Broad GDAC analyses__2012_08_25__stad

Tumor	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNAseq	miR	miRseq	RPPA	MAF
STAD	226	159	161	0	133	0	57	0	151	0	133

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful	Unsuccessful
1	Aggregate_Clusters	0	1	0
2	Aggregate_Gene_Status	0	1	0
3	CopyNumber_Clustering_CNMF	0	1	0
4	CopyNumber_GeneBySample	0	1	0
5	CopyNumber_Gistic2	0	1	0
6	CopyNumber_Gistic2_Postprocess_Focal	0	1	0
7	Correlate_Clinical_vs_CopyNumber_Arm	0	1	0
8	Correlate_Clinical_vs_CopyNumber_Focal	0	1	0
9	Correlate_Clinical_vs_Methylation	0	1	0
10	Correlate_Clinical_vs_miR	1	0	0
11	Correlate_Clinical_vs_miRseq	0	1	0
12	Correlate_Clinical_vs_Molecular_Signatures	0	0	1
13	Correlate_Clinical_vs_mRNA	1	0	0
14	Correlate_Clinical_vs_mRNAseq	0	1	0
15	Correlate_Clinical_vs_Mutation	0	1	0
16	Correlate_Clinical_vs_RPPA	1	0	0
17	Correlate_CopyNumber_vs_miR	1	0	0
18	Correlate_CopyNumber_vs_mRNA	1	0	0
19	Correlate_CopyNumber_vs_mRNAseq	0	1	0
20	Correlate_Methylation_vs_mRNA	0	1	0
21	Methylation_Clustering_CNMF	0	1	0
22	Methylation_Preprocess	0	1	0
23	miRseq_Clustering_CNMF	0	1	0
24	miRseq_Clustering_Consensus	0	1	0
25	miRseq_Preprocess	0	1	0
26	miR_Clustering_CNMF	1	0	0
27	miR_Clustering_Consensus	1	0	0
28	miR_FindDirectTargets	1	0	0
29	miR_Preprocess	1	0	0
30	mRNAseq_Clustering_CNMF	0	1	0
31	mRNAseq_Clustering_Consensus	0	1	0
32	mRNAseq_Preprocess	0	1	0
33	mRNA_Clustering_CNMF	1	0	0
34	mRNA_Clustering_Consensus	1	0	0
35	mRNA_Preprocess_Median	1	0	0
36	Mutation_Assessor	0	1	0
37	Mutation_Significance	0	1	0
38	Pathway_FindEnrichedGenes	1	0	0
39	Pathway_Paradigm_Expression	1	0	0
40	Pathway_Paradigm_Expression_CopyNumber	1	0	0
41	RPPA_Clustering_CNMF	1	0	0
42	RPPA_Clustering_Consensus	1	0	0
	Total	17	24	1

This table generated on Mon Oct 1 07:31:12 2012