Broad GDAC analyses__2012_08_25__pancancer

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
PANCANCER	6881	5671	5810	478	5471	2224	3527	1061	4109	2731	2860

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Runnable	InProcess	Successful	Unsuccessful
1	Aggregate_Clusters	0	1	0	0	0
2	Aggregate_Gene_Status	1	0	0	0	0
3	CopyNumber_Clustering_CNMF	1	0	0	0	0
4	CopyNumber_GeneBySample	0	0	0	0	1
5	CopyNumber_Gistic2	0	0	1	0	0
6	CopyNumber_Gistic2_Postprocess_Focal	1	0	0	0	0
7	Correlate_Clinical_vs_CopyNumber_Arm	1	0	0	0	0
8	Correlate_Clinical_vs_CopyNumber_Focal	1	0	0	0	0
9	Correlate_Clinical_vs_Methylation	0	0	0	0	1
10	Correlate_Clinical_vs_miR	0	0	0	1	0
11	Correlate_Clinical_vs_miRseq	1	0	0	0	0
12	Correlate_Clinical_vs_Molecular_Signatures	1	0	0	0	0
13	Correlate_Clinical_vs_mRNA	0	0	0	1	0
14	Correlate_Clinical_vs_mRNAseq	1	0	0	0	0
15	Correlate_Clinical_vs_Mutation	1	0	0	0	0
16	Correlate_Clinical_vs_RPPA	1	0	0	0	0
17	Correlate_CopyNumber_vs_miR	1	0	0	0	0
18	Correlate_CopyNumber_vs_mRNA	1	0	0	0	0
19	Correlate_CopyNumber_vs_mRNAseq	1	0	0	0	0
20	Correlate_Methylation_vs_mRNA	0	0	0	0	1
21	Methylation_Clustering_CNMF	0	0	0	0	1
22	Methylation_Preprocess	0	0	0	1	0
23	miRseq_Clustering_CNMF	1	0	0	0	0
24	miRseq_Clustering_Consensus	1	0	0	0	0
25	miRseq_Preprocess	1	0	0	0	0
26	miR_Clustering_CNMF	0	0	0	1	0
27	miR_Clustering_Consensus	0	0	0	1	0
28	miR_FindDirectTargets	0	0	0	1	0
29	miR_Preprocess	0	0	0	1	0
30	mRNAseq_Clustering_CNMF	1	0	0	0	0
31	mRNAseq_Clustering_Consensus	1	0	0	0	0
32	mRNAseq_Preprocess	0	0	1	0	0
33	mRNA_Clustering_CNMF	0	0	0	0	1
34	mRNA_Clustering_Consensus	0	0	0	0	1
35	mRNA_Preprocess_Median	0	0	0	1	0
36	Mutation_Assessor	1	0	0	0	0
37	Mutation_Significance	0	0	1	0	0
38	Pathway_FindEnrichedGenes	1	0	0	0	0
39	Pathway_Paradigm_Expression	0	0	0	0	1
40	Pathway_Paradigm_Expression_CopyNumber	1	0	0	0	0
41	RPPA_Clustering_CNMF	1	0	0	0	0
42	RPPA_Clustering_Consensus	1	0	0	0	0
	Total	23	1	3	8	7

This table generated on Mon Oct 1 07:31:11 2012