01        19.99        42.02         2.96        29.00        30.97 
TCGA-25-2409 TCGA-29-1693 TCGA-29-1694 TCGA-29-1695 TCGA-29-1696 TCGA-29-1697 
       26.96       101.75        38.53         0.79        33.70        31.17 
TCGA-29-1698 TCGA-29-1701 TCGA-29-1702 TCGA-29-1703 TCGA-29-1707 TCGA-29-1761 
       68.28        16.90        18.64        59.67        41.95        17.00 
TCGA-29-1762 TCGA-29-1763 TCGA-29-1766 TCGA-29-1769 TCGA-29-1774 TCGA-29-1775 
       85.68        66.77        39.09        22.98        17.29        12.36 
TCGA-29-1776 TCGA-29-1778 TCGA-29-1783 TCGA-29-1785 TCGA-29-2425 TCGA-29-2428 
       11.84        14.93         7.20        34.62        65.00        45.11 
TCGA-29-2431 TCGA-29-2436 TCGA-30-1714 TCGA-30-1853 TCGA-30-1855 TCGA-30-1856 
       42.25         9.76        38.07        36.26         2.47        15.68 
TCGA-30-1859 TCGA-30-1860 TCGA-30-1862 TCGA-30-1866 TCGA-30-1867 TCGA-30-1880 
       48.07        44.91         6.08        36.62         1.18        57.57 
TCGA-30-1887 TCGA-30-1892 TCGA-31-1944 TCGA-31-1951 TCGA-31-1953 TCGA-31-1955 
       24.26        48.79        45.57        22.45         6.71        42.51 
TCGA-31-1959 TCGA-36-1568 TCGA-36-1571 TCGA-36-1575 TCGA-36-1577 TCGA-36-1580 
        2.17        28.73        22.85         8.55        25.74        24.23 
TCGA-36-1581 TCGA-36-2530 TCGA-36-2532 TCGA-36-2534 TCGA-36-2538 TCGA-36-2540 
       24.69        33.01        29.49        29.79        25.08        23.80 
TCGA-36-2542 TCGA-36-2543 TCGA-36-2544 TCGA-36-2548 TCGA-36-2551 TCGA-36-2552 
       21.60         2.24        20.98        14.17        16.14        11.47 
TCGA-42-2582 TCGA-42-2588 TCGA-42-2589 TCGA-42-2590 TCGA-42-2591 TCGA-57-1582 
       14.30         9.44         7.56         7.46         7.63        24.03 
TCGA-57-1583 TCGA-57-1584 TCGA-57-1992 TCGA-57-1993 TCGA-57-1994 TCGA-59-2348 
       11.38        21.14        28.96        25.05        25.02       180.16 
TCGA-59-2350 TCGA-59-2352 TCGA-59-2354 TCGA-59-2355 TCGA-59-2363 TCGA-59-2372 
       22.32         9.40        34.39         2.14         5.39        44.78 
TCGA-61-1725 TCGA-61-1728 TCGA-61-1730 TCGA-61-1733 TCGA-61-1736 TCGA-61-1737 
       31.40        27.88         4.34        31.76        48.79        44.84 
TCGA-61-1738 TCGA-61-1740 TCGA-61-1741 TCGA-61-1743 TCGA-61-1899 TCGA-61-1900 
       35.80         2.43        33.67        43.69         8.42         5.79 
TCGA-61-1901 TCGA-61-1906 TCGA-61-1907 TCGA-61-1910 TCGA-61-1913 TCGA-61-1914 
       11.41        34.13        31.30        37.02        48.92        56.58 
TCGA-61-1915 TCGA-61-1917 TCGA-61-1919 TCGA-61-1995 TCGA-61-1998 TCGA-61-2000 
       67.73        43.43        38.17         1.97         5.52        14.50 
TCGA-61-2003 TCGA-61-2008 TCGA-61-2012 TCGA-61-2016 TCGA-61-2018 TCGA-61-2087 
        3.98        30.61        30.64         1.18        45.40         4.80 
TCGA-61-2088 TCGA-61-2096 TCGA-61-2097 TCGA-61-2098 TCGA-61-2109 TCGA-61-2110 
        4.77        58.39        60.62        65.49        20.68        44.52 
TCGA-61-2610 TCGA-61-2612 TCGA-61-2613 TCGA-61-2614 
       51.91         6.35        31.07         8.58 

$`22Q LOSS WILD-TYPE`
TCGA-04-1335 TCGA-04-1343 TCGA-04-1356 TCGA-04-1364 TCGA-04-1516 TCGA-04-1530 
        1.81        11.87        49.28        33.67        41.59       119.08 
TCGA-04-1654 TCGA-09-1659 TCGA-09-1665 TCGA-09-1672 TCGA-09-2043 TCGA-09-2055 
       47.70         9.96        41.59         5.85         6.15        26.93 
TCGA-10-0930 TCGA-10-0934 TCGA-10-0935 TCGA-10-0936 TCGA-13-0714 TCGA-13-0724 
       33.24         3.88        35.41        35.80         6.21         2.73 
TCGA-13-0726 TCGA-13-0755 TCGA-13-0758 TCGA-13-0760 TCGA-13-0762 TCGA-13-0768 
       31.07         2.47        11.38        11.54        32.25         8.42 
TCGA-13-0792 TCGA-13-0793 TCGA-13-0795 TCGA-13-0884 TCGA-13-0888 TCGA-13-0889 
       36.72        28.70        19.56       107.18        70.39        61.81 
TCGA-13-0893 TCGA-13-0899 TCGA-13-0920 TCGA-13-1403 TCGA-13-1405 TCGA-13-1408 
       43.36        56.15        13.81        10.88         7.36         5.92 
TCGA-13-1410 TCGA-13-1477 TCGA-13-1484 TCGA-13-1485 TCGA-13-1488 TCGA-13-1499 
        4.70        54.61        98.04        20.68        70.82        38.37 
TCGA-13-1510 TCGA-13-1511 TCGA-13-2059 TCGA-13-2061 TCGA-20-0987 TCGA-20-0996 
        2.56         3.88        12.23        10.78        23.05        72.20 
TCGA-20-1686 TCGA-23-1023 TCGA-23-1026 TCGA-23-1028 TCGA-23-1116 TCGA-23-1120 
        2.93        40.54        26.83        49.41         4.57         4.27 
TCGA-23-1121 TCGA-23-1124 TCGA-23-1809 TCGA-23-2077 TCGA-23-2079 TCGA-24-0968 
        6.38        58.13         0.53       115.89        91.66        19.63 
TCGA-24-0980 TCGA-24-1103 TCGA-24-1428 TCGA-24-1436 TCGA-24-1463 TCGA-24-1469 
        7.66        54.08        17.36         8.55        72.92         9.11 
TCGA-24-1551 TCGA-24-1553 TCGA-24-1558 TCGA-24-1563 TCGA-24-1564 TCGA-24-1842 
       51.91        58.09        19.53        47.70        25.87         8.32 
TCGA-24-1847 TCGA-24-1849 TCGA-24-1927 TCGA-24-1928 TCGA-24-2020 TCGA-24-2024 
       11.28         5.75        16.41        11.05       151.99        58.16 
TCGA-24-2035 TCGA-24-2038 TCGA-24-2267 TCGA-24-2280 TCGA-24-2281 TCGA-24-2289 
       28.18        44.48        47.54        70.45        44.58        67.36 
TCGA-24-2290 TCGA-24-2293 TCGA-24-2297 TCGA-25-1313 TCGA-25-1329 TCGA-25-1623 
       36.23        16.64        55.86        26.93         2.96        18.58 
TCGA-25-1625 TCGA-25-1626 TCGA-25-1627 TCGA-25-1630 TCGA-25-1877 TCGA-25-2392 
       18.02        15.78         0.36         7.86        18.05         1.02 
TCGA-25-2396 TCGA-29-1688 TCGA-29-1690 TCGA-29-1691 TCGA-29-1699 TCGA-29-1705 
        3.02        78.87        44.71        47.18         0.53        18.25 
TCGA-29-1710 TCGA-29-1711 TCGA-29-1764 TCGA-29-1768 TCGA-29-1770 TCGA-29-1771 
       29.23        34.62        62.93        31.23        24.36        22.52 
TCGA-29-1777 TCGA-29-1781 TCGA-29-1784 TCGA-29-2414 TCGA-29-2427 TCGA-29-2429 
       12.30         8.35         5.36        86.17        62.47         4.87 
TCGA-29-2432 TCGA-29-2434 TCGA-30-1718 TCGA-30-1857 TCGA-30-1861 TCGA-30-1891 
       11.84        11.47        51.91         0.26        34.78        30.05 
TCGA-31-1946 TCGA-31-1950 TCGA-31-1956 TCGA-36-1569 TCGA-36-1570 TCGA-36-1574 
       30.18        18.77        44.09        29.06        21.53        22.55 
TCGA-36-1576 TCGA-36-1578 TCGA-36-2529 TCGA-36-2537 TCGA-36-2545 TCGA-36-2547 
       30.05        27.85        35.05        25.91        18.31        20.52 
TCGA-57-1585 TCGA-57-1586 TCGA-59-2349 TCGA-59-2351 TCGA-61-1721 TCGA-61-1722 
        1.74        22.32        80.12       116.12        11.11         8.05 
TCGA-61-1724 TCGA-61-1727 TCGA-61-1734 TCGA-61-1895 TCGA-61-1903 TCGA-61-1904 
       20.94        18.54        28.47         1.41        13.02         9.07 
TCGA-61-1911 TCGA-61-1918 TCGA-61-2002 TCGA-61-2009 TCGA-61-2017 TCGA-61-2092 
       42.48        15.75        17.98        39.85        45.96        51.72 
TCGA-61-2094 TCGA-61-2095 TCGA-61-2101 TCGA-61-2102 TCGA-61-2104 TCGA-61-2111 
       71.74        61.64        55.50         6.48        76.83       125.72 
TCGA-61-2113 TCGA-61-2611 
       22.22        15.88 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.30               0.26 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            180.16             151.99 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            29.440             23.705 
[1] "0.3 - 180.2 (29.4)" "0.3 - 152.0 (23.7)"
        TCGA-04-1331         TCGA-04-1332         TCGA-04-1335 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-04-1336         TCGA-04-1337         TCGA-04-1338 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-04-1342         TCGA-04-1343         TCGA-04-1346 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-04-1347         TCGA-04-1348         TCGA-04-1349 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-04-1350         TCGA-04-1351         TCGA-04-1356 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-04-1361         TCGA-04-1362         TCGA-04-1364 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-04-1365         TCGA-04-1367         TCGA-04-1371 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-04-1514         TCGA-04-1516         TCGA-04-1517 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-04-1525         TCGA-04-1530         TCGA-04-1536 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-04-1542         TCGA-04-1638         TCGA-04-1644 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-04-1646         TCGA-04-1648         TCGA-04-1649 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-04-1651         TCGA-04-1652         TCGA-04-1654 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-04-1655         TCGA-09-0364         TCGA-09-0365 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-09-0366         TCGA-09-0367         TCGA-09-0369 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-09-1659         TCGA-09-1661         TCGA-09-1662 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-09-1664         TCGA-09-1665         TCGA-09-1666 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-09-1667         TCGA-09-1668         TCGA-09-1669 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-09-1670         TCGA-09-1672         TCGA-09-1673 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-09-1674         TCGA-09-1675         TCGA-09-2043 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-09-2044         TCGA-09-2045         TCGA-09-2048 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-09-2049         TCGA-09-2050         TCGA-09-2051 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-09-2053         TCGA-09-2054         TCGA-09-2055 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-09-2056         TCGA-10-0925         TCGA-10-0926 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-10-0927         TCGA-10-0928         TCGA-10-0930 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-10-0931         TCGA-10-0933         TCGA-10-0934 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-10-0935         TCGA-10-0936         TCGA-10-0937 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-10-0938         TCGA-13-0714         TCGA-13-0717 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-13-0720         TCGA-13-0723         TCGA-13-0724 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-13-0725         TCGA-13-0726         TCGA-13-0727 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-13-0730         TCGA-13-0751         TCGA-13-0755 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-13-0757         TCGA-13-0758         TCGA-13-0760 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
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  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-25-1318         TCGA-25-1319         TCGA-25-1320 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-25-1321         TCGA-25-1322         TCGA-25-1323 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-25-1329         TCGA-25-1623         TCGA-25-1625 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-25-1626         TCGA-25-1627         TCGA-25-1628 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-25-1630         TCGA-25-1631         TCGA-25-1632 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-25-1633         TCGA-25-1634         TCGA-25-1635 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-25-1870         TCGA-25-1871         TCGA-25-1877 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-25-1878         TCGA-25-2042         TCGA-25-2391 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-25-2392         TCGA-25-2393         TCGA-25-2396 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-25-2397         TCGA-25-2398         TCGA-25-2399 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-25-2400         TCGA-25-2401         TCGA-25-2404 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-25-2408         TCGA-25-2409         TCGA-29-1688 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-29-1690         TCGA-29-1691         TCGA-29-1693 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-29-1694         TCGA-29-1695         TCGA-29-1696 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-29-1697         TCGA-29-1698         TCGA-29-1699 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-29-1701         TCGA-29-1702         TCGA-29-1703 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-29-1705         TCGA-29-1707         TCGA-29-1710 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-29-1711         TCGA-29-1761         TCGA-29-1762 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-29-1763         TCGA-29-1764         TCGA-29-1766 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-29-1768         TCGA-29-1769         TCGA-29-1770 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-29-1771         TCGA-29-1774         TCGA-29-1775 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-29-1776         TCGA-29-1777         TCGA-29-1778 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-29-1781         TCGA-29-1783         TCGA-29-1784 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-29-1785         TCGA-29-2414         TCGA-29-2425 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-29-2427         TCGA-29-2428         TCGA-29-2429 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-29-2431         TCGA-29-2432         TCGA-29-2434 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-29-2436         TCGA-30-1714         TCGA-30-1718 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-30-1853         TCGA-30-1855         TCGA-30-1856 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-30-1857         TCGA-30-1859         TCGA-30-1860 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-30-1861         TCGA-30-1862         TCGA-30-1866 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-30-1867         TCGA-30-1880         TCGA-30-1887 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-30-1891         TCGA-30-1892         TCGA-31-1944 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-31-1946         TCGA-31-1950         TCGA-31-1951 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-31-1953         TCGA-31-1955         TCGA-31-1956 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-31-1959         TCGA-36-1568         TCGA-36-1569 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-36-1570         TCGA-36-1571         TCGA-36-1574 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-36-1575         TCGA-36-1576         TCGA-36-1577 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-36-1578         TCGA-36-1580         TCGA-36-1581 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-36-2529         TCGA-36-2530         TCGA-36-2532 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-36-2534         TCGA-36-2537         TCGA-36-2538 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-36-2540         TCGA-36-2542         TCGA-36-2543 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-36-2544         TCGA-36-2545         TCGA-36-2547 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-36-2548         TCGA-36-2551         TCGA-36-2552 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-42-2582         TCGA-42-2588         TCGA-42-2589 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-42-2590         TCGA-42-2591         TCGA-57-1582 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-57-1583         TCGA-57-1584         TCGA-57-1585 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-57-1586         TCGA-57-1992         TCGA-57-1993 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-57-1994         TCGA-59-2348         TCGA-59-2349 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-59-2350         TCGA-59-2351         TCGA-59-2352 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-59-2354         TCGA-59-2355         TCGA-59-2363 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-59-2372         TCGA-61-1721         TCGA-61-1722 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-61-1724         TCGA-61-1725         TCGA-61-1727 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-61-1728         TCGA-61-1730         TCGA-61-1733 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-1734         TCGA-61-1736         TCGA-61-1737 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-1738         TCGA-61-1740         TCGA-61-1741 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-1743         TCGA-61-1895         TCGA-61-1899 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-61-1900         TCGA-61-1901         TCGA-61-1903 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-61-1904         TCGA-61-1906         TCGA-61-1907 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-1910         TCGA-61-1911         TCGA-61-1913 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-61-1914         TCGA-61-1915         TCGA-61-1917 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-1918         TCGA-61-1919         TCGA-61-1995 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-1998         TCGA-61-2000         TCGA-61-2002 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-61-2003         TCGA-61-2008         TCGA-61-2009 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-61-2012         TCGA-61-2016         TCGA-61-2017 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-61-2018         TCGA-61-2087         TCGA-61-2088 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-2092         TCGA-61-2094         TCGA-61-2095 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-61-2096         TCGA-61-2097         TCGA-61-2098 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-61-2101         TCGA-61-2102         TCGA-61-2104 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-61-2109         TCGA-61-2110         TCGA-61-2111 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-61-2113         TCGA-61-2610         TCGA-61-2611 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-61-2612         TCGA-61-2613         TCGA-61-2614 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
[1] "hr=" "1.1"
D78V2, continuous
D78V3, multiclass
                    clus
vv                   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  OMENTUM                           0                  2
  OVARY                           392                156
  PERITONEUM (OVARY)                1                  1
D78V4, continuous
D78V5, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      3  390
  22Q LOSS WILD-TYPE    0  159
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 3                  0
  YES              390                159
D78V6, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED    316   77
  22Q LOSS WILD-TYPE  132   27
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO               316                132
  YES               77                 27
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
               "PRIMARY.SITE.OF.DISEASE" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V6 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
