Broad GDAC analyses__2012_08_25__coadread

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
COADREAD	592	591	575	104	584	224	83	0	255	399	224

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful
1	Aggregate_Clusters	0	1
2	Aggregate_Gene_Status	0	1
3	CopyNumber_Clustering_CNMF	0	1
4	CopyNumber_GeneBySample	0	1
5	CopyNumber_Gistic2	0	1
6	CopyNumber_Gistic2_Postprocess_Focal	0	1
7	Correlate_Clinical_vs_CopyNumber_Arm	0	1
8	Correlate_Clinical_vs_CopyNumber_Focal	0	1
9	Correlate_Clinical_vs_Methylation	0	1
10	Correlate_Clinical_vs_miR	1	0
11	Correlate_Clinical_vs_miRseq	0	1
12	Correlate_Clinical_vs_Molecular_Signatures	0	1
13	Correlate_Clinical_vs_mRNA	0	1
14	Correlate_Clinical_vs_mRNAseq	1	0
15	Correlate_Clinical_vs_Mutation	0	1
16	Correlate_Clinical_vs_RPPA	0	1
17	Correlate_CopyNumber_vs_miR	1	0
18	Correlate_CopyNumber_vs_mRNA	0	1
19	Correlate_CopyNumber_vs_mRNAseq	0	1
20	Correlate_Methylation_vs_mRNA	0	1
21	Methylation_Clustering_CNMF	0	1
22	Methylation_Preprocess	0	1
23	miRseq_Clustering_CNMF	0	1
24	miRseq_Clustering_Consensus	0	1
25	miRseq_Preprocess	0	1
26	miR_Clustering_CNMF	1	0
27	miR_Clustering_Consensus	1	0
28	miR_FindDirectTargets	1	0
29	miR_Preprocess	1	0
30	mRNAseq_Clustering_CNMF	0	1
31	mRNAseq_Clustering_Consensus	0	1
32	mRNAseq_Preprocess	0	1
33	mRNA_Clustering_CNMF	0	1
34	mRNA_Clustering_Consensus	0	1
35	mRNA_Preprocess_Median	0	1
36	Mutation_Assessor	0	1
37	Mutation_Significance	0	1
38	Pathway_FindEnrichedGenes	0	1
39	Pathway_Paradigm_Expression	0	1
40	Pathway_Paradigm_Expression_CopyNumber	0	1
41	RPPA_Clustering_CNMF	0	1
42	RPPA_Clustering_Consensus	0	1
	Total	7	35

This table generated on Mon Oct 1 07:31:06 2012