Broad GDAC Analyses Status
analyses__2012_08_25__thca_00 Run for Tumor Type: THCA

TumorBCRClinicalCNLowPMethylationmRNAmRNAseqmiRmiRseqRPPAMAF
THCA353193268812300158018700

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PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1Aggregate_Clusters00010
2Aggregate_Gene_Status00010
3CopyNumber_Clustering_CNMF00010
4CopyNumber_GeneBySample00010
5CopyNumber_Gistic200010
6CopyNumber_Gistic2_Postprocess_Focal00010
7Correlate_Clinical_vs_CopyNumber_Arm00010
8Correlate_Clinical_vs_CopyNumber_Focal00010
9Correlate_Clinical_vs_Methylation00010
10Correlate_Clinical_vs_miR10000
11Correlate_Clinical_vs_miRseq00010
12Correlate_Clinical_vs_Molecular_Signatures00010
13Correlate_Clinical_vs_mRNA10000
14Correlate_Clinical_vs_mRNAseq00010
15Correlate_Clinical_vs_Mutation10000
16Correlate_Clinical_vs_RPPA10000
17Correlate_CopyNumber_vs_miR10000
18Correlate_CopyNumber_vs_mRNA10000
19Correlate_CopyNumber_vs_mRNAseq00010
20Correlate_Methylation_vs_mRNA00010
21Methylation_Clustering_CNMF00010
22Methylation_Preprocess00010
23miRseq_Clustering_CNMF00010
24miRseq_Clustering_Consensus00010
25miRseq_Preprocess00010
26miR_Clustering_CNMF10000
27miR_Clustering_Consensus10000
28miR_FindDirectTargets10000
29miR_Preprocess10000
30mRNAseq_Clustering_CNMF00010
31mRNAseq_Clustering_Consensus00010
32mRNAseq_Preprocess00010
33mRNA_Clustering_CNMF10000
34mRNA_Clustering_Consensus10000
35mRNA_Preprocess_Median10000
36Mutation_Assessor10000
37Mutation_Significance10000
38Pathway_FindEnrichedGenes10000
39Pathway_Paradigm_Expression10000
40Pathway_Paradigm_Expression_CopyNumber10000
41RPPA_Clustering_CNMF10000
42RPPA_Clustering_Consensus10000
Total2000220

This table generated on Mon Oct 1 07:31:12 2012