Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2012_07_25 analyses Run

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF

BLCA	126	67	58	0	78	0	56	0	88	0	28
BRCA	899	862	833	0	858	529	777	0	809	408	507
CESC	122	31	68	0	0	0	0	0	42	0	36
COADREAD	592	591	575	76	584	224	83	0	255	399	224
DLBC	27	0	0	0	0	0	0	0	0	0	0
GBM	596	564	563	0	287	542	0	491	0	214	276
HNSC	312	293	288	0	292	0	263	0	259	0	0
KICH	65	0	0	0	0	0	0	0	0	0	0
KIRC	502	502	490	0	500	72	469	0	463	454	403
KIRP	135	95	75	0	117	16	63	0	43	0	0
LAML	202	200	0	0	192	0	179	0	187	0	199
LGG	181	161	144	0	140	27	47	0	67	0	0
LIHC	99	62	58	0	0	0	17	0	54	0	0
LNNH	2	0	0	0	0	0	0	0	0	0	0
LUAD	439	292	265	0	347	32	240	0	100	0	229
LUSC	360	279	282	0	282	154	223	0	202	0	178
OV	592	580	564	0	551	568	297	564	454	412	316
PAAD	48	0	14	0	30	0	0	0	0	0	0
PRAD	174	127	100	0	153	0	53	0	81	0	83
SARC	29	0	0	0	0	0	0	0	0	0	0
SKCM	253	129	219	0	240	0	212	0	240	0	0
STAD	226	159	132	0	133	0	57	0	127	0	133
THCA	353	188	228	0	230	0	158	0	138	0	0
UCEC	512	451	430	0	451	54	266	0	367	200	248
PANCANCER	6846	5633	5386	76	5465	2218	3460	1055	3976	2087	2860