# Created: Wed Aug 29 14:14:38 EDT 2012 by cgaadm_deadline
# Job: 160040    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: MutSigPreprocess urn:lsid:broadinstitute.org:cancer.genome.analysis:00272:90
# Parameters: 
#    individual_set_id = COADREAD
#    maf1 = MutSigPreprocess1.maf1.input.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis8004689981039452412.att_MutSigPreprocess1.maf1.input.tsv
#    maf2 = 
#    maf3 = MutSigPreprocess1.maf3.input.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis2206859092680511076.att_MutSigPreprocess1.maf3.input.tsv
#    maf4 = 
#    maflabel1 = Broad
#    maflabel2 = WashU
#    maflabel3 = Baylor
#    maflabel4 = 
#    wig1 = MutSigPreprocess1.wig1.input.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis2988170356879936517.att_MutSigPreprocess1.wig1.input.tsv
#    wig2 = 
#    wig3 = MutSigPreprocess1.wig3.input.tsv   /gp/getFile.jsp?task=&file=cgaadm_deadline/Axis2538709733104991033.att_MutSigPreprocess1.wig3.input.tsv
#    wig4 = 
#    build = hg18
#    context65_dir = /xchip/cga1/lawrence/db/context65
#    build_dir = /xchip/cga1/annotation/db/ucsc/hg18
#    num_categories = 4
#    target_list = /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010_fix1.txt
#    paramfile = /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
