Clinical Features	Time to Death		AGE		PRIMARY.SITE.OF.DISEASE		KARNOFSKY.PERFORMANCE.SCORE		RADIATIONS.RADIATION.REGIMENINDICATION		NEOADJUVANT.THERAPY	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p34.3)	193 (35%)	359	0.75618	1	0.068	1	1	1	0.87362	1	0.28088	1	1	1
Amp Peak  2(1q21.3)	290 (53%)	262	0.83161	1	0.00097214	0.462	0.17495	1	0.2593	1	1	1	0.74452	1
Amp Peak  3(1q42.3)	242 (44%)	310	0.52283	1	0.0050201	1	0.036426	1	0.62784	1	1	1	0.91312	1
Amp Peak  4(2p23.2)	179 (32%)	373	0.25564	1	0.14561	1	0.7926	1	0.66216	1	1	1	0.41737	1
Amp Peak  5(2q31.2)	189 (34%)	363	0.65403	1	0.22995	1	0.79664	1	0.7138	1	0.03972	1	1	1
Amp Peak  6(3q26.2)	429 (78%)	123	0.55613	1	0.0044725	1	0.63633	1	0.054911	1	0.53132	1	0.60374	1
Amp Peak  7(4p16.3)	121 (22%)	431	0.47121	1	0.87436	1	0.62947	1	0.10674	1	0.52472	1	0.35862	1
Amp Peak  8(4q13.3)	74 (13%)	478	0.099065	1	0.12438	1	0.43867	1	0.84136	1	1	1	1	1
Amp Peak  9(5p15.33)	257 (47%)	295	0.3015	1	0.02694	1	0.46702	1	0.68542	1	1	1	0.44688	1
Amp Peak 10(6p22.3)	237 (43%)	315	0.13537	1	0.023213	1	0.75905	1	0.34985	1	1	1	0.74254	1
Amp Peak 11(6p21.1)	175 (32%)	377	0.19231	1	0.00053	0.253	0.78353	1	0.03578	1	1	1	1	1
Amp Peak 12(6q21)	87 (16%)	465	0.44709	1	0.0037732	1	0.49746	1	0.82435	1	0.40283	1	1	1
Amp Peak 13(7q36.1)	249 (45%)	303	0.51081	1	0.63451	1	1	1	0.002586	1	0.25583	1	0.51331	1
Amp Peak 14(8p11.21)	159 (29%)	393	0.36277	1	0.002096	0.991	0.15849	1	0.42569	1	0.20064	1	0.81068	1
Amp Peak 15(8q24.21)	407 (74%)	145	0.48823	1	0.0026331	1	1	1	0.75229	1	1	1	0.26617	1
Amp Peak 16(10p15.3)	203 (37%)	349	0.10705	1	0.0036011	1	0.12641	1	0.63697	1	1	1	0.055032	1
Amp Peak 17(10q22.3)	127 (23%)	425	0.63564	1	0.2357	1	0.10252	1	0.37148	1	0.54434	1	0.60587	1
Amp Peak 18(11p13)	88 (16%)	464	0.015963	1	0.57455	1	0.50179	1	0.63584	1	1	1	0.18445	1
Amp Peak 19(11q14.1)	197 (36%)	355	0.74479	1	0.71527	1	0.40802	1	0.63697	1	1	1	0.42656	1
Amp Peak 20(12p13.33)	268 (49%)	284	0.92438	1	9.395e-08	4.56e-05	1	1	0.24753	1	0.61372	1	0.039349	1
Amp Peak 21(12p12.1)	255 (46%)	297	0.26998	1	1.3567e-06	0.000654	0.044964	1	0.059212	1	1	1	0.44489	1
Amp Peak 22(12q13.11)	162 (29%)	390	0.11176	1	0.00046302	0.221	0.078111	1	0.022819	1	1	1	0.28453	1
Amp Peak 23(12q15)	148 (27%)	404	0.18553	1	0.0002676	0.128	0.29232	1	0.49051	1	1	1	0.46193	1
Amp Peak 24(14q11.2)	111 (20%)	441	0.6859	1	0.16274	1	0.59374	1	0.36086	1	0.49078	1	0.41617	1
Amp Peak 25(14q32.33)	108 (20%)	444	0.21655	1	0.00056452	0.269	0.58253	1	0.32249	1	0.099337	1	0.58454	1
Amp Peak 26(15q26.3)	125 (23%)	427	0.031223	1	0.059164	1	0.64308	1	0.59544	1	1	1	0.013207	1
Amp Peak 27(17q25.3)	124 (22%)	428	0.072773	1	0.16585	1	1	1	0.49952	1	0.5346	1	0.43496	1
Amp Peak 28(18q11.2)	105 (19%)	447	0.90633	1	0.062367	1	0.070557	1	0.48465	1	0.46967	1	0.49028	1
Amp Peak 29(19p13.12)	221 (40%)	331	0.70263	1	0.022666	1	0.76869	1	0.42356	1	1	1	0.2667	1
Amp Peak 30(19q12)	254 (46%)	298	0.05371	1	1.0525e-06	0.000508	0.16812	1	0.98783	1	0.59684	1	0.029167	1
Amp Peak 31(19q13.2)	169 (31%)	383	0.0064335	1	3.9258e-06	0.00189	0.76935	1	0.23183	1	0.22336	1	0.033862	1
Amp Peak 32(20q11.21)	272 (49%)	280	0.24136	1	1.1378e-08	5.53e-06	1	1	0.22886	1	1	1	0.038555	1
Amp Peak 33(20q13.33)	331 (60%)	221	0.41283	1	9.2477e-06	0.00444	0.76869	1	0.94567	1	1	1	0.43884	1
Amp Peak 34(22q12.2)	70 (13%)	482	0.63964	1	0.017554	1	1	1	0.55701	1	1	1	0.62336	1
Del Peak  1(1p36.23)	160 (29%)	392	0.19383	1	0.20273	1	0.74681	1	0.73761	1	0.5602	1	0.47441	1
Del Peak  2(1p36.11)	209 (38%)	343	0.09438	1	0.1339	1	0.77789	1	0.33239	1	1	1	0.82269	1
Del Peak  3(1p31.1)	103 (19%)	449	0.93984	1	0.51859	1	1	1	0.27444	1	0.4625	1	0.7806	1
Del Peak  4(1q32.3)	70 (13%)	482	0.21402	1	0.26673	1	1	1	0.33996	1	0.33476	1	0.19333	1
Del Peak  5(2p25.3)	83 (15%)	469	0.31299	1	0.60136	1	0.47989	1	0.61762	1	0.38725	1	0.76069	1
Del Peak  6(2q22.1)	94 (17%)	458	0.13552	1	0.72667	1	0.52714	1	0.23183	1	1	1	0.042307	1
Del Peak  7(2q37.3)	122 (22%)	430	0.58339	1	0.040542	1	0.21338	1	0.83297	1	0.12443	1	0.60112	1
Del Peak  8(3p26.2)	150 (27%)	402	0.68321	1	0.24412	1	0.14167	1	0.26664	1	0.019774	1	0.71379	1
Del Peak  9(3p21.1)	133 (24%)	419	0.98593	1	0.14075	1	1	1	0.5372	1	0.14567	1	0.70274	1
Del Peak 10(3q13.31)	56 (10%)	496	0.78961	1	0.96591	1	1	1	0.037055	1	1	1	0.71876	1
Del Peak 11(4q22.1)	336 (61%)	216	0.7021	1	0.40871	1	1	1	0.82989	1	1	1	0.11845	1
Del Peak 12(4q34.3)	355 (64%)	197	0.75225	1	0.38154	1	1	1	0.1152	1	0.55602	1	0.73336	1
Del Peak 13(5q11.2)	302 (55%)	250	0.81451	1	0.55572	1	1	1	0.34953	1	0.59245	1	0.22907	1
Del Peak 14(5q13.2)	364 (66%)	188	0.38967	1	0.27459	1	1	1	0.19965	1	0.26858	1	0.30284	1
Del Peak 15(5q14.3)	342 (62%)	210	0.75641	1	0.31329	1	1	1	0.13666	1	0.56079	1	0.82268	1
Del Peak 16(6p25.3)	104 (19%)	448	0.39627	1	0.0014581	0.691	1	1	0.49	1	0.46609	1	0.88998	1
Del Peak 17(6q27)	331 (60%)	221	0.23465	1	7.3184e-07	0.000354	1	1	0.31389	1	1	1	0.2667	1
Del Peak 18(7p22.1)	210 (38%)	342	0.082649	1	0.014813	1	0.77706	1	0.20666	1	1	1	0.91132	1
Del Peak 19(8p23.3)	347 (63%)	205	0.21208	1	0.25461	1	0.41147	1	0.8404	1	1	1	0.57537	1
Del Peak 20(8p21.2)	373 (68%)	179	0.41996	1	0.22173	1	1	1	0.50266	1	1	1	0.90785	1
Del Peak 21(9p24.3)	216 (39%)	336	0.71853	1	0.067219	1	0.13689	1	0.97896	1	0.56398	1	0.65582	1
Del Peak 22(9q34.13)	283 (51%)	269	0.86926	1	0.075121	1	0.18104	1	0.98496	1	0.24912	1	0.82782	1
Del Peak 23(10p15.3)	88 (16%)	464	0.28139	1	0.58167	1	1	1	0.15044	1	0.40668	1	1	1
Del Peak 24(10q23.31)	175 (32%)	377	0.12203	1	0.43514	1	0.78353	1	0.47768	1	0.23736	1	0.41311	1
Del Peak 25(10q26.3)	143 (26%)	409	0.19263	1	0.33864	1	0.69975	1	0.62332	1	1	1	0.53497	1
Del Peak 26(11p15.5)	285 (52%)	267	0.14853	1	0.34406	1	0.054102	1	0.1335	1	1	1	0.9135	1
Del Peak 27(11q25)	144 (26%)	408	0.63865	1	0.14434	1	0.13092	1	0.28611	1	0.16815	1	0.46035	1
Del Peak 28(12q23.1)	149 (27%)	403	0.23383	1	0.011555	1	0.71705	1	0.28467	1	1	1	0.087241	1
Del Peak 29(12q24.33)	167 (30%)	385	0.6333	1	0.034709	1	0.17412	1	0.4493	1	0.55723	1	0.23597	1
Del Peak 30(13q12.11)	274 (50%)	278	0.14685	1	0.052706	1	0.49548	1	0.33646	1	1	1	0.82781	1
Del Peak 31(13q14.2)	305 (55%)	247	0.38685	1	0.21159	1	0.75462	1	0.31129	1	0.58929	1	0.66166	1
Del Peak 32(14q23.3)	250 (45%)	302	0.75195	1	0.55016	1	0.25354	1	0.10999	1	0.25531	1	0.5848	1
Del Peak 33(15q15.1)	301 (55%)	251	0.3957	1	0.43057	1	0.2532	1	0.23323	1	0.2548	1	0.27495	1
Del Peak 34(16p13.3)	248 (45%)	304	0.69207	1	0.0802	1	0.45377	1	0.1335	1	1	1	0.82703	1
Del Peak 35(16q22.1)	401 (73%)	151	0.88479	1	0.1422	1	0.30174	1	0.062665	1	0.56564	1	0.80735	1
Del Peak 36(16q23.1)	397 (72%)	155	0.14723	1	0.064559	1	0.73359	1	0.03578	1	0.563	1	0.22737	1
Del Peak 37(16q24.3)	379 (69%)	173	0.44451	1	0.013974	1	0.77888	1	0.044339	1	0.55553	1	0.29389	1
Del Peak 38(17p12)	439 (80%)	113	0.99715	1	0.25188	1	0.60108	1	0.89468	1	1	1	0.78849	1
Del Peak 39(17q11.2)	420 (76%)	132	0.12858	1	0.0069647	1	0.044279	1	0.87498	1	1	1	0.07468	1
Del Peak 40(18q23)	322 (58%)	230	0.17691	1	0.98918	1	0.029682	1	0.30862	1	1	1	0.036174	1
Del Peak 41(19p13.3)	454 (82%)	98	0.95814	1	0.25429	1	1	1	0.34056	1	1	1	0.88705	1
Del Peak 42(19p13.3)	409 (74%)	143	0.76933	1	0.51993	1	0.69975	1	0.75399	1	0.57206	1	0.9013	1
Del Peak 43(19q13.32)	245 (44%)	307	0.15013	1	0.41912	1	0.25542	1	0.59232	1	0.086838	1	0.91285	1
Del Peak 44(19q13.43)	229 (41%)	323	0.096065	1	0.065158	1	0.43049	1	0.16935	1	1	1	0.43959	1
Del Peak 45(21q11.2)	144 (26%)	408	0.11762	1	0.99444	1	0.70269	1	0.69131	1	1	1	0.71008	1
Del Peak 46(21q22.3)	177 (32%)	375	0.4806	1	0.37896	1	0.7881	1	0.866	1	1	1	0.1302	1
Del Peak 47(22q13.32)	444 (80%)	108	0.36659	1	0.56872	1	0.17359	1	0.56801	1	1	1	0.78468	1