
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.59.3844/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.59.3844/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/COADREAD/1712840/1.GDAC_mergedClustering.Finished/COADREAD.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/COADREAD/1669311/1.GDAC_clinicalDataPicker.Finished/COADREAD.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=591, in cluster file=585, common to both=585
[1]   7 585
[1] "MRNA_CNMF"
[1] 3
 1  2  3  4 
63 48 73 40 
 1  2  3  4 
63 48 73 40 
[1] "MRNA_CHIERARCHICAL"
[1] 3
  1   2   3 
 47  64 113 
  1   2   3 
 47  64 113 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
141 111  97 
  1   2   3 
141 111  97 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4 
17 17 27 22 
 1  2  3  4 
17 17 27 22 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3  4 
17 16 28 22 
 1  2  3  4 
17 16 28 22 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
 54 114  87 
  1   2   3 
 54 114  87 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2 
 80 175 
  1   2 
 80 175 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "HISTOLOGICALTYPE"                      
[11] "PATHOLOGICSPREAD(PT)"                  
[12] "PATHOLOGICSPREAD(PN)"                  
[13] "PATHOLOGICSPREAD(M)"                   
[14] "TUMORSTAGE"                            
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "NEOADJUVANTTHERAPY"                    
[17] "BATCHNUMBER"                           

Input Data has 17 rows and 585 columns.

[1] "Batch" "17"   
[1] "Last Follow UP"
TCGA-A6-2670 TCGA-A6-2671 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2675 TCGA-A6-2676 
         423          648          503          523          515          447 
TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2679 TCGA-A6-2680 TCGA-A6-2681 TCGA-A6-2682 
         541          437          595          522          552          424 
TCGA-A6-2683 TCGA-A6-2684 TCGA-A6-2685 TCGA-A6-2686 TCGA-A6-3807 TCGA-A6-3808 
         472          387          464          488          332          278 
TCGA-A6-3809 TCGA-A6-3810 TCGA-A6-4105 TCGA-A6-4107 TCGA-A6-5656 TCGA-A6-5657 
         313          246          441          231          462          367 
TCGA-A6-5659 TCGA-A6-5660 TCGA-A6-5661 TCGA-A6-5662 TCGA-A6-5664 TCGA-A6-5665 
         286          342          306          297          362          286 
TCGA-A6-5666 TCGA-A6-5667 TCGA-A6-6137 TCGA-A6-6138 TCGA-A6-6140 TCGA-A6-6141 
         244          320          195          181          124          129 
TCGA-A6-6142 TCGA-A6-6648 TCGA-A6-6649 TCGA-A6-6650 TCGA-A6-6651 TCGA-A6-6652 
         133          253          146          172          248          134 
TCGA-A6-6653 TCGA-A6-6654 TCGA-A6-6780 TCGA-A6-6781 TCGA-A6-6782 TCGA-AA-3488 
          90          177           86          158          164           91 
TCGA-AA-3489 TCGA-AA-3492 TCGA-AA-3494 TCGA-AA-3495 TCGA-AA-3496 TCGA-AA-3502 
          31           NA           31           31           31           31 
TCGA-AA-3506 TCGA-AA-3509 TCGA-AA-3510 TCGA-AA-3511 TCGA-AA-3514 TCGA-AA-3516 
          NA           NA           31           NA           NA           NA 
TCGA-AA-3517 TCGA-AA-3518 TCGA-AA-3519 TCGA-AA-3520 TCGA-AA-3521 TCGA-AA-3522 
          NA           31           NA           NA           NA           NA 
TCGA-AA-3524 TCGA-AA-3525 TCGA-AA-3526 TCGA-AA-3527 TCGA-AA-3529 TCGA-AA-3530 
          NA           NA           30           NA           NA           NA 
TCGA-AA-3531 TCGA-AA-3532 TCGA-AA-3534 TCGA-AA-3538 TCGA-AA-3542 TCGA-AA-3543 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3544 TCGA-AA-3548 TCGA-AA-3549 TCGA-AA-3552 TCGA-AA-3553 TCGA-AA-3554 
          NA           NA           NA           NA           NA           NA 
TCGA-AA-3555 TCGA-AA-3556 TCGA-AA-3558 TCGA-AA-3560 TCGA-AA-3561 TCGA-AA-3562 
          30           NA           NA           NA           NA           31 
TCGA-AA-3655 TCGA-AA-3660 TCGA-AA-3662 TCGA-AA-3663 TCGA-AA-3664 TCGA-AA-3666 
          NA           31           NA           31           NA           31 
TCGA-AA-3667 TCGA-AA-3672 TCGA-AA-3673 TCGA-AA-3675 TCGA-AA-3678 TCGA-AA-3679 
          NA           NA           NA           31           NA           30 
TCGA-AA-3680 TCGA-AA-3681 TCGA-AA-3684 TCGA-AA-3685 TCGA-AA-3688 TCGA-AA-3692 
          NA           NA           NA           30           NA           NA 
TCGA-AA-3693 TCGA-AA-3695 TCGA-AA-3696 TCGA-AA-3697 TCGA-AA-3710 TCGA-AA-3712 
          NA           NA           NA           29           31           NA 
TCGA-AA-3713 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3812 TCGA-AA-3814 TCGA-AA-3815 
          29           30           30           NA           NA           NA 
TCGA-AA-3818 TCGA-AA-3819 TCGA-AA-3821 TCGA-AA-3831 TCGA-AA-3833 TCGA-AA-3837 
          NA           NA           NA           NA           NA           31 
TCGA-AA-3841 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3845 TCGA-AA-3846 TCGA-AA-3848 
          NA           31           28           NA           30           30 
TCGA-AA-3850 TCGA-AA-3851 TCGA-AA-3852 TCGA-AA-3854 TCGA-AA-3855 TCGA-AA-3856 
          NA           NA           NA           31           NA           NA 
TCGA-AA-3858 TCGA-AA-3860 TCGA-AA-3861 TCGA-AA-3862 TCGA-AA-3864 TCGA-AA-3866 
          NA           NA           NA           31           NA           NA 
TCGA-AA-3867 TCGA-AA-3869 TCGA-AA-3870 TCGA-AA-3872 TCGA-AA-3875 TCGA-AA-3877 
          NA           NA           NA           NA           NA           30 
TCGA-AA-3930 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3950 
          NA           30           31           30           30           31 
TCGA-AA-3952 TCGA-AA-3955 TCGA-AA-3956 TCGA-AA-3966 TCGA-AA-3968 TCGA-AA-3970 
          31           NA           NA           31           NA           NA 
TCGA-AA-3971 TCGA-AA-3972 TCGA-AA-3973 TCGA-AA-3975 TCGA-AA-3976 TCGA-AA-3977 
          NA           NA           NA           30           NA           31 
TCGA-AA-3979 TCGA-AA-3980 TCGA-AA-3982 TCGA-AA-3984 TCGA-AA-3986 TCGA-AA-3989 
          NA           NA           NA           NA           30           NA 
TCGA-AA-3994 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00F 
          NA          424          548          578          913         1035 
TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00N TCGA-AA-A00O TCGA-AA-A00Q 
         548          548          517          122          822          822 
TCGA-AA-A00R TCGA-AA-A00U TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 
          30          517          456          669          638          457 
TCGA-AA-A01C TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K 
         457           30          396          365          365          396 
TCGA-AA-A01P TCGA-AA-A01Q TCGA-AA-A01R TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V 
        1158           31         1065           31         1005         1065 
TCGA-AA-A01X TCGA-AA-A01Z TCGA-AA-A022 TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02E 
         791          638           NA         1188         1580           89 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02K TCGA-AA-A02O TCGA-AA-A02R 
        1215           61          153          425           28          670 
TCGA-AA-A02W TCGA-AA-A02Y TCGA-AA-A03F TCGA-AA-A03J TCGA-AD-5900 TCGA-AD-6548 
        1246         1215          548         1245            2            3 
TCGA-AD-6888 TCGA-AD-6889 TCGA-AD-6890 TCGA-AD-6895 TCGA-AD-6899 TCGA-AD-6901 
         128         1719           24           22           47           31 
TCGA-AD-6963 TCGA-AD-6964 TCGA-AD-6965 TCGA-AM-5820 TCGA-AM-5821 TCGA-AU-3779 
           3           30            6           14           28           NA 
TCGA-AU-6004 TCGA-AY-4070 TCGA-AY-4071 TCGA-AY-5543 TCGA-AY-6196 TCGA-AY-6197 
          40          496           29          230            6          112 
TCGA-AY-6386 TCGA-AZ-4308 TCGA-AZ-4313 TCGA-AZ-4315 TCGA-AZ-4323 TCGA-AZ-4614 
         162         1714          957         1334           NA          172 
TCGA-AZ-4615 TCGA-AZ-4616 TCGA-AZ-4681 TCGA-AZ-4682 TCGA-AZ-4684 TCGA-AZ-5403 
         505           NA         2180          680         1705           NA 
TCGA-AZ-5407 TCGA-AZ-6598 TCGA-AZ-6599 TCGA-AZ-6600 TCGA-AZ-6601 TCGA-AZ-6603 
        1395           NA           NA           NA           NA           NA 
TCGA-AZ-6605 TCGA-AZ-6606 TCGA-AZ-6607 TCGA-AZ-6608 TCGA-CA-5254 TCGA-CA-5255 
          NA           NA           NA           NA            5            2 
TCGA-CA-5256 TCGA-CA-5796 TCGA-CA-5797 TCGA-CA-6715 TCGA-CA-6716 TCGA-CA-6717 
          NA           12            8            2            8           10 
TCGA-CA-6718 TCGA-CA-6719 TCGA-CK-4947 TCGA-CK-4948 TCGA-CK-4950 TCGA-CK-4951 
           3           41          533         3116         1226         1491 
TCGA-CK-4952 TCGA-CK-5912 TCGA-CK-5913 TCGA-CK-5914 TCGA-CK-5915 TCGA-CK-5916 
         474         1461          853          669           NA           NA 
TCGA-CK-6746 TCGA-CK-6747 TCGA-CK-6748 TCGA-CK-6751 TCGA-CM-4743 TCGA-CM-4744 
          NA           89           61         3134          184          214 
TCGA-CM-4746 TCGA-CM-4747 TCGA-CM-4748 TCGA-CM-4750 TCGA-CM-4751 TCGA-CM-4752 
         699          244          214          244          607          123 
TCGA-CM-5341 TCGA-CM-5344 TCGA-CM-5348 TCGA-CM-5349 TCGA-CM-5860 TCGA-CM-5861 
         183          304          393          335          304          335 
TCGA-CM-5862 TCGA-CM-5863 TCGA-CM-5864 TCGA-CM-5868 TCGA-CM-6161 TCGA-CM-6162 
          NA          304           61          304          212          212 
TCGA-CM-6163 TCGA-CM-6164 TCGA-CM-6165 TCGA-CM-6166 TCGA-CM-6167 TCGA-CM-6168 
          90          487          212          424          122          181 
TCGA-CM-6169 TCGA-CM-6170 TCGA-CM-6171 TCGA-CM-6172 TCGA-CM-6674 TCGA-CM-6675 
         243          242          181          211          149          152 
TCGA-CM-6676 TCGA-CM-6677 TCGA-CM-6678 TCGA-CM-6679 TCGA-CM-6680 TCGA-D5-5537 
         152          152          122          122           91          456 
TCGA-D5-5538 TCGA-D5-5539 TCGA-D5-5540 TCGA-D5-5541 TCGA-D5-6529 TCGA-D5-6530 
         204           30          198          202          260          271 
TCGA-D5-6531 TCGA-D5-6532 TCGA-D5-6533 TCGA-D5-6534 TCGA-D5-6535 TCGA-D5-6536 
          17          107           40          241           10          287 
TCGA-D5-6537 TCGA-D5-6538 TCGA-D5-6539 TCGA-D5-6540 TCGA-D5-6541 TCGA-D5-6898 
         136          246          144          186          108           45 
TCGA-D5-6920 TCGA-D5-6922 TCGA-D5-6923 TCGA-D5-6924 TCGA-D5-6926 TCGA-D5-6927 
         111          133           42           88           95           67 
TCGA-D5-6928 TCGA-D5-6929 TCGA-D5-6930 TCGA-D5-6931 TCGA-D5-6932 TCGA-D5-7000 
          20          145           45           43           19           41 
TCGA-DM-A0X9 TCGA-DM-A0XD TCGA-DM-A0XF TCGA-DM-A1D0 TCGA-DM-A1D4 TCGA-DM-A1D6 
        3429          743         1162         3621         2821         1518 
TCGA-DM-A1D7 TCGA-DM-A1D8 TCGA-DM-A1D9 TCGA-DM-A1DA TCGA-DM-A1DB TCGA-DM-A1HA 
          NA          383         3927          227         1348         3927 
TCGA-DM-A1HB TCGA-DM-A280 TCGA-DM-A282 TCGA-DM-A285 TCGA-DM-A288 TCGA-DM-A28A 
        3774          235         4122          185          426          805 
TCGA-DM-A28C TCGA-DM-A28E TCGA-DM-A28F TCGA-DM-A28G TCGA-DM-A28H TCGA-DM-A28K 
        2475         3529         1094         1849         3422         2835 
TCGA-DM-A28M TCGA-F4-6459 TCGA-F4-6460 TCGA-F4-6461 TCGA-F4-6463 TCGA-F4-6569 
        2774           NA           NA           NA           NA           NA 
TCGA-F4-6570 TCGA-F4-6703 TCGA-F4-6704 TCGA-F4-6805 TCGA-F4-6806 TCGA-F4-6807 
          NA           56           46           16           20           16 
TCGA-F4-6808 TCGA-F4-6809 TCGA-F4-6854 TCGA-F4-6855 TCGA-F4-6856 TCGA-G4-6293 
          14           38           16           42           20         3203 
TCGA-G4-6294 TCGA-G4-6295 TCGA-G4-6297 TCGA-G4-6298 TCGA-G4-6299 TCGA-G4-6302 
         858          254         2288           NA         2077         1309 
TCGA-G4-6303 TCGA-G4-6304 TCGA-G4-6306 TCGA-G4-6307 TCGA-G4-6309 TCGA-G4-6310 
        1882         1631         1358         1485         1386         1204 
TCGA-G4-6311 TCGA-G4-6314 TCGA-G4-6315 TCGA-G4-6317 TCGA-G4-6320 TCGA-G4-6321 
        1112         1031          937          893          678          571 
TCGA-G4-6322 TCGA-G4-6323 TCGA-G4-6586 TCGA-G4-6588 TCGA-G4-6625 TCGA-G4-6626 
         546          201          741          644         2672           NA 
TCGA-G4-6627 TCGA-G4-6628 TCGA-AF-2687 TCGA-AF-2689 TCGA-AF-2690 TCGA-AF-2691 
        1434         1611          594          482          358          323 
TCGA-AF-2692 TCGA-AF-2693 TCGA-AF-3400 TCGA-AF-3911 TCGA-AF-3913 TCGA-AF-4110 
         412          581          387          536          316          441 
TCGA-AF-6136 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-3574 TCGA-AG-3575 TCGA-AG-3578 
         231          193          223           NA           NA           NA 
TCGA-AG-3580 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3584 TCGA-AG-3586 
          NA           31           31           61           NA           NA 
TCGA-AG-3587 TCGA-AG-3591 TCGA-AG-3592 TCGA-AG-3593 TCGA-AG-3594 TCGA-AG-3598 
          31           NA           NA           NA           NA           NA 
TCGA-AG-3599 TCGA-AG-3600 TCGA-AG-3601 TCGA-AG-3602 TCGA-AG-3605 TCGA-AG-3608 
          30           NA           NA           NA           NA           NA 
TCGA-AG-3609 TCGA-AG-3611 TCGA-AG-3612 TCGA-AG-3725 TCGA-AG-3726 TCGA-AG-3727 
          NA           NA           NA           NA           31           29 
TCGA-AG-3728 TCGA-AG-3731 TCGA-AG-3732 TCGA-AG-3742 TCGA-AG-3878 TCGA-AG-3881 
          NA           31           NA           30           30           NA 
TCGA-AG-3882 TCGA-AG-3883 TCGA-AG-3885 TCGA-AG-3887 TCGA-AG-3890 TCGA-AG-3892 
          NA           NA           NA           28           NA           31 
TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3896 TCGA-AG-3898 TCGA-AG-3901 TCGA-AG-3902 
          30           30           NA           NA           NA           NA 
TCGA-AG-3909 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4005 TCGA-AG-4007 TCGA-AG-4008 
          NA           31           31           NA           31           31 
TCGA-AG-4015 TCGA-AG-4021 TCGA-AG-4022 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
          NA           NA           30          637          423          183 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 
         789          700          518          484          396           31 
TCGA-AG-A01J TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 
          31          365          365         2130         1946          334 
TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A02N TCGA-AG-A02X 
        1581         1519           59         1184         1884         1246 
TCGA-AG-A032 TCGA-AG-A036 TCGA-AH-6544 TCGA-AH-6547 TCGA-AH-6549 TCGA-AH-6643 
        1156         2192           15           44            6           21 
TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6620 
          22          140           55          310          183          183 
TCGA-CI-6621 TCGA-CI-6622 TCGA-CI-6623 TCGA-CI-6624 TCGA-CL-4957 TCGA-CL-5917 
          NA          211          285          143          425         1825 
TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 TCGA-DC-5869 TCGA-DC-6154 
         243          334          335          304          153          273 
TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 TCGA-DC-6160 TCGA-DC-6681 
         224          212          849          212          608          180 
TCGA-DC-6682 TCGA-DC-6683 TCGA-DT-5265 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD 
         121          152            8         3635         1257         1741 
TCGA-DY-A1DE TCGA-DY-A1DF TCGA-DY-A1DG TCGA-DY-A1H8 TCGA-EF-5830 TCGA-EF-5831 
        3683          734         1566          991           15           73 
TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6508 TCGA-EI-6509 TCGA-EI-6510 TCGA-EI-6511 
         232            5           66          250           14          121 
TCGA-EI-6512 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 TCGA-EI-6882 TCGA-EI-6883 
          20          210          216          187          108          121 
TCGA-EI-6884 TCGA-EI-6885 TCGA-EI-6917 TCGA-EI-7002 TCGA-EI-7004 TCGA-F5-6464 
          83          159          237           84           62           NA 
TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6702 TCGA-F5-6810 TCGA-F5-6811 TCGA-F5-6812 
         103           26           66           12           31           20 
TCGA-F5-6813 TCGA-F5-6814 TCGA-F5-6861 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6233 
          21           16           33           23           14           NA 
TCGA-G5-6235 TCGA-G5-6572 TCGA-G5-6641 
        1451           NA          636 
Variable 1:'AGE':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=58,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=270,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=139,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'PATHOLOGY.T':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'PATHOLOGY.N':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGICSPREAD(M)':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'TUMOR.STAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'BATCH.NUMBER':	nDistinctValues=28,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "PRIMARY.SITE.OF.DISEASE"               
 [3] "GENDER"                                
 [4] "HISTOLOGICAL.TYPE"                     
 [5] "PATHOLOGY.T"                           
 [6] "PATHOLOGY.N"                           
 [7] "PATHOLOGICSPREAD(M)"                   
 [8] "TUMOR.STAGE"                           
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE" "8"           
[1] "stage2"
vv
  1   2   3   4 
 97 214 167  82 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "5"          
[1] "PATHOLOGY.N" "6"          
Output Data has 585 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=59, binary=FALSE, numeric=TRUE
PRIMARY.SITE.OF.DISEASE, nv=2, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
PATHOLOGY.T, nv=5, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T0  T1  T2  T3  T4 
  1  19 101 400  60 
[1] "table(vv)"
vv
T0+T1    T2    T3    T4 
   20   101   400    60 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T0  T1  T2  T3  T4 
  1  19 101 400  60 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


T0+T1    T2    T3    T4 
   20   101   400    60 
PATHOLOGY.N, nv=3, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2 
335 140 105 
[1] "table(vv)"
vv
 N0  N1  N2 
335 140 105 
$ClinVariableName
[1] "PATHOLOGY.N"

$Table
vv
 N0  N1  N2 
335 140 105 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


 N0  N1  N2 
335 140 105 
PATHOLOGICSPREAD(M), nv=5, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
 97 214 167  82 
[1] "table(vv)"
vv
  I  II III  IV 
 97 214 167  82 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
 97 214 167  82 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
 97 214 167  82 
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 27  9
  subtype2 24  2
  subtype3 26  2
  subtype4 22  2
subtype1 subtype2 subtype3 subtype4 
      36       26       28       24 
subtype1 subtype2 subtype3 subtype4 
       9        2        2        2 
$subtype1
TCGA-A6-2670 TCGA-A6-2677 TCGA-A6-2683 TCGA-AA-3666 TCGA-AA-3837 TCGA-AA-A00L 
       13.91        17.79        15.52         1.02         1.02        17.00 
TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00Z TCGA-AA-A017 TCGA-AA-A01C TCGA-AA-A01F 
       27.02        27.02        21.99        15.02        15.02        13.02 
TCGA-AA-A01K TCGA-AA-A02E TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W 
       13.02         2.93        39.95         2.01         5.03        40.96 
TCGA-AY-4070 TCGA-AF-2689 TCGA-AF-3913 TCGA-AG-3726 TCGA-AG-3893 TCGA-AG-3894 
       16.31        15.85        10.39         1.02         0.99         0.99 
TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A014 TCGA-AG-A016 
        1.02         1.02         1.02         1.02        15.91         1.02 
TCGA-AG-A01J TCGA-AG-A01N TCGA-AG-A023 TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 
        1.02        12.00        51.98         1.94        38.93        38.01 

$subtype2
TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-3807 TCGA-A6-3808 TCGA-A6-3809 
       16.54        17.19        14.70        10.92         9.14        10.29 
TCGA-A6-3810 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3877 
        8.09         1.02         0.99         0.99         1.02         0.99 
TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3950 TCGA-AA-3952 TCGA-AA-3966 TCGA-AA-3977 
        0.99         0.99         1.02         1.02         1.02         1.02 
TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E TCGA-AA-A00R TCGA-AA-A01D TCGA-AA-A02R 
       18.02        19.00        30.02         0.99         0.99        22.03 
TCGA-AF-3400 TCGA-AG-3878 
       12.72         0.99 

$subtype3
TCGA-A6-2678 TCGA-AA-3562 TCGA-AA-3679 TCGA-AA-3685 TCGA-AA-3818 TCGA-AA-3844 
       14.37         1.02         0.99         0.99         0.99         0.92 
TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3862 TCGA-AA-3939 TCGA-AA-3975 TCGA-AA-3986 
        0.99         0.99         1.02         0.99         0.99         0.99 
TCGA-AA-A00F TCGA-AA-A00W TCGA-AY-4071 TCGA-AF-2691 TCGA-AF-2692 TCGA-AG-3581 
       34.03        14.99         0.95        10.62        13.55         1.02 
TCGA-AG-3582 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-A00C 
        1.02         2.01         1.02         0.99         0.95         6.02 
TCGA-AG-A00Y TCGA-AG-A011 TCGA-AG-A01L TCGA-AG-A025 
       23.01        17.03        12.00        49.94 

$subtype4
TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3675 TCGA-AA-3854 TCGA-AA-3941 
        1.02         0.99         0.99         1.02         1.02         1.02 
TCGA-AA-A004 TCGA-AA-A00J TCGA-AA-A00K TCGA-AA-A00N TCGA-AA-A00U TCGA-AA-A010 
       13.94        18.02        18.02         4.01        17.00        20.98 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01Q TCGA-AA-A024 TCGA-AA-A029 TCGA-AG-3887 
       12.00        12.00         1.02        39.06        51.95         0.92 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00H TCGA-AG-A015 TCGA-AG-A02X 
        1.02        20.94        13.91        25.94        13.02        40.96 

subtype1 subtype2 subtype3 subtype4 
    0.99     0.99     0.92     0.92 
subtype1 subtype2 subtype3 subtype4 
   51.98    30.02    49.94    51.95 
subtype1 subtype2 subtype3 subtype4 
   13.02     1.02     1.02    12.51 
[1] "1.0 - 52.0 (13.0)" "1.0 - 30.0 (1.0)"  "0.9 - 49.9 (1.0)" 
[4] "0.9 - 52.0 (12.5)"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [31] "subtype2" "subtype3" "subtype4" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype4"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype4"
 [49] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
 [55] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [67] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype4" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
[103] "subtype1" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [31] "subtype2" "subtype3" "subtype4" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype4"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype4"
 [49] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
 [55] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [67] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype4" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
[103] "subtype1" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
  [7] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype4"
 [13] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
 [31] "subtype2" "subtype3" "subtype4" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype4"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype4" "subtype4"
 [49] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype4"
 [55] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [67] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [79] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
 [91] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [97] "subtype4" "subtype4" "subtype3" "subtype4" "subtype3" "subtype3"
[103] "subtype1" "subtype4" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype1" "subtype3" "subtype1" "subtype1" "subtype4" "subtype1"
D1V2, continuous
D1V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   37   26
  subtype2   41    7
  subtype3   46   25
  subtype4   30   10
        clus
vv       subtype1 subtype2 subtype3 subtype4
  COLON        37       41       46       30
  RECTUM       26        7       25       10
D1V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33   30
  subtype2   29   19
  subtype3   31   42
  subtype4   14   26
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       33       29       31       14
  MALE         30       19       42       26
D1V5, multiclass
D1V6, multiclass
D1V7, multiclass
D1V8, multiclass
D1V9, multiclass
D1V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   63
  subtype2    1   47
  subtype3    0   73
  subtype4    0   40
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        1        0        0
  YES       63       47       73       40
D1V11, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   60
  subtype2    4   44
  subtype3    1   72
  subtype4    0   40
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         3        4        1        0
  YES       60       44       72       40

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1 11  1
  subtype2 32  3
  subtype3 56 11
subtype1 subtype2 subtype3 
      12       35       67 
subtype1 subtype2 subtype3 
       1        3       11 
$subtype1
TCGA-A6-2670 TCGA-A6-2678 TCGA-A6-3807 TCGA-A6-3810 TCGA-AA-3679 TCGA-AA-3685 
       13.91        14.37        10.92         8.09         0.99         0.99 
TCGA-AA-3846 TCGA-AA-3862 TCGA-AA-3975 TCGA-AY-4071 TCGA-AG-3582 TCGA-AG-A011 
        0.99         1.02         0.99         0.95         1.02        17.03 

$subtype2
TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-3808 TCGA-A6-3809 TCGA-AA-3518 
       16.54        17.19        14.70         9.14        10.29         1.02 
TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3666 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        0.99         0.99         1.02         1.02         0.99         0.99 
TCGA-AA-3842 TCGA-AA-3854 TCGA-AA-3877 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3950 
        1.02         1.02         0.99         0.99         0.99         1.02 
TCGA-AA-3966 TCGA-AA-3977 TCGA-AA-A004 TCGA-AA-A00A TCGA-AA-A00D TCGA-AA-A00E 
        1.02         1.02        13.94        18.02        19.00        30.02 
TCGA-AA-A00J TCGA-AA-A00N TCGA-AA-A00R TCGA-AA-A01D TCGA-AA-A01Q TCGA-AA-A02R 
       18.02         4.01         0.99         0.99         1.02        22.03 
TCGA-AF-2691 TCGA-AF-3400 TCGA-AG-3587 TCGA-AG-3878 TCGA-AG-A02X 
       10.62        12.72         1.02         0.99        40.96 

$subtype3
TCGA-A6-2677 TCGA-A6-2683 TCGA-AA-3562 TCGA-AA-3675 TCGA-AA-3818 TCGA-AA-3837 
       17.79        15.52         1.02         1.02         0.99         1.02 
TCGA-AA-3844 TCGA-AA-3848 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3952 TCGA-AA-3986 
        0.92         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-A00F TCGA-AA-A00K TCGA-AA-A00L TCGA-AA-A00O TCGA-AA-A00Q TCGA-AA-A00U 
       34.03        18.02        17.00        27.02        27.02        17.00 
TCGA-AA-A00W TCGA-AA-A00Z TCGA-AA-A010 TCGA-AA-A017 TCGA-AA-A01C TCGA-AA-A01F 
       14.99        21.99        20.98        15.02        15.02        13.02 
TCGA-AA-A01G TCGA-AA-A01I TCGA-AA-A01K TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02E 
       12.00        12.00        13.02        39.06        51.95         2.93 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02J TCGA-AA-A02W TCGA-AY-4070 TCGA-AF-2689 
       39.95         2.01         5.03        40.96        16.31        15.85 
TCGA-AF-2692 TCGA-AF-3913 TCGA-AG-3581 TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3726 
       13.55        10.39         1.02         2.01         0.99         1.02 
TCGA-AG-3727 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-3894 TCGA-AG-3999 
        0.95         0.92         1.02         0.99         0.99         1.02 
TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C 
        1.02         1.02         1.02        20.94        13.91         6.02 
TCGA-AG-A00H TCGA-AG-A00Y TCGA-AG-A014 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01J 
       25.94        23.01        15.91        13.02         1.02         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       12.00        12.00        51.98        49.94         1.94        38.93 
TCGA-AG-A032 
       38.01 

subtype1 subtype2 subtype3 
    0.95     0.99     0.92 
subtype1 subtype2 subtype3 
   17.03    40.96    51.98 
subtype1 subtype2 subtype3 
    1.02     1.02    12.00 
[1] "0.9 - 17.0 (1.0)"  "1.0 - 41.0 (1.0)"  "0.9 - 52.0 (12.0)"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
  [1] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
  [7] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [61] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [67] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [73] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
D2V2, continuous
D2V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   34   12
  subtype2   51   13
  subtype3   69   43
        clus
vv       subtype1 subtype2 subtype3
  COLON        34       51       69
  RECTUM       12       13       43
D2V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   22   25
  subtype2   33   31
  subtype3   52   61
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       22       33       52
  MALE         25       31       61
D2V5, multiclass
D2V6, multiclass
D2V7, multiclass
D2V8, multiclass
D2V9, multiclass
D2V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   47
  subtype2    1   63
  subtype3    0  113
     clus
vv    subtype1 subtype2 subtype3
  NO         0        1        0
  YES       47       63      113
D2V11, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   45
  subtype2    3   61
  subtype3    3  110
     clus
vv    subtype1 subtype2 subtype3
  NO         2        3        3
  YES       45       61      110

Clustering(3) Variable = METHLYATION_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1 113  18
  subtype2  86  16
  subtype3  81  10
subtype1 subtype2 subtype3 
     131      102       91 
subtype1 subtype2 subtype3 
      18       16       10 
$subtype1
TCGA-A6-2671 TCGA-A6-2675 TCGA-A6-2680 TCGA-A6-5656 TCGA-A6-5660 TCGA-A6-5662 
       21.30        16.93        17.16        15.19        11.24         9.76 
TCGA-A6-5666 TCGA-A6-5667 TCGA-A6-6137 TCGA-A6-6140 TCGA-A6-6648 TCGA-A6-6650 
        8.02        10.52         6.41         4.08         8.32         5.65 
TCGA-A6-6652 TCGA-A6-6782 TCGA-AA-3488 TCGA-AA-3494 TCGA-AA-3495 TCGA-AA-3496 
        4.41         5.39         2.99         1.02         1.02         1.02 
TCGA-AA-3660 TCGA-AA-3697 TCGA-AD-6888 TCGA-AD-6895 TCGA-AD-6899 TCGA-AD-6964 
        1.02         0.95         4.21         0.72         1.55         0.99 
TCGA-AM-5820 TCGA-AY-5543 TCGA-AZ-4308 TCGA-AZ-4681 TCGA-AZ-4682 TCGA-AZ-4684 
        0.46         7.56        56.35        71.67        22.36        56.05 
TCGA-AZ-6603 TCGA-AZ-6608 TCGA-CA-5797 TCGA-CA-6715 TCGA-CK-5912 TCGA-CK-5914 
       29.56         1.94         0.26         0.07        48.03        21.99 
TCGA-CK-6748 TCGA-CM-4750 TCGA-CM-4752 TCGA-CM-5341 TCGA-CM-5344 TCGA-CM-5862 
        2.01         8.02         4.04         6.02         9.99         5.03 
TCGA-CM-5864 TCGA-CM-5868 TCGA-CM-6161 TCGA-CM-6164 TCGA-CM-6165 TCGA-CM-6166 
        2.01         9.99         6.97        16.01         6.97        13.94 
TCGA-CM-6170 TCGA-CM-6172 TCGA-CM-6676 TCGA-CM-6679 TCGA-D5-5537 TCGA-D5-5540 
        7.96         6.94         5.00         4.01        14.99         6.51 
TCGA-D5-5541 TCGA-D5-6532 TCGA-D5-6533 TCGA-D5-6534 TCGA-D5-6537 TCGA-D5-6922 
        6.64         3.52         1.32         7.92         4.47         4.37 
TCGA-DM-A0XF TCGA-DM-A1D0 TCGA-DM-A1DB TCGA-DM-A282 TCGA-DM-A28A TCGA-DM-A28C 
       38.20       119.05        44.32       135.52        26.47        81.37 
TCGA-DM-A28E TCGA-DM-A28F TCGA-F4-6808 TCGA-F4-6854 TCGA-F4-6855 TCGA-F4-6856 
      116.02        35.97         0.46         0.53         1.38         0.66 
TCGA-G4-6294 TCGA-G4-6295 TCGA-G4-6297 TCGA-G4-6298 TCGA-G4-6303 TCGA-G4-6306 
       28.21         8.35        75.22        23.51        61.87        44.65 
TCGA-G4-6307 TCGA-G4-6310 TCGA-G4-6311 TCGA-G4-6314 TCGA-G4-6315 TCGA-G4-6317 
       48.82        39.58        36.56        33.90        30.81        29.36 
TCGA-G4-6626 TCGA-AF-3911 TCGA-AF-6136 TCGA-AG-4022 TCGA-AG-A026 TCGA-AG-A036 
       46.75        17.62         7.59         0.99         1.94        72.07 
TCGA-AH-6549 TCGA-AH-6643 TCGA-AH-6644 TCGA-AH-6897 TCGA-AH-6903 TCGA-CI-6622 
        0.20         0.69         0.72         4.60         1.81         6.94 
TCGA-CL-4957 TCGA-CL-5917 TCGA-CL-5918 TCGA-DC-4745 TCGA-DC-4749 TCGA-DC-5337 
       13.97        60.00         7.99        10.98        11.01         9.99 
TCGA-DC-5869 TCGA-DC-6154 TCGA-DC-6155 TCGA-DC-6156 TCGA-DC-6157 TCGA-DC-6158 
        5.03         8.98         7.36         6.97        27.91         6.97 
TCGA-DC-6683 TCGA-DY-A0XA TCGA-DY-A1DC TCGA-DY-A1DD TCGA-DY-A1DE TCGA-DY-A1DG 
        5.00       119.51        41.33        57.24       121.08        51.48 
TCGA-DY-A1H8 TCGA-EF-5831 TCGA-EI-6511 TCGA-EI-6513 TCGA-EI-6514 TCGA-EI-6881 
       32.58         2.40         3.98         6.90         7.10         6.15 
TCGA-EI-6883 TCGA-EI-6885 TCGA-EI-7002 TCGA-F5-6465 TCGA-F5-6571 TCGA-F5-6810 
        3.98         5.23         2.76         3.39         0.85         0.39 
TCGA-F5-6811 TCGA-F5-6813 TCGA-F5-6863 TCGA-F5-6864 TCGA-G5-6641 
        1.02         0.69         0.76         0.46        20.91 

$subtype2
TCGA-A6-2679 TCGA-A6-2681 TCGA-A6-2686 TCGA-A6-4105 TCGA-A6-4107 TCGA-A6-5659 
       19.56        18.15        16.04        14.50         7.59         9.40 
TCGA-A6-5661 TCGA-A6-5665 TCGA-A6-6138 TCGA-A6-6653 TCGA-A6-6780 TCGA-AA-3502 
       10.06         9.40         5.95         2.96         2.83         1.02 
TCGA-AA-3663 TCGA-AA-3713 TCGA-AD-5900 TCGA-AD-6548 TCGA-AD-6890 TCGA-AD-6901 
        1.02         0.95         0.07         0.10         0.79         1.02 
TCGA-AM-5821 TCGA-AY-6197 TCGA-AY-6386 TCGA-AZ-4614 TCGA-AZ-4615 TCGA-AZ-4616 
        0.92         3.68         5.33         5.65        16.60         5.13 
TCGA-AZ-5407 TCGA-AZ-6598 TCGA-AZ-6599 TCGA-AZ-6606 TCGA-CA-5254 TCGA-CA-5796 
       45.86        49.41         6.74        11.74         0.16         0.39 
TCGA-CA-6716 TCGA-CA-6719 TCGA-CK-4947 TCGA-CK-4950 TCGA-CK-4951 TCGA-CK-4952 
        0.26         1.35        17.52        40.31        49.02        15.58 
TCGA-CK-5913 TCGA-CK-5916 TCGA-CK-6747 TCGA-CK-6751 TCGA-CM-4744 TCGA-CM-4746 
       28.04        21.01         2.93       103.04         7.04        22.98 
TCGA-CM-4747 TCGA-CM-4751 TCGA-CM-5860 TCGA-CM-5861 TCGA-CM-6169 TCGA-CM-6171 
        8.02        19.96         9.99        11.01         7.99         5.95 
TCGA-CM-6675 TCGA-CM-6677 TCGA-CM-6680 TCGA-D5-5538 TCGA-D5-5539 TCGA-D5-6531 
        5.00         5.00         2.99         6.71         0.99         0.56 
TCGA-D5-6535 TCGA-D5-6538 TCGA-D5-6540 TCGA-D5-6920 TCGA-D5-6923 TCGA-D5-6927 
        0.33         8.09         6.12         3.65         1.38         2.20 
TCGA-D5-6929 TCGA-D5-6931 TCGA-D5-7000 TCGA-DM-A0X9 TCGA-DM-A0XD TCGA-DM-A1D4 
        4.77         1.41         1.35       112.73        24.43        92.75 
TCGA-DM-A1D8 TCGA-DM-A1D9 TCGA-DM-A1DA TCGA-DM-A1HA TCGA-DM-A1HB TCGA-DM-A285 
       12.59       129.11         7.46       129.11       124.08         6.08 
TCGA-DM-A288 TCGA-DM-A28G TCGA-DM-A28H TCGA-DM-A28K TCGA-DM-A28M TCGA-F4-6806 
       14.01        60.79       112.50        93.21        91.20         0.66 
TCGA-G4-6293 TCGA-G4-6299 TCGA-G4-6320 TCGA-G4-6321 TCGA-G4-6322 TCGA-G4-6323 
      105.30        68.28        22.29        18.77        17.95         6.61 
TCGA-G4-6586 TCGA-G4-6588 TCGA-G4-6628 TCGA-AG-3731 TCGA-AG-3742 TCGA-AG-A01W 
       24.36        21.17        52.96         1.02         0.99        70.03 
TCGA-AG-A020 TCGA-AG-A02N TCGA-CI-6620 TCGA-DT-5265 TCGA-DY-A1DF TCGA-EF-5830 
       10.98        61.94         6.02         0.26        24.13         0.49 
TCGA-EI-6508 TCGA-EI-6510 TCGA-EI-6512 TCGA-EI-6882 TCGA-F5-6814 TCGA-G5-6233 
        2.17         0.46         0.66         3.55         0.53        18.25 

$subtype3
TCGA-A6-2682 TCGA-A6-2684 TCGA-A6-2685 TCGA-A6-5657 TCGA-A6-5664 TCGA-A6-6141 
       13.94        12.72        15.25        12.07        11.90         4.24 
TCGA-A6-6142 TCGA-A6-6649 TCGA-A6-6651 TCGA-A6-6654 TCGA-A6-6781 TCGA-AA-3489 
        4.37         4.80         8.15         5.82         5.19         1.02 
TCGA-AA-3510 TCGA-AD-6889 TCGA-AD-6963 TCGA-AD-6965 TCGA-AU-6004 TCGA-AY-6196 
        1.02        56.52         0.10         0.20         1.32         0.20 
TCGA-AZ-4313 TCGA-AZ-4315 TCGA-AZ-4323 TCGA-AZ-5403 TCGA-AZ-6600 TCGA-AZ-6601 
       31.46        43.86         1.41        62.79        12.10        99.98 
TCGA-AZ-6605 TCGA-AZ-6607 TCGA-CA-5255 TCGA-CA-6717 TCGA-CA-6718 TCGA-CK-4948 
        5.23         3.19         0.07         0.33         0.10       102.44 
TCGA-CM-4743 TCGA-CM-4748 TCGA-CM-5348 TCGA-CM-5349 TCGA-CM-5863 TCGA-CM-6162 
        6.05         7.04        12.92        11.01         9.99         6.97 
TCGA-CM-6163 TCGA-CM-6167 TCGA-CM-6168 TCGA-CM-6674 TCGA-CM-6678 TCGA-D5-6529 
        2.96         4.01         5.95         4.90         4.01         8.55 
TCGA-D5-6530 TCGA-D5-6536 TCGA-D5-6539 TCGA-D5-6541 TCGA-D5-6898 TCGA-D5-6924 
        8.91         9.44         4.73         3.55         1.48         2.89 
TCGA-D5-6926 TCGA-D5-6928 TCGA-D5-6930 TCGA-D5-6932 TCGA-DM-A1D6 TCGA-DM-A280 
        3.12         0.66         1.48         0.62        49.91         7.73 
TCGA-F4-6703 TCGA-F4-6704 TCGA-F4-6805 TCGA-F4-6807 TCGA-F4-6809 TCGA-G4-6302 
        1.84         1.51         0.53         0.53         1.25        43.04 
TCGA-G4-6304 TCGA-G4-6309 TCGA-G4-6625 TCGA-G4-6627 TCGA-AF-2687 TCGA-AF-2690 
       53.62        45.57        87.85        47.15        19.53        11.77 
TCGA-AF-2693 TCGA-AF-4110 TCGA-AF-6655 TCGA-AF-6672 TCGA-AG-A01Y TCGA-AH-6544 
       19.10        14.50         6.35         7.33        63.98         0.49 
TCGA-AH-6547 TCGA-BM-6198 TCGA-CI-6619 TCGA-CI-6623 TCGA-CI-6624 TCGA-DC-6160 
        1.45        10.19         6.02         9.37         4.70        19.99 
TCGA-DC-6681 TCGA-DC-6682 TCGA-EI-6506 TCGA-EI-6507 TCGA-EI-6509 TCGA-EI-6884 
        5.92         3.98         7.63         0.16         8.22         2.73 
TCGA-EI-6917 TCGA-EI-7004 TCGA-F5-6702 TCGA-F5-6812 TCGA-F5-6861 TCGA-G5-6235 
        7.79         2.04         2.17         0.66         1.08        47.70 
TCGA-G5-6572 
       47.08 

subtype1 subtype2 subtype3 
    0.07     0.07     0.07 
subtype1 subtype2 subtype3 
  135.52   129.11   102.44 
subtype1 subtype2 subtype3 
   7.100    7.525    5.950 
[1] "0.1 - 135.5 (7.1)" "0.1 - 129.1 (7.5)" "0.1 - 102.4 (6.0)"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [31] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [43] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[253] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[265] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[283] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[289] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[295] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[301] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[307] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[313] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[319] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [31] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [43] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[253] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[265] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[283] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[289] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[295] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[301] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[307] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[313] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[319] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype1"
 [13] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
 [19] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [31] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [43] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
 [49] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [61] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[121] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[139] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[151] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[163] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[181] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[217] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[247] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[253] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[265] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[283] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[289] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[295] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[301] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[307] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[313] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[319] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
D3V2, continuous
D3V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   94   47
  subtype2   93   18
  subtype3   67   28
        clus
vv       subtype1 subtype2 subtype3
  COLON        94       93       67
  RECTUM       47       18       28
D3V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   61   80
  subtype2   60   51
  subtype3   35   62
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       61       60       35
  MALE         80       51       62
D3V5, multiclass
D3V6, multiclass
D3V7, multiclass
D3V8, multiclass
D3V9, multiclass
D3V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4  137
  subtype2    0  111
  subtype3    4   93
     clus
vv    subtype1 subtype2 subtype3
  NO         4        0        4
  YES      137      111       93
D3V11, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   28  113
  subtype2   20   91
  subtype3   26   71
     clus
vv    subtype1 subtype2 subtype3
  NO        28       20       26
  YES      113       91       71

Clustering(4) Variable = MRNASEQ_CNMF
D4V1, survival
          sevent
clus2       0  1
  subtype1  5  1
  subtype2  8  0
  subtype3 16  0
  subtype4 13  3
subtype1 subtype2 subtype3 subtype4 
       6        8       16       16 
subtype1 subtype2 subtype3 subtype4 
       1        0        0        3 
$subtype1
TCGA-AF-3400 TCGA-AF-3913 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-A00H TCGA-AG-A01Y 
       12.72        10.39         1.02         1.02        25.94        63.98 

$subtype2
TCGA-AF-2691 TCGA-AF-2692 TCGA-AG-3581 TCGA-AG-3878 TCGA-AG-3893 TCGA-AG-4008 
       10.62        13.55         1.02         0.99         0.99         1.02 
TCGA-AG-A011 TCGA-AG-A01J 
       17.03         1.02 

$subtype3
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3977 TCGA-AG-3583 TCGA-AG-3599 TCGA-AG-3887 
        0.99         1.02         1.02         2.01         0.99         0.92 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A00Y TCGA-AG-A015 
        1.02        20.94        13.91         6.02        23.01        13.02 
TCGA-AG-A01L TCGA-AG-A020 TCGA-AG-A02N TCGA-AG-A02X 
       12.00        10.98        61.94        40.96 

$subtype4
TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3894 TCGA-AG-4007 
        1.02         1.02         1.02         0.95         0.99         1.02 
TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A023 TCGA-AG-A025 
       15.91         1.02        12.00        70.03        51.98        49.94 
TCGA-AG-A026 TCGA-AG-A02G TCGA-AG-A032 TCGA-AG-A036 
        1.94        38.93        38.01        72.07 

subtype1 subtype2 subtype3 subtype4 
    1.02     0.99     0.92     0.95 
subtype1 subtype2 subtype3 subtype4 
   63.98    17.03    61.94    72.07 
subtype1 subtype2 subtype3 subtype4 
  11.555    1.020    8.500    6.970 
[1] "1.0 - 64.0 (11.6)" "1.0 - 17.0 (1.0)"  "0.9 - 61.9 (8.5)" 
[4] "0.9 - 72.1 (7.0)" 
 [1] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [7] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
[13] "subtype4" "subtype4" "subtype2" "subtype3" "subtype3" "subtype2"
[19] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
[25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype4"
[31] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype4"
[37] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[43] "subtype3" "subtype3" "subtype4" "subtype4"
 [1] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [7] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
[13] "subtype4" "subtype4" "subtype2" "subtype3" "subtype3" "subtype2"
[19] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
[25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype4"
[31] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype4"
[37] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[43] "subtype3" "subtype3" "subtype4" "subtype4"
 [1] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [7] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4" "subtype3"
[13] "subtype4" "subtype4" "subtype2" "subtype3" "subtype3" "subtype2"
[19] "subtype4" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
[25] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype4"
[31] "subtype3" "subtype4" "subtype2" "subtype3" "subtype4" "subtype4"
[37] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[43] "subtype3" "subtype3" "subtype4" "subtype4"
D4V2, continuous
D4V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   14
  subtype2    3   13
  subtype3    5   22
  subtype4    0   22
        clus
vv       subtype1 subtype2 subtype3 subtype4
  COLON         3        3        5        0
  RECTUM       14       13       22       22
D4V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    8
  subtype2    8    9
  subtype3   11   16
  subtype4   11   11
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        9        8       11       11
  MALE          8        9       16       11
D4V5, multiclass
D4V6, multiclass
D4V7, multiclass
D4V8, multiclass
D4V9, multiclass
D4V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   16
  subtype2    0   17
  subtype3    0   27
  subtype4    0   22
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        0        0        0
  YES       16       17       27       22
D4V11, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   16
  subtype2    0   17
  subtype3    0   27
  subtype4    0   22
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        0        0        0
  YES       16       17       27       22

Clustering(5) Variable = MRNASEQ_CHIERARCHICAL
D5V1, survival
          sevent
clus2       0  1
  subtype1  8  1
  subtype2 10  1
  subtype3 14  0
  subtype4 10  2
subtype1 subtype2 subtype3 subtype4 
       9       11       14       12 
subtype1 subtype2 subtype3 subtype4 
       1        1        0        2 
$subtype1
TCGA-AF-2692 TCGA-AG-3583 TCGA-AG-3726 TCGA-AG-3727 TCGA-AG-3894 TCGA-AG-A00Y 
       13.55         2.01         1.02         0.95         0.99        23.01 
TCGA-AG-A014 TCGA-AG-A016 TCGA-AG-A02G 
       15.91         1.02        38.93 

$subtype2
TCGA-AF-2691 TCGA-AG-3581 TCGA-AG-3878 TCGA-AG-3893 TCGA-AG-A011 TCGA-AG-A01J 
       10.62         1.02         0.99         0.99        17.03         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A023 TCGA-AG-A025 TCGA-AG-A032 
       12.00        12.00        51.98        49.94        38.01 

$subtype3
TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3977 TCGA-AF-3400 TCGA-AG-3599 TCGA-AG-3887 
        0.99         1.02         1.02        12.72         0.99         0.92 
TCGA-AG-3892 TCGA-AG-A002 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A015 TCGA-AG-A020 
        1.02        20.94        13.91         6.02        13.02        10.98 
TCGA-AG-A02N TCGA-AG-A02X 
       61.94        40.96 

$subtype4
TCGA-AF-3913 TCGA-AG-3582 TCGA-AG-3587 TCGA-AG-3999 TCGA-AG-4001 TCGA-AG-4007 
       10.39         1.02         1.02         1.02         1.02         1.02 
TCGA-AG-4008 TCGA-AG-A00H TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A026 TCGA-AG-A036 
        1.02        25.94        70.03        63.98         1.94        72.07 

subtype1 subtype2 subtype3 subtype4 
    0.95     0.99     0.92     1.02 
subtype1 subtype2 subtype3 subtype4 
   38.93    51.98    61.94    72.07 
subtype1 subtype2 subtype3 subtype4 
    2.01    12.00     8.50     1.48 
[1] "0.9 - 38.9 (2.0)"  "1.0 - 52.0 (12.0)" "0.9 - 61.9 (8.5)" 
[4] "1.0 - 72.1 (1.5)" 
 [1] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype4" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
[13] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype2" "subtype1"
[31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[37] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype1"
[43] "subtype3" "subtype3" "subtype2" "subtype4"
 [1] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype4" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
[13] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype2" "subtype1"
[31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[37] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype1"
[43] "subtype3" "subtype3" "subtype2" "subtype4"
 [1] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype4" "subtype2" "subtype4" "subtype1" "subtype4" "subtype3"
[13] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype3"
[25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype2" "subtype1"
[31] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[37] "subtype4" "subtype3" "subtype2" "subtype2" "subtype4" "subtype1"
[43] "subtype3" "subtype3" "subtype2" "subtype4"
D5V2, continuous
D5V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   15
  subtype2    1   15
  subtype3    7   21
  subtype4    2   20
        clus
vv       subtype1 subtype2 subtype3 subtype4
  COLON         1        1        7        2
  RECTUM       15       15       21       20
D5V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    9
  subtype2    8    8
  subtype3   14   14
  subtype4    9   13
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        8        8       14        9
  MALE          9        8       14       13
D5V5, multiclass
D5V6, multiclass
D5V7, multiclass
D5V8, multiclass
D5V9, multiclass
D5V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   17
  subtype2    0   16
  subtype3    1   27
  subtype4    0   22
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        0        1        0
  YES       17       16       27       22
D5V11, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   17
  subtype2    0   16
  subtype3    1   27
  subtype4    0   22
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         0        0        1        0
  YES       17       16       27       22

Clustering(6) Variable = MIRSEQ_CNMF
D6V1, survival
          sevent
clus2       0  1
  subtype1 24  8
  subtype2 66 10
  subtype3 31  2
subtype1 subtype2 subtype3 
      32       76       33 
subtype1 subtype2 subtype3 
       8       10        2 
$subtype1
TCGA-A6-2670 TCGA-A6-2671 TCGA-A6-2679 TCGA-A6-2681 TCGA-A6-2682 TCGA-A6-2683 
       13.91        21.30        19.56        18.15        13.94        15.52 
TCGA-A6-2684 TCGA-A6-2685 TCGA-A6-3807 TCGA-A6-4107 TCGA-AA-3818 TCGA-AA-3837 
       12.72        15.25        10.92         7.59         0.99         1.02 
TCGA-AA-3949 TCGA-AA-3952 TCGA-AA-A00O TCGA-AA-A01P TCGA-AA-A01X TCGA-AA-A02E 
        0.99         1.02        27.02        38.07        26.01         2.93 
TCGA-AA-A02F TCGA-AA-A02K TCGA-AA-A03J TCGA-AY-4071 TCGA-AZ-4308 TCGA-CM-4744 
       39.95        13.97        40.93         0.95        56.35         7.04 
TCGA-CM-4747 TCGA-CM-4748 TCGA-CM-5341 TCGA-AF-3913 TCGA-AG-3893 TCGA-AG-4001 
        8.02         7.04         6.02        10.39         0.99         1.02 
TCGA-AG-4008 TCGA-AG-A015 
        1.02        13.02 

$subtype2
TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 TCGA-A6-2678 TCGA-A6-2680 
       16.54        17.19        14.70        17.79        14.37        17.16 
TCGA-A6-2686 TCGA-AA-3488 TCGA-AA-3494 TCGA-AA-3495 TCGA-AA-3502 TCGA-AA-3510 
       16.04         2.99         1.02         1.02         1.02         1.02 
TCGA-AA-3518 TCGA-AA-3526 TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3947 
        1.02         0.99         0.99         1.02         1.02         0.99 
TCGA-AA-3966 TCGA-AA-3986 TCGA-AA-A00D TCGA-AA-A00J TCGA-AA-A00Q TCGA-AA-A00U 
        1.02         0.99        19.00        18.02        27.02        17.00 
TCGA-AA-A00W TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01R 
       14.99        20.98         0.99        13.02        12.00        35.01 
TCGA-AA-A01S TCGA-AA-A01T TCGA-AA-A01V TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 
        1.02        33.04        35.01        20.98        39.06        51.95 
TCGA-AA-A02H TCGA-AA-A02O TCGA-AA-A02R TCGA-AA-A02Y TCGA-AA-A03F TCGA-AY-4070 
        2.01         0.92        22.03        39.95        18.02        16.31 
TCGA-AZ-4313 TCGA-AZ-4315 TCGA-AZ-4614 TCGA-AZ-4615 TCGA-AZ-4681 TCGA-AZ-4682 
       31.46        43.86         5.65        16.60        71.67        22.36 
TCGA-AZ-4684 TCGA-CK-4951 TCGA-CM-4746 TCGA-CM-4750 TCGA-CM-4752 TCGA-AG-3583 
       56.05        49.02        22.98         8.02         4.04         2.01 
TCGA-AG-3587 TCGA-AG-3599 TCGA-AG-3726 TCGA-AG-3887 TCGA-AG-3892 TCGA-AG-3894 
        1.02         0.99         1.02         0.92         1.02         0.99 
TCGA-AG-3999 TCGA-AG-4007 TCGA-AG-A008 TCGA-AG-A00C TCGA-AG-A011 TCGA-AG-A016 
        1.02         1.02        13.91         6.02        17.03         1.02 
TCGA-AG-A01L TCGA-AG-A01N TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 
       12.00        12.00        70.03        63.98        10.98        49.94 
TCGA-AG-A026 TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A036 
        1.94        61.94        40.96        72.07 

$subtype3
TCGA-A6-3808 TCGA-A6-3809 TCGA-A6-3810 TCGA-AA-3675 TCGA-AA-3679 TCGA-AA-3685 
        9.14        10.29         8.09         1.02         0.99         0.99 
TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 
        1.02         0.99         0.99         1.02         0.92         0.99 
TCGA-AA-3848 TCGA-AA-3854 TCGA-AA-3862 TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 
        0.99         1.02         1.02         0.99         0.99         1.02 
TCGA-AA-3950 TCGA-AA-3975 TCGA-AA-3977 TCGA-AA-A00L TCGA-AA-A02J TCGA-AF-2689 
        1.02         0.99         1.02        17.00         5.03        15.85 
TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 TCGA-AG-3727 
       10.62        13.55        12.72         1.02         1.02         0.95 
TCGA-AG-3878 TCGA-AG-A002 TCGA-AG-A02G 
        0.99        20.94        38.93 

subtype1 subtype2 subtype3 
    0.95     0.92     0.92 
subtype1 subtype2 subtype3 
   56.35    72.07    38.93 
subtype1 subtype2 subtype3 
   11.82    14.14     1.02 
[1] "0.9 - 56.4 (11.8)" "0.9 - 72.1 (14.1)" "0.9 - 38.9 (1.0)" 
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [37] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
 [49] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[139] "subtype2" "subtype2" "subtype2"
D6V2, continuous
D6V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   40   13
  subtype2   83   31
  subtype3   63   23
        clus
vv       subtype1 subtype2 subtype3
  COLON        40       83       63
  RECTUM       13       31       23
D6V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   30   24
  subtype2   55   59
  subtype3   42   45
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       30       55       42
  MALE         24       59       45
D6V5, multiclass
D6V6, multiclass
D6V7, multiclass
D6V8, multiclass
D6V9, multiclass
D6V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   54
  subtype2    1  113
  subtype3    1   86
     clus
vv    subtype1 subtype2 subtype3
  NO         0        1        1
  YES       54      113       86
D6V11, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8   46
  subtype2    7  107
  subtype3    1   86
     clus
vv    subtype1 subtype2 subtype3
  NO         8        7        1
  YES       46      107       86

Clustering(7) Variable = MIRSEQ_CHIERARCHICAL
D7V1, survival
          sevent
clus2       0  1
  subtype1 34  2
  subtype2 87 18
subtype1 subtype2 
      36      105 
subtype1 subtype2 
       2       18 
$subtype1
TCGA-A6-3808 TCGA-A6-3809 TCGA-A6-3810 TCGA-AA-3675 TCGA-AA-3679 TCGA-AA-3685 
        9.14        10.29         8.09         1.02         0.99         0.99 
TCGA-AA-3818 TCGA-AA-3842 TCGA-AA-3844 TCGA-AA-3846 TCGA-AA-3848 TCGA-AA-3854 
        0.99         1.02         0.92         0.99         0.99         1.02 
TCGA-AA-3877 TCGA-AA-3939 TCGA-AA-3941 TCGA-AA-3977 TCGA-AA-3986 TCGA-AA-A00L 
        0.99         0.99         1.02         1.02         0.99        17.00 
TCGA-AA-A00U TCGA-AA-A01S TCGA-AA-A01V TCGA-AA-A01X TCGA-AA-A02J TCGA-CM-4750 
       17.00         1.02        35.01        26.01         5.03         8.02 
TCGA-AF-2689 TCGA-AF-2691 TCGA-AF-2692 TCGA-AF-3400 TCGA-AG-3581 TCGA-AG-3582 
       15.85        10.62        13.55        12.72         1.02         1.02 
TCGA-AG-3599 TCGA-AG-3727 TCGA-AG-3878 TCGA-AG-3894 TCGA-AG-3999 TCGA-AG-A00C 
        0.99         0.95         0.99         0.99         1.02         6.02 

$subtype2
TCGA-A6-2670 TCGA-A6-2671 TCGA-A6-2672 TCGA-A6-2674 TCGA-A6-2676 TCGA-A6-2677 
       13.91        21.30        16.54        17.19        14.70        17.79 
TCGA-A6-2678 TCGA-A6-2679 TCGA-A6-2680 TCGA-A6-2681 TCGA-A6-2682 TCGA-A6-2683 
       14.37        19.56        17.16        18.15        13.94        15.52 
TCGA-A6-2684 TCGA-A6-2685 TCGA-A6-2686 TCGA-A6-3807 TCGA-A6-4107 TCGA-AA-3488 
       12.72        15.25        16.04        10.92         7.59         2.99 
TCGA-AA-3494 TCGA-AA-3495 TCGA-AA-3502 TCGA-AA-3510 TCGA-AA-3518 TCGA-AA-3526 
        1.02         1.02         1.02         1.02         1.02         0.99 
TCGA-AA-3555 TCGA-AA-3562 TCGA-AA-3666 TCGA-AA-3710 TCGA-AA-3715 TCGA-AA-3811 
        0.99         1.02         1.02         1.02         0.99         0.99 
TCGA-AA-3837 TCGA-AA-3862 TCGA-AA-3947 TCGA-AA-3949 TCGA-AA-3950 TCGA-AA-3952 
        1.02         1.02         0.99         0.99         1.02         1.02 
TCGA-AA-3966 TCGA-AA-3975 TCGA-AA-A00D TCGA-AA-A00J TCGA-AA-A00O TCGA-AA-A00Q 
        1.02         0.99        19.00        18.02        27.02        27.02 
TCGA-AA-A00W TCGA-AA-A010 TCGA-AA-A01D TCGA-AA-A01F TCGA-AA-A01G TCGA-AA-A01P 
       14.99        20.98         0.99        13.02        12.00        38.07 
TCGA-AA-A01R TCGA-AA-A01T TCGA-AA-A01Z TCGA-AA-A024 TCGA-AA-A029 TCGA-AA-A02E 
       35.01        33.04        20.98        39.06        51.95         2.93 
TCGA-AA-A02F TCGA-AA-A02H TCGA-AA-A02K TCGA-AA-A02O TCGA-AA-A02R TCGA-AA-A02Y 
       39.95         2.01        13.97         0.92        22.03        39.95 
TCGA-AA-A03F TCGA-AA-A03J TCGA-AY-4070 TCGA-AY-4071 TCGA-AZ-4308 TCGA-AZ-4313 
       18.02        40.93        16.31         0.95        56.35        31.46 
TCGA-AZ-4315 TCGA-AZ-4614 TCGA-AZ-4615 TCGA-AZ-4681 TCGA-AZ-4682 TCGA-AZ-4684 
       43.86         5.65        16.60        71.67        22.36        56.05 
TCGA-CK-4951 TCGA-CM-4744 TCGA-CM-4746 TCGA-CM-4747 TCGA-CM-4748 TCGA-CM-4752 
       49.02         7.04        22.98         8.02         7.04         4.04 
TCGA-CM-5341 TCGA-AF-3913 TCGA-AG-3583 TCGA-AG-3587 TCGA-AG-3726 TCGA-AG-3887 
        6.02        10.39         2.01         1.02         1.02         0.92 
TCGA-AG-3892 TCGA-AG-3893 TCGA-AG-4001 TCGA-AG-4007 TCGA-AG-4008 TCGA-AG-A002 
        1.02         0.99         1.02         1.02         1.02        20.94 
TCGA-AG-A008 TCGA-AG-A011 TCGA-AG-A015 TCGA-AG-A016 TCGA-AG-A01L TCGA-AG-A01N 
       13.91        17.03        13.02         1.02        12.00        12.00 
TCGA-AG-A01W TCGA-AG-A01Y TCGA-AG-A020 TCGA-AG-A025 TCGA-AG-A026 TCGA-AG-A02G 
       70.03        63.98        10.98        49.94         1.94        38.93 
TCGA-AG-A02N TCGA-AG-A02X TCGA-AG-A036 
       61.94        40.96        72.07 

subtype1 subtype2 
    0.92     0.92 
subtype1 subtype2 
   35.01    72.07 
subtype1 subtype2 
    1.02    13.02 
[1] "0.9 - 35.0 (1.0)"  "0.9 - 72.1 (13.0)"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2"
  [1] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [67] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[115] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2"
[1] "hr=" "1.3"
D7V2, continuous
D7V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   57   22
  subtype2  129   45
        clus
vv       subtype1 subtype2
  COLON        57      129
  RECTUM       22       45
D7V4, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   43   37
  subtype2   84   91
        clus
vv       subtype1 subtype2
  FEMALE       43       84
  MALE         37       91
D7V5, multiclass
D7V6, multiclass
D7V7, multiclass
D7V8, multiclass
D7V9, multiclass
D7V10, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   79
  subtype2    1  174
     clus
vv    subtype1 subtype2
  NO         1        1
  YES       79      174
D7V11, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   78
  subtype2   14  161
     clus
vv    subtype1 subtype2
  NO         2       14
  YES       78      161
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
               "PRIMARY.SITE.OF.DISEASE" 
                                      V4 
                                "GENDER" 
                                      V5 
                     "HISTOLOGICAL.TYPE" 
                                      V6 
                           "PATHOLOGY.T" 
                                      V7 
                           "PATHOLOGY.N" 
                                      V8 
                   "PATHOLOGICSPREAD(M)" 
                                      V9 
                           "TUMOR.STAGE" 
                                     V10 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                     V11 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
