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fh_MutSigPreprocess
-i
UCEC
-b
hg19
-t
/xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_hg19.txt
-c
/xchip/cga1/annotation/db/tracks/hg19/c65e
-cw
no_longer_needed
-cat
4
-maf2
/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis8246557909726965071.att_MutSigPreprocess1.maf2.input.tsv
-maflabel1
Broad
-maflabel2
WashU
-maflabel3
Baylor
-wig2
/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis5967576392935947020.att_MutSigPreprocess1.wig2.input.tsv
-p
/xchip/cga1/reference/mutsig_params/MutSig1.5.params.txt

               perform_mutsig2_analysis: 0
     use_sample_specific_mutation_rates: 1
        analyze_silent_nonsilent_ratios: 1
                 sig_calculation_method: 'projection'
                           print_report: 0
                  clip_tumor_from_names: 1
                                  build: 'hg19'
             keep_barebones_fields_only: 0
    consolidate_adjacent_muts_threshold: 1
             remove_noncoding_mutations: 1
                    enforce_target_list: 0
                            target_list: [1x69 char]
                     mutation_blacklist: []
                     mutation_whitelist: []

Loading MAFs for WashU
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0G3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0G5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0G9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0GX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0R6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0R7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0R8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0R9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0RA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0VO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0VP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-A5-A0VQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AJ-A23M-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A051-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A052-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A053-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A054-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A056-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A059-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A05A-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A05D-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A05H-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A05J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A05N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A05P-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0L8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0L9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LF-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A0LV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AP-A1DQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A05S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A05T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A05U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A05W-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A05Y-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A05Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A060-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A062-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A063-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A064-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A06B-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A06H-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A06L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A0IS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A0IU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A0IW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A0J0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A0J1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A1C7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A1C8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A1CP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A2H5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-AX-A2HF-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0JN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0JR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0JS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0JT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0JV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0JY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0JZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0K0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0K1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0K2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0K3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0K4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0K6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0K7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0K8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A0K9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11E-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11G-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11H-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11I-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11M-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11W-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11Y-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A11Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A121-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A1MU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-B5-A1MY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0LW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0LX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0M0-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0M2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0M3-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0M4-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0M6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0M7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0M8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0M9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0MC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0MG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0MI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0MO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0MQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0MS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0MT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0MU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0RY-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0VT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0VV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0VW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0VX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0VZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0W1-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0W2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0YU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A0YV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A186-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A187-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A18A-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A18B-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A18C-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BG-A2AE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BK-A0C9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BK-A0CA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BK-A0CB-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BK-A0CC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BK-A139-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BK-A13C-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0T9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0TA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0TC-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0TD-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0TE-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0TG-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0TI-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0TJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0U5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0U7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0U8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0U9-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0UA-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0UF-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0UJ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0UL-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0UM-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0UT-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0UV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0V6-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0V7-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0V8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-BS-A0WQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A0ZN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A0ZO-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A0ZP-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A0ZQ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A0ZR-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A0ZS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A0ZU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A0ZV-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A0ZZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A101-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A102-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A103-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A15V-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A15W-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A15X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A15Z-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A160-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A161-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A163-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A165-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A167-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A168-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A169-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16B-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16D-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16E-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16G-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16I-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16J-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16O-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16X-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A16Y-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A174-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A176-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A177-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17A-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17B-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17C-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17D-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17F-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17H-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17K-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17L-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17M-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17N-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17Q-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17R-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17S-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17T-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A17U-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A1NU-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-D1-A1NX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-DI-A0WH-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-DI-A1NN-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-E6-A1LZ-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-EO-A1Y5-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-EO-A1Y8-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-EY-A1GS-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-EY-A212-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-FI-A2D2-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-FI-A2EW-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-FI-A2EX-01.maf.txt
Loaded /xchip/gdac_data/normalized/diced/ucec/tracerel__illuminaga_dnaseq__genome_wustl_edu__Level_2__Mutation_Calling__maf/genome.wustl.edu_UCEC.IlluminaGA_DNASeq.Level_2.2.6.0/TCGA-FI-A2F8-01.maf.txt
Concatenating structs...

                         BAM_file: [248]
                           Center: [248]
                       Chromosome: [248]
                     End_position: [248]
                   Entrez_Gene_Id: [248]
                      Hugo_Symbol: [248]
           Match_Norm_Seq_Allele1: [248]
           Match_Norm_Seq_Allele2: [248]
    Match_Norm_Validation_Allele1: [248]
    Match_Norm_Validation_Allele2: [248]
      Matched_Norm_Sample_Barcode: [248]
                  Mutation_Status: [248]
                       NCBI_Build: [248]
                 Reference_Allele: [248]
                            Score: [248]
                  Sequence_Source: [248]
                        Sequencer: [248]
                 Sequencing_Phase: [248]
                   Start_position: [248]
                           Strand: [248]
             Tumor_Sample_Barcode: [248]
                Tumor_Seq_Allele1: [248]
                Tumor_Seq_Allele2: [248]
         Tumor_Validation_Allele1: [248]
         Tumor_Validation_Allele2: [248]
                Validation_Method: [248]
                Validation_Status: [248]
           Variant_Classification: [248]
                     Variant_Type: [248]
              Verification_Status: [248]
                amino_acid_change: [248]
                           condel: [248]
                          dataset: [248]
                         dbSNP_RS: [248]
                 dbSNP_Val_Status: [248]
                           domain: [248]
                     normal_depth: [248]
                       normal_vaf: [248]
                          patient: [248]
                         polyphen: [248]
                        rna_depth: [248]
                          rna_vaf: [248]
                             sift: [248]
                           strand: [248]
                  transcript_name: [248]
                transcript_status: [248]
                      tumor_depth: [248]
                        tumor_vaf: [248]
                        ucsc_cons: [248]
                        ----TOTAL: [12152]
Calling preprocess_mutations...
Validation_Status:

      Unknown: [184824]
    ----TOTAL: [184824]
Omitting the following 29 mutations on nonstandard chromosomes:

    GL000192.1: [3]
    GL000205.1: [4]
    GL000209.1: [13]
    GL000212.1: [4]
    GL000213.1: [1]
    GL000218.1: [2]
    GL000229.1: [2]
     ----TOTAL: [29]
Removing the following non-coding mutations (based on "type" field):
          RNA: [2014]
    ----TOTAL: [2014]
Not enforcing any target list.
Collapsing adjacent mutations:
100000/182781 

    2 SNPs to one Complex_substitution (guessing "Missense"): [4]
                     2 SNPs to one DNP (guessing "Missense"): [123]
                                    2 SNPs/Indels to one INS: [2]
                                    2 SNPs/Indels to one SNP: [1]
                                                   ----TOTAL: [130]

Genes affected:
        A4GNT: [1]
       ABCA10: [1]
       ABCA12: [1]
       ABCA13: [1]
        ABCB4: [1]
       ABI3BP: [1]
       ADAM22: [1]
      ADAMTS5: [1]
         ADNP: [1]
     ARHGAP35: [1]
     ARHGEF12: [1]
        BACE1: [1]
        BAZ1B: [1]
         BMP1: [1]
     C13orf33: [1]
    C20orf141: [1]
     C20orf96: [1]
      CACNA1E: [1]
      CCDC127: [1]
        CDK16: [1]
         CDK3: [1]
        CENPJ: [1]
       CHMP2A: [1]
         CLMN: [1]
       COL3A1: [1]
       CPAMD8: [1]
         CPS1: [1]
         CTCF: [1]
         CUL1: [1]
       CYP1A2: [1]
      CYP2C19: [1]
        DCAF6: [1]
          DCT: [1]
         DHFR: [1]
       EFCAB6: [1]
        ERBB3: [1]
       FAM13A: [1]
         FLNA: [1]
         FLNC: [1]
        FLRT2: [1]
         FLT1: [1]
        FOXA2: [1]
     FRA10AC1: [1]
        FRMD6: [1]
       GABBR2: [1]
         GCM1: [1]
         GLMN: [1]
        GNAT1: [1]
        GNL3L: [1]
      GORASP1: [1]
       GPR112: [1]
        GRID1: [1]
       GRIN2B: [1]
       GTPBP1: [1]
        HADHA: [1]
       HAPLN3: [1]
        HCAR2: [1]
     HIST1H1D: [1]
     HIST1H4L: [1]
          HRC: [1]
       HSPA14: [1]
        IREB2: [1]
         IRX2: [1]
        KCMF1: [1]
        KCND2: [1]
     KIAA1797: [1]
    KIDINS220: [1]
       KIRREL: [1]
        KPNB1: [1]
         KRAS: [1]
         LCTL: [1]
       LINGO2: [1]
    LOC441016: [1]
    LOC643637: [1]
        LRCH2: [1]
       MCART1: [1]
         MSH4: [1]
        MXRA5: [1]
        MYH14: [1]
         MYH4: [1]
         NAV2: [1]
       NCAPH2: [1]
        NCOA4: [1]
         NGEF: [1]
         NMBR: [1]
        OR2T8: [1]
        OR5R1: [1]
       PCDH15: [1]
        PCDH7: [1]
       PCDHA6: [1]
       PCDHB1: [1]
         PIGT: [1]
     PNLIPRP1: [1]
        PTBP3: [1]
         PTEN: [1]
       QRICH2: [1]
        RAD50: [1]
      RALGPS1: [1]
        RBM23: [1]
         RERE: [1]
       RNF145: [1]
         RYR2: [1]
        SALL4: [1]
       SEC31A: [1]
       SERHL2: [1]
      SLC48A1: [1]
      SPECC1L: [1]
       SYNPO2: [1]
      TCP11L1: [1]
       TFAP2C: [1]
        TKTL2: [1]
         TLL1: [1]
        TRPS1: [1]
        UPF3B: [1]
        ZC3H6: [1]
        ZDBF2: [1]
      ZMYND12: [1]
        ZNF16: [1]
      ZNF286A: [1]
       ZNF594: [1]
       ZNF606: [1]
       ZNF675: [1]
       ZNF679: [1]
          ZP4: [1]
        KIF2B: [2]
       PCDH12: [2]
          TTN: [2]
    ----TOTAL: [130]

Patients affected:
    UCEC-A5-A0GA: [1]
    UCEC-A5-A0GB: [1]
    UCEC-A5-A0GH: [1]
    UCEC-A5-A0GJ: [1]
    UCEC-A5-A0GW: [1]
    UCEC-AJ-A23M: [1]
    UCEC-AP-A053: [1]
    UCEC-AP-A0L8: [1]
    UCEC-AP-A0LF: [1]
    UCEC-AX-A063: [1]
    UCEC-AX-A1C7: [1]
    UCEC-B5-A0JV: [1]
    UCEC-B5-A0K9: [1]
    UCEC-B5-A11G: [1]
    UCEC-B5-A11Q: [1]
    UCEC-B5-A11R: [1]
    UCEC-B5-A11W: [1]
    UCEC-BG-A0MQ: [1]
    UCEC-BG-A0VX: [1]
    UCEC-BG-A0YV: [1]
    UCEC-BG-A186: [1]
    UCEC-BS-A0TC: [1]
    UCEC-BS-A0U7: [1]
    UCEC-BS-A0U9: [1]
    UCEC-BS-A0V8: [1]
    UCEC-D1-A0ZS: [1]
    UCEC-D1-A15W: [1]
    UCEC-D1-A163: [1]
    UCEC-D1-A167: [1]
    UCEC-D1-A16B: [1]
    UCEC-D1-A16O: [1]
    UCEC-D1-A16S: [1]
    UCEC-D1-A16X: [1]
    UCEC-D1-A16Y: [1]
    UCEC-D1-A17N: [1]
    UCEC-E6-A1LZ: [1]
    UCEC-FI-A2EX: [1]
    UCEC-FI-A2F8: [1]
    UCEC-B5-A1MY: [2]
    UCEC-BK-A0C9: [2]
    UCEC-D1-A103: [2]
    UCEC-AX-A05Z: [3]
    UCEC-B5-A11N: [3]
    UCEC-AX-A0J0: [4]
    UCEC-AP-A059: [5]
    UCEC-AX-A0J1: [5]
    UCEC-D1-A17Q: [5]
    UCEC-AP-A051: [6]
    UCEC-BS-A0UF: [6]
    UCEC-BS-A0UV: [7]
    UCEC-B5-A0JY: [9]
    UCEC-B5-A11E: [9]
    UCEC-AP-A056: [12]
    UCEC-AP-A0LM: [12]
       ----TOTAL: [130]
100000/182651 
Collapsed 182781 muts to 182651 muts
Getting context: chr 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 
Done.
Saved UCEC.mutation_preprocessing_report.txt
HUGE STRUCT: SAVING CHUNK 1/2
  [save_struct] 37/70 38/70 39/70 40/70 41/70 42/70 43/70 44/70 45/70 46/70 47/70 48/70 49/70 50/70 51/70 52/70 53/70 54/70 55/70 56/70 57/70 58/70 59/70 60/70 61/70 62/70 63/70 64/70 65/70 66/70 67/70 68/70 69/70 70/70  [collapse]
HUGE STRUCT: SAVING CHUNK 2/2
Saved UCEC.maf
Total of 248 patients had both MAF and WIG data.
Saved UCEC.patients.txt
Saved UCEC.coverage.prepare.txt
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.84.3413/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/144939
mFile: fh_MutSigPreprocess
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigPreprocess.84.3413/fh_MutSigPreprocess -i UCEC -b hg19 -t /xchip/cga1/annotation/db/capture/Refseq_exons_good_20101221_hg19.txt -c /xchip/cga1/annotation/db/tracks/hg19/c65e -cw no_longer_needed -cat 4 -maf2 /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis8246557909726965071.att_MutSigPreprocess1.maf2.input.tsv -maflabel1 Broad -maflabel2 WashU -maflabel3 Baylor -wig2 /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_deadline/Axis5967576392935947020.att_MutSigPreprocess1.wig2.input.tsv -p /xchip/cga1/reference/mutsig_params/MutSig1.5.params.txt
