
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.59.3844/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.59.3844/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/GBM/1710576/1.GDAC_mergedClustering.Finished/GBM.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/GBM/1669668/1.GDAC_clinicalDataPicker.Finished/GBM.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=565, in cluster file=543, common to both=527
[1]   5 527
[1] "MRNA_CNMF"
[1] 3
  1   2   3 
177 172 170 
  1   2   3 
177 172 170 
[1] "MRNA_CHIERARCHICAL"
[1] 3
  1   2   3 
223 127 169 
  1   2   3 
223 127 169 
[1] "MIR_CNMF"
[1] 3
  1   2   3   4 
144 159  74 105 
  1   2   3   4 
144 159  74 105 
[1] "MIR_CHIERARCHICAL"
[1] 3
  1   2   3 
170 180 132 
  1   2   3 
170 180 132 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
 79 123  78 
  1   2   3 
 79 123  78 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "KARNOFSKYPERFORMANCESCORE"             
[10] "HISTOLOGICALTYPE"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "NEOADJUVANTTHERAPY"                    
[13] "BATCHNUMBER"                           

Input Data has 13 rows and 527 columns.

[1] "Batch" "13"   
[1] "Last Follow UP"
TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
         278          144          345          558          705          322 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
        1077          630         2511          627         1699         2361 
TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
         612         1614         1300          748          315         2755 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
          86          430          109          326          320          556 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
         208          447           97          458          383          199 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
          76          604          254          291          183          600 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
         804          873          762          167          310          634 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
         828         2729          691            7         1560          268 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
        1757          515          106          821         1977          355 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
         537          704         2817         3040          476         1489 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
         503          514          538          327          440          121 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
         422          432          485          372          300          234 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
         323            5          484          782          133          764 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0439 
         322          377          441          321         1433           20 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
         345          281          492          102          511          393 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 TCGA-06-0125 
         465          469          492            8          123         1439 
TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
           3          108          691          988          320          570 
TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0141 TCGA-06-0143 
         428          701          674          327          280          357 
TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 TCGA-06-0148 TCGA-06-0149 TCGA-06-0152 
          71          611          508          298          238          359 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0156 TCGA-06-0157 TCGA-06-0158 TCGA-06-0162 
         389          263          164           97          166           78 
TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 
        1729          161          579           95          396            7 
TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 
          67           83         1561           60         1642          578 
TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 
          77         1228         1126          801          866          454 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 
         313          556          142          214           79           12 
TCGA-06-0206 TCGA-06-0208 TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
         196          166          151          360            6          378 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 
         684           10          548          314          359          455 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 
         313          168            8         2145          142          245 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
           5         1065          375           98          136          293 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
          62          717          285          678          594          163 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
          82           65           28          279          271          204 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 
         218          699          178          165          637          226 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
         193          109          815          263          239          413 
TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
         127           33           23          149          282           86 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 
         259          181          207          182          133           13 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
         285          341          107          254          138          268 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5416 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 
         273          260          204          155           83          114 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-08-0244 
         186          138          236          163           44          690 
TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 TCGA-08-0346 TCGA-08-0347 
        1057          119         3310           53          132          419 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0353 
         316          231          103         1636           39          195 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
         458          685          447         1084          593           29 
TCGA-08-0360 TCGA-08-0373 TCGA-08-0375 TCGA-08-0380 TCGA-08-0385 TCGA-08-0386 
         352          134          279          330           31          478 
TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0511 
          97          322            9           17          106          235 
TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 
         358          259          561         1770           39          326 
TCGA-08-0521 TCGA-08-0522 TCGA-08-0524 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
         146          555          198          486          526          168 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 
         438           49          316          181          218         2004 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 
           3         1161          790          734          185           80 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
         550           NA          378         1615         1311          167 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 
         277          451          434         2790          753          562 
TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 
         323          715          845         1179          271          626 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 
        3880          177          189          929          658          364 
TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 
         346          482          277          442          121          103 
TCGA-12-1597 TCGA-12-1598 TCGA-12-1599 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 
         427          287          769          414          194         1807 
TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 
        1314          784          351          333          358         1050 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
         357          398           98           61          459           29 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 
         188          701           68          342          418           99 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 
          41          164          502          801           62          879 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1451 
         485          587           34          114          974          703 
TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
         216           35          917           28         1245          186 
TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1823 TCGA-14-1825 
         378           30           59          540          542          232 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-14-3476 TCGA-14-3477 
         179          217          532          242           12          114 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
         103          300          581         1618          167          119 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 
         302          793          496          130          882           25 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 
         301          406          111          556          425          195 
TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 
         358          665          262           13          434          103 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
         327          276          181          394          141          772 
TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 TCGA-19-1788 TCGA-19-1789 TCGA-19-1790 
         106          217          385          111           99          153 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 
           4          294          148           33          229            5 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
         124          501          213          136          202          343 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
         244          567          242           54          198          164 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 
         161          165          305          422          296          953 
TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
         216          285          286          452          167          269 
TCGA-26-5136 TCGA-26-5139 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
          37           48          146          504           NA          555 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
        1008          648          914          427          350          752 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
         316          316          489          231           87          438 
TCGA-27-2528 TCGA-28-1745 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 
         479          344            6           77          279          253 
TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 TCGA-28-1757 
         231          257           36           46           86            4 
TCGA-28-1760 TCGA-28-2499 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 TCGA-28-2512 
         143           94           20          205          145          343 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
         222          160          119          275          473           77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
         298          432          237          415          128          259 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1977 
         319          165          467          641           15            3 
TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 
         482          593           36          142          386          451 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2616 
         515          372          632          456          485          223 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
         269          270          224          400          338          112 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
         383          356          330          165           26          406 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
         272          290           30          135          183            6 
TCGA-41-5651 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
         351          145          138          535           94          111 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
         278         1458           77          328          507          100 
TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-81-5910 TCGA-87-5896 
          82          519          253           49            2 
Variable 1:'AGE':	nDistinctValues=72,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=329,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=388,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=23,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'BATCH.NUMBER':	nDistinctValues=16,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "RADIATIONS.RADIATION.REGIMENINDICATION"
[5] "NEOADJUVANT.THERAPY"                   
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 527 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=72, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2        0   1
  subtype1  32 145
  subtype2  43 129
  subtype3  41 129
subtype1 subtype2 subtype3 
     177      172      170 
subtype1 subtype2 subtype3 
     145      129      129 
$subtype1
TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        11.34        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0021 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 
       20.71        20.61        77.62        53.06        42.74        10.36 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
       90.58         2.83        14.14        10.72        10.52        18.28 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 
        6.84        14.70        15.06        12.59         6.54        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0075 TCGA-02-0079 
        8.35         9.57         6.02        19.73        20.84        27.22 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0089 TCGA-02-0099 TCGA-02-0106 TCGA-02-0107 
       51.29         8.81        16.93         3.48        11.67        17.65 
TCGA-02-0111 TCGA-02-0116 TCGA-02-0330 TCGA-02-0337 TCGA-02-0451 TCGA-02-0456 
       23.15        48.95        15.91        25.12        16.18         3.35 
TCGA-02-2470 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 TCGA-06-0130 TCGA-06-0139 
       12.92        16.18         0.26         4.04        10.52        10.75 
TCGA-06-0141 TCGA-06-0143 TCGA-06-0147 TCGA-06-0149 TCGA-06-0155 TCGA-06-0156 
        9.21        11.74        16.70         7.82         8.65         5.39 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0168 TCGA-06-0169 TCGA-06-0175 TCGA-06-0176 
        2.56        56.84        19.04         3.12         2.73        51.32 
TCGA-06-0179 TCGA-06-0184 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       19.00        40.37        14.93        10.29        18.28         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0210 TCGA-06-0213 TCGA-06-0397 
        2.60         0.39         6.44         4.96         0.20         5.52 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0644 TCGA-06-0645 TCGA-06-0649 TCGA-06-0650 
       70.52         8.05        12.33         3.22         2.04        23.57 
TCGA-06-0750 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
        0.92         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1800 TCGA-06-1802 TCGA-06-2567 TCGA-06-5410 TCGA-06-5412 TCGA-06-5858 
       26.79         7.86         4.37         3.52         4.54         6.12 
TCGA-08-0345 TCGA-08-0346 TCGA-08-0352 TCGA-08-0360 TCGA-08-0373 TCGA-08-0380 
        1.74         4.34         1.28        11.57         4.41        10.85 
TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0522 
       10.59         0.30         0.56         3.48        11.77        18.25 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       10.39         5.95         7.17        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0822 TCGA-12-0829 TCGA-12-1088 TCGA-12-1092 
        9.11        14.83        23.51        20.58       127.56        21.63 
TCGA-12-1093 TCGA-12-1095 TCGA-12-1096 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 
       11.97        15.85         9.11        15.09         0.95         6.18 
TCGA-14-0789 TCGA-14-0812 TCGA-14-0817 TCGA-14-0867 TCGA-14-1037 TCGA-14-1396 
       11.24         3.25         5.39         2.04        19.30         1.12 
TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-16-1045 TCGA-16-1055 TCGA-16-1060 
       17.82         7.13        17.49        29.00         9.90         3.65 
TCGA-19-1385 TCGA-19-1389 TCGA-19-1787 TCGA-19-1790 TCGA-19-2623 TCGA-19-5947 
       10.75         4.64        12.66         5.03         7.53         6.64 
TCGA-19-5955 TCGA-26-1438 TCGA-26-5136 TCGA-26-5139 TCGA-27-1830 TCGA-27-1832 
        1.78        10.03         1.22         1.58         4.80         9.86 
TCGA-27-2519 TCGA-27-2524 TCGA-27-2527 TCGA-28-1745 TCGA-28-1750 TCGA-28-1751 
       10.39         7.59        14.40        11.31         8.32         7.59 
TCGA-28-1752 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-5207 TCGA-28-5208 
        8.45         0.66         4.77         7.30         9.04        15.55 
TCGA-28-5209 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
        2.53         9.80        14.20         7.79        13.64         4.21 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 
        4.67        12.69        14.83        12.23        20.78        15.95 
TCGA-32-2632 TCGA-32-4209 TCGA-32-4211 TCGA-32-4213 TCGA-41-3393 TCGA-41-3915 
        8.84        11.11        12.59        11.70         4.44         6.02 
TCGA-41-4097 TCGA-76-6193 TCGA-76-6282 
        0.20         2.70        17.06 

$subtype2
TCGA-02-0014 TCGA-02-0026 TCGA-02-0048 TCGA-02-0069 TCGA-02-0074 TCGA-02-0080 
       82.55        24.59         3.19        28.70        10.19        89.72 
TCGA-02-0084 TCGA-02-0087 TCGA-02-0104 TCGA-02-0114 TCGA-02-0258 TCGA-02-0281 
        0.23        57.76        65.00        99.95        16.54         3.98 
TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 TCGA-02-0338 
        9.86         7.69        10.62         0.16        25.71        10.59 
TCGA-02-0339 TCGA-02-0432 TCGA-02-0439 TCGA-02-0440 TCGA-02-0446 TCGA-02-2466 
       12.39        47.11         0.66        11.34         9.24        16.80 
TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 
       15.29        22.72        32.48        18.74        14.07        22.16 
TCGA-06-0146 TCGA-06-0166 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0177 
       20.09         5.29        13.02         0.23         2.20         1.97 
TCGA-06-0178 TCGA-06-0188 TCGA-06-0195 TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 
       53.98        28.47         7.04        12.43         0.33        18.02 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 
       10.32        11.80        14.96         4.67         0.16        35.01 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0686 TCGA-06-0745 TCGA-06-0749 TCGA-06-0875 
        4.47         9.63         9.37         5.36         2.14         9.17 
TCGA-06-1087 TCGA-06-1801 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        3.58         8.65         4.18         1.08         0.76         4.90 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5411 TCGA-06-5413 TCGA-06-5416 TCGA-06-5417 
        0.43         9.37         8.35         8.81         6.71         5.10 
TCGA-06-5859 TCGA-06-6389 TCGA-06-6391 TCGA-08-0245 TCGA-08-0344 TCGA-08-0347 
        4.54         7.76         1.45        34.75       108.82        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0359 TCGA-08-0385 
       10.39         7.59         3.39        53.79         0.95         1.02 
TCGA-08-0389 TCGA-08-0517 TCGA-08-0524 TCGA-12-0616 TCGA-12-0618 TCGA-12-0670 
        3.19        58.19         6.51        14.40         1.61        25.97 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0821 TCGA-12-0827 TCGA-12-1089 TCGA-12-1097 
       91.73        24.76        10.62        38.76         5.82        14.53 
TCGA-12-1099 TCGA-12-1597 TCGA-12-1598 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
        3.39        14.04         9.44         6.38        59.41        43.20 
TCGA-12-3650 TCGA-12-3651 TCGA-12-5301 TCGA-14-0813 TCGA-14-0865 TCGA-14-0871 
       10.95        11.77         2.01         1.35        16.50        28.90 
TCGA-14-1401 TCGA-14-1451 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        3.75        23.11        30.15         0.92        40.93         6.12 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-3476 
        0.99         1.94        17.75         7.63         5.88         0.39 
TCGA-14-3477 TCGA-14-4157 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
        3.75         3.39        53.19         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 
       26.07        16.31         4.27         6.41        21.86         8.61 
TCGA-19-0963 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 TCGA-19-1788 
       14.27         5.95        12.95        25.38         3.48         3.65 
TCGA-19-2624 TCGA-19-2629 TCGA-19-5956 TCGA-19-5960 TCGA-26-1442 TCGA-26-1799 
        0.16        16.47         6.51         5.42        31.33         9.37 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 
       14.86         5.49         8.84        33.14        30.05        14.04 
TCGA-27-2518 TCGA-27-2521 TCGA-28-1746 TCGA-28-1747 TCGA-28-1753 TCGA-28-1756 
       24.72        10.39         0.20         2.53         1.18         2.83 
TCGA-28-2506 TCGA-28-2514 TCGA-28-5204 TCGA-32-1973 TCGA-32-1976 TCGA-32-1980 
        6.74         5.26         3.91        21.07         0.49         1.18 
TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 
        8.88        13.15         3.68         5.42         0.85         8.94 
TCGA-41-2575 TCGA-41-5651 TCGA-76-4925 TCGA-76-4929 TCGA-76-4932 TCGA-76-4934 
        9.53        11.54         4.77         3.65        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6285 
       10.78        16.67         3.29         8.32 

$subtype3
TCGA-02-0016 TCGA-02-0023 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0083 
       55.86        20.12        26.43        25.05         5.49        22.72 
TCGA-02-0102 TCGA-02-0113 TCGA-02-0115 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 
       26.99        92.61        15.65        16.90        17.69        10.75 
TCGA-02-0271 TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0333 
       14.47        13.87        14.20        15.95        12.23         4.37 
TCGA-02-0422 TCGA-02-0430 TCGA-02-2485 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
       14.50        10.55        15.42        47.31         0.10         3.55 
TCGA-06-0137 TCGA-06-0145 TCGA-06-0148 TCGA-06-0152 TCGA-06-0154 TCGA-06-0157 
       23.05         2.33         9.80        11.80        12.79         3.19 
TCGA-06-0158 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0208 TCGA-06-0211 
        5.46         2.53        37.02        26.33         5.46        11.84 
TCGA-06-0216 TCGA-06-0394 TCGA-06-0402 TCGA-06-0743 TCGA-06-0744 TCGA-06-0747 
       22.49        10.29         0.26        22.29        19.53         2.70 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-1804 TCGA-06-2561 
        8.91         6.71         7.17        22.98        13.58         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-5408 
        2.83         8.52         5.95         6.81         5.98        11.21 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 TCGA-06-6390 TCGA-08-0244 
        8.98         8.55         2.73         3.75         5.36        22.68 
TCGA-08-0246 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
        3.91         6.41        15.06        22.52        14.70        35.64 
TCGA-08-0358 TCGA-08-0375 TCGA-08-0386 TCGA-08-0511 TCGA-08-0514 TCGA-08-0516 
       19.50         9.17        15.72         7.73         8.52        18.44 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 
        1.28        10.72         4.80        15.98        17.29         5.52 
TCGA-12-0656 TCGA-12-0657 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 
       65.88         0.10        24.13         2.63        18.08        28.37 
TCGA-12-0780 TCGA-12-0820 TCGA-12-0826 TCGA-12-0828 TCGA-12-1090 TCGA-12-1091 
       14.27        18.48        27.78         8.91         6.21        30.54 
TCGA-12-1094 TCGA-12-1098 TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 
       11.38         3.98        25.28        13.61        25.78        11.54 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0786 TCGA-14-0787 
       34.52        11.74        13.08         3.22        23.05         2.24 
TCGA-14-0790 TCGA-14-0866 TCGA-14-1034 TCGA-14-1402 TCGA-14-1452 TCGA-14-1453 
       13.74        26.33        15.95        32.02         7.10         1.15 
TCGA-14-1459 TCGA-14-2555 TCGA-15-0742 TCGA-15-1446 TCGA-16-1047 TCGA-16-1056 
       12.43         7.96         9.86        19.10         0.82        13.35 
TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 TCGA-19-0962 TCGA-19-0964 TCGA-19-1386 
       18.28        13.97        11.77         0.43         3.39         9.07 
TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        7.13         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2625 TCGA-19-2631 TCGA-19-4068 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        4.08         7.00         4.47        11.28         8.02        18.64 
TCGA-19-5954 TCGA-19-5958 TCGA-19-5959 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 
        7.96         5.39         5.29        13.87         9.73         7.10 
TCGA-26-5132 TCGA-27-1831 TCGA-27-1833 TCGA-27-1835 TCGA-27-1838 TCGA-27-2523 
        9.40        16.57        18.25        21.30        11.51        16.08 
TCGA-27-2526 TCGA-27-2528 TCGA-28-1749 TCGA-28-1755 TCGA-28-1757 TCGA-28-1760 
        2.86        15.75         9.17         1.51         0.13         4.70 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1978 
        8.52        10.49         5.42        15.35         0.10        15.85 
TCGA-32-1979 TCGA-32-1991 TCGA-32-2495 TCGA-32-2616 TCGA-32-2638 TCGA-32-4719 
       19.50        16.93        14.99         7.33         7.36        10.85 
TCGA-41-2572 TCGA-41-3392 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4931 
       13.35         0.99         4.54        17.59         3.09         9.14 
TCGA-81-5910 TCGA-87-5896 
        1.61         0.07 

subtype1 subtype2 subtype3 
    0.20     0.16     0.07 
subtype1 subtype2 subtype3 
  127.56   108.82    92.61 
subtype1 subtype2 subtype3 
  10.030    9.205   10.735 
[1] "0.2 - 127.6 (10.0)" "0.2 - 108.8 (9.2)"  "0.1 - 92.6 (10.7)" 
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[289] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[295] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[319] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[331] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[337] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[349] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[355] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[373] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[379] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[385] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[391] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[397] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[409] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[421] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[433] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[439] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[445] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[451] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[457] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[475] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[481] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[487] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[493] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[499] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[505] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[511] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[517] "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[289] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[295] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[319] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[331] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[337] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[349] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[355] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[373] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[379] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[385] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[391] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[397] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[409] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[421] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[433] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[439] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[445] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[451] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[457] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[475] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[481] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[487] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[493] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[499] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[505] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[511] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[517] "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [43] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
[157] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[163] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[169] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[187] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[211] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[241] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[259] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[265] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[271] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[289] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[295] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[307] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[313] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[319] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[325] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[331] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[337] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[349] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[355] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[367] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[373] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[379] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[385] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[391] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[397] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[409] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[421] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[433] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[439] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[445] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[451] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[457] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[475] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[481] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[487] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[493] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[499] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[505] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[511] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[517] "subtype2" "subtype3" "subtype3"
D1V2, continuous
D1V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   70  107
  subtype2   62  110
  subtype3   72   98
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       70       62       72
  MALE        107      110       98
D1V4, continuous
D1V5, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  119   58
  subtype2  108   64
  subtype3  121   49
     clus
vv    subtype1 subtype2 subtype3
  NO       119      108      121
  YES       58       64       49
D1V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   94   83
  subtype2   86   86
  subtype3   90   80
     clus
vv    subtype1 subtype2 subtype3
  NO        94       86       90
  YES       83       86       80

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2        0   1
  subtype1  41 182
  subtype2  33  94
  subtype3  42 127
subtype1 subtype2 subtype3 
     223      127      169 
subtype1 subtype2 subtype3 
     182       94      127 
$subtype1
TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        11.34        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0021 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 
       20.71        20.61        77.62        53.06        42.74        10.36 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
       90.58         2.83        14.14        10.72        10.52        18.28 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 
        6.84        14.70        15.06        12.59         6.54        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0086 TCGA-02-0099 TCGA-02-0102 
        5.49        20.84        27.22         8.81         3.48        26.99 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0116 TCGA-02-0266 TCGA-02-0271 
       11.67        17.65        23.15        48.95        17.69        14.47 
TCGA-02-0285 TCGA-02-0330 TCGA-02-0337 TCGA-02-0456 TCGA-02-2486 TCGA-06-0122 
       13.87        15.91        25.12         3.35        16.18         0.26 
TCGA-06-0124 TCGA-06-0130 TCGA-06-0137 TCGA-06-0139 TCGA-06-0141 TCGA-06-0143 
        4.04        10.52        23.05        10.75         9.21        11.74 
TCGA-06-0145 TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        2.33        16.70         7.82        11.80        12.79         8.65 
TCGA-06-0164 TCGA-06-0168 TCGA-06-0169 TCGA-06-0175 TCGA-06-0176 TCGA-06-0182 
       56.84        19.04         3.12         2.73        51.32         2.53 
TCGA-06-0184 TCGA-06-0187 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       40.37        26.33        14.93        10.29        18.28         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0210 TCGA-06-0213 TCGA-06-0394 
        2.60         0.39         6.44         4.96         0.20        10.29 
TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 TCGA-06-0644 TCGA-06-0645 TCGA-06-0649 
        5.52        70.52         8.05        12.33         3.22         2.04 
TCGA-06-0650 TCGA-06-0750 TCGA-06-0878 TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 
       23.57         0.92         7.17         5.85        20.94         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-2562 TCGA-06-2567 TCGA-06-2569 
        6.35         3.58        26.79         2.83         4.37         0.43 
TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5418 TCGA-06-5858 
        3.52         4.54         8.81         8.98         2.73         6.12 
TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 
        3.91         1.74         4.34         1.28        15.06        22.52 
TCGA-08-0356 TCGA-08-0360 TCGA-08-0373 TCGA-08-0380 TCGA-08-0390 TCGA-08-0392 
       14.70        11.57         4.41        10.85        10.59         0.30 
TCGA-08-0509 TCGA-08-0510 TCGA-08-0512 TCGA-08-0520 TCGA-08-0522 TCGA-08-0525 
        0.56         3.48        11.77        10.72        18.25        15.98 
TCGA-08-0529 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0772 TCGA-12-0773 
       17.29        10.39         5.95         7.17        53.10        43.10 
TCGA-12-0775 TCGA-12-0776 TCGA-12-0822 TCGA-12-0827 TCGA-12-0829 TCGA-12-1090 
        5.49         9.11        23.51        38.76        20.58         6.21 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1598 
       21.63        11.97        11.38        15.85         9.11         9.44 
TCGA-12-3644 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 
       59.41        13.08         3.22         2.01        15.09         0.95 
TCGA-14-0783 TCGA-14-0789 TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
        6.18        11.24         5.39         2.04        28.90        15.95 
TCGA-14-1037 TCGA-14-1396 TCGA-14-1402 TCGA-14-1452 TCGA-14-1794 TCGA-14-1823 
       19.30         1.12        32.02         7.10         0.99        17.82 
TCGA-14-1829 TCGA-14-2554 TCGA-16-1045 TCGA-16-1055 TCGA-16-1060 TCGA-19-1385 
        7.13        17.49        29.00         9.90         3.65        10.75 
TCGA-19-1389 TCGA-19-1787 TCGA-19-1790 TCGA-19-2623 TCGA-19-2625 TCGA-19-5947 
        4.64        12.66         5.03         7.53         4.08         6.64 
TCGA-19-5952 TCGA-19-5955 TCGA-26-1438 TCGA-26-1439 TCGA-26-5132 TCGA-26-5136 
       18.64         1.78        10.03        13.87         9.40         1.22 
TCGA-26-5139 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1838 
        1.58         4.80        16.57         9.86        33.14        11.51 
TCGA-27-2519 TCGA-27-2524 TCGA-27-2527 TCGA-28-1745 TCGA-28-1750 TCGA-28-1751 
       10.39         7.59        14.40        11.31         8.32         7.59 
TCGA-28-1753 TCGA-28-1760 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-5207 
        1.18         4.70         0.66         4.77         7.30         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       15.55         2.53         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-32-1973 TCGA-32-1977 TCGA-32-1979 TCGA-32-1986 
        4.21         8.52        21.07         0.10        19.50        12.69 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 
       14.83        16.93        12.23        20.78        15.95         7.33 
TCGA-32-2638 TCGA-32-4209 TCGA-32-4213 TCGA-32-4719 TCGA-41-3393 TCGA-41-3915 
        7.36        11.11        11.70        10.85         4.44         6.02 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-6193 
        4.54        17.59         3.09         3.65         9.14         2.70 
TCGA-76-6282 
       17.06 

$subtype2
TCGA-02-0016 TCGA-02-0023 TCGA-02-0048 TCGA-02-0083 TCGA-02-0113 TCGA-02-0115 
       55.86        20.12         3.19        22.72        92.61        15.65 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0333 
       16.90        10.75        14.20        15.95        12.23         4.37 
TCGA-02-0422 TCGA-02-0430 TCGA-02-2485 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 
       14.50        10.55        15.42        47.31         0.10         3.55 
TCGA-06-0148 TCGA-06-0157 TCGA-06-0158 TCGA-06-0211 TCGA-06-0216 TCGA-06-0402 
        9.80         3.19         5.46        11.84        22.49         0.26 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0876 TCGA-06-0877 
       22.29        19.53         5.36         2.70         8.91         6.71 
TCGA-06-0879 TCGA-06-1804 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
       22.98        13.58         9.27         8.52         5.95         6.81 
TCGA-06-2566 TCGA-06-5408 TCGA-06-5415 TCGA-06-5856 TCGA-06-6390 TCGA-08-0244 
        5.98        11.21         8.55         3.75         5.36        22.68 
TCGA-08-0353 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 TCGA-08-0386 TCGA-08-0511 
        6.41        35.64        19.50         9.17        15.72         7.73 
TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0521 TCGA-08-0531 TCGA-12-0656 
        8.52        18.44         1.28         4.80         5.52        65.88 
TCGA-12-0657 TCGA-12-0688 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0778 
        0.10        24.13         2.63        18.08        28.37        14.83 
TCGA-12-0780 TCGA-12-0819 TCGA-12-0821 TCGA-12-0826 TCGA-12-0828 TCGA-12-1089 
       14.27        24.76        10.62        27.78         8.91         5.82 
TCGA-12-1091 TCGA-12-1098 TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 
       30.54         3.98        25.28        13.61        25.78        11.54 
TCGA-12-3652 TCGA-12-3653 TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 TCGA-14-1453 
       34.52        11.74        23.05         2.24        13.74         1.15 
TCGA-14-1459 TCGA-14-2555 TCGA-15-0742 TCGA-15-1446 TCGA-16-1047 TCGA-16-1056 
       12.43         7.96         9.86        19.10         0.82        13.35 
TCGA-16-1062 TCGA-16-1063 TCGA-19-0955 TCGA-19-0962 TCGA-19-0964 TCGA-19-1386 
       18.28        13.97        11.77         0.43         3.39         9.07 
TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 
        7.13         3.25         0.13         9.67         4.87         1.08 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5950 TCGA-19-5951 TCGA-19-5954 TCGA-19-5958 
        7.00         4.47        11.28         8.02         7.96         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1440 TCGA-26-1443 TCGA-27-1833 TCGA-27-1835 
        5.29         5.42         9.73         7.10        18.25        21.30 
TCGA-27-1837 TCGA-27-2518 TCGA-27-2523 TCGA-27-2526 TCGA-27-2528 TCGA-28-1749 
       14.04        24.72        16.08         2.86        15.75         9.17 
TCGA-28-1755 TCGA-28-1757 TCGA-28-2506 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
        1.51         0.13         6.74        10.49         5.42        15.35 
TCGA-32-1978 TCGA-32-2495 TCGA-41-2572 TCGA-41-3392 TCGA-41-4097 TCGA-81-5910 
       15.85        14.99        13.35         0.99         0.20         1.61 
TCGA-87-5896 
        0.07 

$subtype3
TCGA-02-0014 TCGA-02-0026 TCGA-02-0069 TCGA-02-0074 TCGA-02-0080 TCGA-02-0084 
       82.55        24.59        28.70        10.19        89.72         0.23 
TCGA-02-0085 TCGA-02-0087 TCGA-02-0089 TCGA-02-0104 TCGA-02-0114 TCGA-02-0258 
       51.29        57.76        16.93        65.00        99.95        16.54 
TCGA-02-0281 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 
        3.98         9.86         7.69        10.62         0.16        25.71 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 TCGA-02-0439 TCGA-02-0440 TCGA-02-0446 
       10.59        12.39        47.11         0.66        11.34         9.24 
TCGA-02-0451 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 
       16.18        16.80        12.92        15.29        22.72        32.48 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0146 TCGA-06-0156 TCGA-06-0162 
       18.74        14.07        22.16        20.09         5.39         2.56 
TCGA-06-0166 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0177 TCGA-06-0178 
        5.29        13.02         0.23         2.20         1.97        53.98 
TCGA-06-0179 TCGA-06-0185 TCGA-06-0188 TCGA-06-0195 TCGA-06-0208 TCGA-06-0214 
       19.00        37.02        28.47         7.04         5.46        12.43 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0410 
        0.33        18.02        10.32        11.80        14.96         4.67 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0646 TCGA-06-0648 TCGA-06-0686 TCGA-06-0749 
        0.16        35.01         4.47         9.63         9.37         2.14 
TCGA-06-0875 TCGA-06-0882 TCGA-06-1801 TCGA-06-1802 TCGA-06-1805 TCGA-06-2557 
        9.17         5.42         8.65         7.86         4.18         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2570 TCGA-06-5411 TCGA-06-5416 TCGA-06-5417 
        0.76         4.90         9.37         8.35         6.71         5.10 
TCGA-06-5859 TCGA-06-6389 TCGA-06-6391 TCGA-08-0245 TCGA-08-0344 TCGA-08-0347 
        4.54         7.76         1.45        34.75       108.82        13.78 
TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 TCGA-08-0359 TCGA-08-0385 
       10.39         7.59         3.39        53.79         0.95         1.02 
TCGA-08-0389 TCGA-08-0517 TCGA-08-0524 TCGA-12-0616 TCGA-12-0618 TCGA-12-0670 
        3.19        58.19         6.51        14.40         1.61        25.97 
TCGA-12-0818 TCGA-12-0820 TCGA-12-1088 TCGA-12-1097 TCGA-12-1099 TCGA-12-1597 
       91.73        18.48       127.56        14.53         3.39        14.04 
TCGA-12-1602 TCGA-12-3646 TCGA-12-3650 TCGA-12-3651 TCGA-14-0812 TCGA-14-0813 
        6.38        43.20        10.95        11.77         3.25         1.35 
TCGA-14-0865 TCGA-14-0866 TCGA-14-1401 TCGA-14-1451 TCGA-14-1454 TCGA-14-1455 
       16.50        26.33         3.75        23.11        30.15         0.92 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 
       40.93         6.12         1.94        17.75         7.63         5.88 
TCGA-14-3476 TCGA-14-3477 TCGA-14-4157 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 
        0.39         3.75         3.39        53.19         5.49         3.91 
TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1460 TCGA-19-0957 
        9.93        26.07        16.31         4.27         6.41        21.86 
TCGA-19-0960 TCGA-19-0963 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 
        8.61        14.27         5.95        12.95        25.38         3.48 
TCGA-19-1788 TCGA-19-2624 TCGA-19-2629 TCGA-19-5956 TCGA-26-1442 TCGA-26-1799 
        3.65         0.16        16.47         6.51        31.33         9.37 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-27-1836 TCGA-27-2521 TCGA-28-1746 
       14.86         5.49         8.84        30.05        10.39         0.20 
TCGA-28-1747 TCGA-28-1752 TCGA-28-1756 TCGA-28-2514 TCGA-28-5204 TCGA-32-1976 
        2.53         8.45         2.83         5.26         3.91         0.49 
TCGA-32-1980 TCGA-32-1982 TCGA-32-2632 TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 
        1.18         4.67         8.84         8.88        13.15         3.68 
TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-5651 
       12.59         5.42         0.85         8.94         9.53        11.54 
TCGA-76-4925 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        4.77        47.93         2.53        10.78        16.67         3.29 
TCGA-76-6285 
        8.32 

subtype1 subtype2 subtype3 
    0.10     0.07     0.16 
subtype1 subtype2 subtype3 
   90.58    92.61   127.56 
subtype1 subtype2 subtype3 
   10.36     9.80     9.37 
[1] "0.1 - 90.6 (10.4)" "0.1 - 92.6 (9.8)"  "0.2 - 127.6 (9.4)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[253] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[259] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[265] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[283] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[289] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[301] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[307] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[331] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[337] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[349] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[355] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[367] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[373] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[379] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[385] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[397] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[403] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[415] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[421] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[427] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[439] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[445] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[451] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[457] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[469] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[475] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[481] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[487] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[493] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[499] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[505] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[511] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[517] "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[253] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[259] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[265] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[283] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[289] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[301] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[307] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[331] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[337] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[349] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[355] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[367] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[373] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[379] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[385] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[397] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[403] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[415] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[421] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[427] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[439] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[445] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[451] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[457] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[469] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[475] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[481] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[487] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[493] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[499] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[505] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[511] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[517] "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [43] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [73] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[145] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[169] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[175] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[181] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[211] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[217] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[223] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[229] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype2"
[241] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[247] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[253] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[259] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[265] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[283] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[289] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[295] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[301] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[307] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[331] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[337] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[349] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[355] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[367] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[373] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[379] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[385] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[397] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[403] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[409] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
[415] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[421] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[427] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[439] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[445] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[451] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[457] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[469] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[475] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[481] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[487] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[493] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[499] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[505] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[511] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[517] "subtype3" "subtype2" "subtype2"
D2V2, continuous
D2V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   90  133
  subtype2   53   74
  subtype3   61  108
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       90       53       61
  MALE        133       74      108
D2V4, continuous
D2V5, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  156   67
  subtype2   89   38
  subtype3  103   66
     clus
vv    subtype1 subtype2 subtype3
  NO       156       89      103
  YES       67       38       66
D2V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  118  105
  subtype2   69   58
  subtype3   83   86
     clus
vv    subtype1 subtype2 subtype3
  NO       118       69       83
  YES      105       58       86

Clustering(3) Variable = MIR_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1  28 116
  subtype2  35 124
  subtype3  17  57
  subtype4  23  82
subtype1 subtype2 subtype3 subtype4 
     144      159       74      105 
subtype1 subtype2 subtype3 subtype4 
     116      124       57       82 
$subtype1
TCGA-02-0001 TCGA-02-0004 TCGA-02-0006 TCGA-02-0009 TCGA-02-0015 TCGA-02-0023 
        9.14        11.34        18.35        10.59        20.61        20.12 
TCGA-02-0027 TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0051 
       10.36         2.83         3.58        10.72        10.52        15.06 
TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0070 TCGA-02-0071 
        6.54         2.50        19.86         9.57        25.05         5.49 
TCGA-02-0075 TCGA-02-0079 TCGA-02-0086 TCGA-02-0099 TCGA-02-0115 TCGA-02-0289 
       20.84        27.22         8.81         3.48        15.65        14.20 
TCGA-02-0290 TCGA-02-0324 TCGA-02-0326 TCGA-02-0422 TCGA-02-0451 TCGA-02-2486 
       15.95         7.69         0.16        14.50        16.18        16.18 
TCGA-06-0122 TCGA-06-0147 TCGA-06-0174 TCGA-06-0176 TCGA-06-0184 TCGA-06-0187 
        0.26        16.70         2.20        51.32        40.37        26.33 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0211 TCGA-06-0213 
       10.29        18.28         4.67         2.60        11.84         0.20 
TCGA-06-0214 TCGA-06-0394 TCGA-06-0397 TCGA-06-0412 TCGA-06-0644 TCGA-06-0649 
       12.43        10.29         5.52         8.05        12.33         2.04 
TCGA-06-0745 TCGA-06-0749 TCGA-06-0878 TCGA-06-1800 TCGA-06-2561 TCGA-06-2562 
        5.36         2.14         7.17        26.79         9.27         2.83 
TCGA-06-5414 TCGA-06-5418 TCGA-08-0244 TCGA-08-0246 TCGA-08-0346 TCGA-08-0352 
        8.98         2.73        22.68         3.91         4.34         1.28 
TCGA-08-0354 TCGA-08-0360 TCGA-08-0380 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 
       15.06        11.57        10.85        10.59         0.56         3.48 
TCGA-08-0511 TCGA-08-0512 TCGA-08-0514 TCGA-08-0518 TCGA-08-0521 TCGA-08-0522 
        7.73        11.77         8.52         1.28         4.80        18.25 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0657 TCGA-12-0662 TCGA-12-0776 
       15.98        17.29         5.52         0.10        38.17         9.11 
TCGA-12-0822 TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1094 TCGA-12-1095 
       23.51        27.78         8.91        20.58        11.38        15.85 
TCGA-12-1097 TCGA-12-1599 TCGA-12-3648 TCGA-12-3649 TCGA-12-3652 TCGA-12-5295 
       14.53        25.28        25.78        11.54        34.52        13.08 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0736 TCGA-14-0789 TCGA-14-1034 TCGA-14-1037 
        3.22         2.01        15.09        11.24        15.95        19.30 
TCGA-14-1452 TCGA-14-1459 TCGA-14-1823 TCGA-14-1829 TCGA-15-0742 TCGA-15-1446 
        7.10        12.43        17.82         7.13         9.86        19.10 
TCGA-16-1045 TCGA-16-1055 TCGA-16-1060 TCGA-19-0955 TCGA-19-0962 TCGA-19-1385 
       29.00         9.90         3.65        11.77         0.43        10.75 
TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-19-1790 TCGA-19-2619 TCGA-19-2621 
        9.07        12.95         4.64         5.03         9.67         1.08 
TCGA-19-2623 TCGA-26-1438 TCGA-26-1439 TCGA-26-5139 TCGA-27-1831 TCGA-27-1832 
        7.53        10.03        13.87         1.58        16.57         9.86 
TCGA-27-1834 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1745 TCGA-28-1751 
       33.14         2.86        14.40        15.75        11.31         7.59 
TCGA-28-1753 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 
        1.18         0.66         4.77         7.30         3.91        15.55 
TCGA-28-5209 TCGA-32-1987 TCGA-32-1991 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 
        2.53        14.83        16.93        15.95         7.33         8.84 
TCGA-32-2638 TCGA-32-4213 TCGA-32-4719 TCGA-41-3915 TCGA-76-4927 TCGA-76-4932 
        7.36        11.70        10.85         6.02        17.59        47.93 

$subtype2
TCGA-02-0003 TCGA-02-0007 TCGA-02-0010 TCGA-02-0014 TCGA-02-0016 TCGA-02-0026 
        4.73        23.18        35.41        82.55        55.86        24.59 
TCGA-02-0043 TCGA-02-0048 TCGA-02-0069 TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 
       18.28         3.19        28.70        10.19        89.72        22.72 
TCGA-02-0084 TCGA-02-0087 TCGA-02-0102 TCGA-02-0104 TCGA-02-0114 TCGA-02-0116 
        0.23        57.76        26.99        65.00        99.95        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0430 
       16.54        16.90        10.75        14.47         3.98        10.55 
TCGA-02-0440 TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-06-0125 TCGA-06-0128 
       11.34        16.80        15.29        15.42        47.31        22.72 
TCGA-06-0129 TCGA-06-0137 TCGA-06-0138 TCGA-06-0145 TCGA-06-0146 TCGA-06-0157 
       32.48        23.05        22.16         2.33        20.09         3.19 
TCGA-06-0158 TCGA-06-0173 TCGA-06-0178 TCGA-06-0182 TCGA-06-0185 TCGA-06-0208 
        5.46         0.23        53.98         2.53        37.02         5.46 
TCGA-06-0216 TCGA-06-0237 TCGA-06-0402 TCGA-06-0410 TCGA-06-0646 TCGA-06-0648 
       22.49        10.32         0.26         4.67         4.47         9.63 
TCGA-06-0875 TCGA-06-0879 TCGA-06-2557 TCGA-06-2559 TCGA-06-2563 TCGA-06-2565 
        9.17        22.98         1.08         4.90         8.52         6.81 
TCGA-06-2567 TCGA-06-2570 TCGA-06-5417 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        4.37         9.37         5.10        34.75       108.82         1.74 
TCGA-08-0349 TCGA-08-0350 TCGA-08-0355 TCGA-08-0357 TCGA-08-0375 TCGA-08-0385 
        7.59         3.39        22.52        35.64         9.17         1.02 
TCGA-08-0386 TCGA-08-0389 TCGA-08-0516 TCGA-08-0517 TCGA-08-0520 TCGA-12-0618 
       15.72         3.19        18.44        58.19        10.72         1.61 
TCGA-12-0619 TCGA-12-0670 TCGA-12-0691 TCGA-12-0692 TCGA-12-0707 TCGA-12-0769 
       10.39        25.97         6.08         2.63        28.37        12.43 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0820 TCGA-12-0821 TCGA-12-0827 
       53.10        43.10         5.49        18.48        10.62        38.76 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1098 TCGA-12-1598 
      127.56         5.82         6.21        30.54         3.98         9.44 
TCGA-12-1600 TCGA-12-3646 TCGA-12-3650 TCGA-12-3653 TCGA-14-0783 TCGA-14-0786 
       13.61        43.20        10.95        11.74         6.18        23.05 
TCGA-14-0787 TCGA-14-0790 TCGA-14-0817 TCGA-14-0865 TCGA-14-1453 TCGA-14-1454 
        2.24        13.74         5.39        16.50         1.15        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1821 TCGA-14-1825 TCGA-14-2554 TCGA-14-3477 
        0.92        40.93        17.75         7.63        17.49         3.75 
TCGA-14-4157 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 TCGA-16-1047 TCGA-16-1056 
        3.39         9.93        26.07        16.31         0.82        13.35 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0960 TCGA-19-0964 TCGA-19-1390 
       18.28        13.97         6.41         8.61         3.39        25.38 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2624 TCGA-19-2629 
        7.13        12.66         3.25         0.13         0.16        16.47 
TCGA-19-2631 TCGA-26-1440 TCGA-26-5133 TCGA-26-5135 TCGA-26-5136 TCGA-27-1833 
        7.00         9.73        14.86         8.84         1.22        18.25 
TCGA-27-1835 TCGA-27-1837 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-28-1746 
       21.30        14.04        10.39        10.39        16.08         0.20 
TCGA-28-1747 TCGA-28-1749 TCGA-28-2514 TCGA-28-5207 TCGA-28-5215 TCGA-28-5220 
        2.53         9.17         5.26         9.04         7.79        10.49 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-2634 TCGA-32-4208 TCGA-32-4209 
       15.35        21.07         0.49         8.88        13.15        11.11 
TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2575 TCGA-41-3393 TCGA-41-4097 
        3.68        12.59         5.42         9.53         4.44         0.20 
TCGA-76-4925 TCGA-76-4929 TCGA-76-4931 
        4.77         3.65         9.14 

$subtype3
TCGA-02-0011 TCGA-02-0024 TCGA-02-0052 TCGA-02-0058 TCGA-02-0060 TCGA-02-0085 
       20.71        53.06        12.59         8.35         6.02        51.29 
TCGA-02-0089 TCGA-02-0321 TCGA-02-0325 TCGA-02-0330 TCGA-02-0338 TCGA-02-0339 
       16.93         9.86        10.62        15.91        10.59        12.39 
TCGA-02-0439 TCGA-02-0446 TCGA-02-2470 TCGA-06-0126 TCGA-06-0162 TCGA-06-0171 
        0.66         9.24        12.92         0.10         2.56        13.02 
TCGA-06-0177 TCGA-06-0179 TCGA-06-0195 TCGA-06-0219 TCGA-06-0221 TCGA-06-0241 
        1.97        19.00         7.04         0.33        18.02        14.96 
TCGA-06-0413 TCGA-06-0414 TCGA-06-0686 TCGA-06-0747 TCGA-06-0750 TCGA-06-0882 
        0.16        35.01         9.37         2.70         0.92         5.42 
TCGA-06-0939 TCGA-06-1801 TCGA-06-2558 TCGA-06-2564 TCGA-06-2566 TCGA-06-5415 
       20.94         8.65         0.76         5.95         5.98         8.55 
TCGA-06-5416 TCGA-08-0347 TCGA-08-0348 TCGA-08-0351 TCGA-08-0359 TCGA-08-0373 
        6.71        13.78        10.39        53.79         0.95         4.41 
TCGA-12-0780 TCGA-12-1099 TCGA-12-1597 TCGA-14-0812 TCGA-14-0866 TCGA-14-0867 
       14.27         3.39        14.04         3.25        26.33         2.04 
TCGA-14-1451 TCGA-14-1458 TCGA-14-1827 TCGA-14-3476 TCGA-15-1449 TCGA-16-0846 
       23.11         6.12         5.88         0.39         5.49         3.91 
TCGA-16-0861 TCGA-19-0963 TCGA-19-1387 TCGA-19-1392 TCGA-19-1788 TCGA-19-2620 
        4.27        14.27         5.95         3.48         3.65         4.87 
TCGA-26-1799 TCGA-26-5134 TCGA-27-1836 TCGA-27-2518 TCGA-28-1752 TCGA-28-1756 
        9.37         5.49        30.05        24.72         8.45         2.83 
TCGA-28-2506 TCGA-28-5219 TCGA-32-2495 TCGA-41-2573 TCGA-41-3392 TCGA-76-4926 
        6.74         8.52        14.99         8.94         0.99         4.54 
TCGA-76-4934 TCGA-76-4935 
        2.53        10.78 

$subtype4
TCGA-02-0021 TCGA-02-0025 TCGA-02-0028 TCGA-02-0034 TCGA-02-0047 TCGA-02-0064 
       77.62        42.74        90.58        14.14        14.70        19.73 
TCGA-02-0068 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0266 
       26.43        11.67        17.65        23.15        92.61        17.69 
TCGA-02-0285 TCGA-02-0317 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0432 
       13.87        12.23        25.71         4.37        25.12        47.11 
TCGA-02-0456 TCGA-06-0124 TCGA-06-0127 TCGA-06-0130 TCGA-06-0133 TCGA-06-0139 
        3.35         4.04         3.55        10.52        14.07        10.75 
TCGA-06-0141 TCGA-06-0143 TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        9.21        11.74         7.82        11.80        12.79         8.65 
TCGA-06-0156 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 TCGA-06-0169 TCGA-06-0175 
        5.39        56.84         5.29        19.04         3.12         2.73 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0210 TCGA-06-0238 TCGA-06-0409 TCGA-06-0645 
       28.47        14.93         4.96        11.80        70.52         3.22 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0876 TCGA-06-0877 TCGA-06-0881 TCGA-06-1084 
       22.29        19.53         8.91         6.71         5.85         7.43 
TCGA-06-1086 TCGA-06-1087 TCGA-06-1802 TCGA-06-1805 TCGA-06-2569 TCGA-08-0353 
        6.35         3.58         7.86         4.18         0.43         6.41 
TCGA-08-0356 TCGA-08-0358 TCGA-08-0392 TCGA-08-0524 TCGA-12-0616 TCGA-12-0620 
       14.70        19.50         0.30         6.51        14.40         5.95 
TCGA-12-0654 TCGA-12-0656 TCGA-12-0688 TCGA-12-0703 TCGA-12-0778 TCGA-12-1092 
        7.17        65.88        24.13        18.08        14.83        21.63 
TCGA-12-1093 TCGA-12-1096 TCGA-12-1602 TCGA-12-3644 TCGA-12-3651 TCGA-14-0813 
       11.97         9.11         6.38        59.41        11.77         1.35 
TCGA-14-0871 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1794 TCGA-14-1795 
       28.90         1.12         3.75        32.02         0.99         1.94 
TCGA-14-2555 TCGA-15-1447 TCGA-19-0957 TCGA-19-2625 TCGA-19-4068 TCGA-26-1443 
        7.96        53.19        21.86         4.08         4.47         7.10 
TCGA-26-5132 TCGA-27-1830 TCGA-27-1838 TCGA-27-2524 TCGA-28-1750 TCGA-28-1755 
        9.40         4.80        11.51         7.59         8.32         1.51 
TCGA-28-1757 TCGA-28-1760 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 
        0.13         4.70         9.80        14.20        13.64         4.21 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1982 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 
        0.10        15.85         4.67        12.69        12.23        20.78 
TCGA-41-2571 TCGA-41-2572 TCGA-76-4928 
        0.85        13.35         3.09 

subtype1 subtype2 subtype3 subtype4 
    0.10     0.13     0.10     0.10 
subtype1 subtype2 subtype3 subtype4 
   51.32   127.56    53.79    92.61 
subtype1 subtype2 subtype3 subtype4 
  10.555   10.550    8.400   10.750 
[1] "0.1 - 51.3 (10.6)"  "0.1 - 127.6 (10.6)" "0.1 - 53.8 (8.4)"  
[4] "0.1 - 92.6 (10.8)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [13] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
 [67] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
 [97] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[109] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[115] "subtype2" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[151] "subtype3" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[169] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
[175] "subtype1" "subtype2" "subtype4" "subtype3" "subtype3" "subtype4"
[181] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[187] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[217] "subtype1" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[223] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[247] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[253] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[259] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
[271] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[283] "subtype4" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[289] "subtype1" "subtype2" "subtype4" "subtype4" "subtype2" "subtype1"
[295] "subtype1" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype2"
[313] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[319] "subtype4" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[331] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[337] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[343] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[355] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[361] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[367] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[379] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[385] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
[391] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[397] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[403] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype2"
[409] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[415] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype3"
[421] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype1"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[439] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[451] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[457] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[469] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[475] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[481] "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [13] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
 [67] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
 [97] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[109] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[115] "subtype2" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[151] "subtype3" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[169] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
[175] "subtype1" "subtype2" "subtype4" "subtype3" "subtype3" "subtype4"
[181] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[187] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[217] "subtype1" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[223] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[247] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[253] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[259] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
[271] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[283] "subtype4" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[289] "subtype1" "subtype2" "subtype4" "subtype4" "subtype2" "subtype1"
[295] "subtype1" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype2"
[313] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[319] "subtype4" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[331] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[337] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[343] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[355] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[361] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[367] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[379] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[385] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
[391] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[397] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[403] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype2"
[409] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[415] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype3"
[421] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype1"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[439] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[451] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[457] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[469] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[475] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[481] "subtype3" "subtype3"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [13] "subtype1" "subtype3" "subtype4" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
 [67] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
 [85] "subtype3" "subtype1" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
 [97] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[109] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[115] "subtype2" "subtype2" "subtype3" "subtype4" "subtype4" "subtype4"
[121] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[133] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[145] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[151] "subtype3" "subtype1" "subtype1" "subtype2" "subtype4" "subtype2"
[157] "subtype1" "subtype3" "subtype3" "subtype1" "subtype4" "subtype2"
[163] "subtype2" "subtype1" "subtype3" "subtype4" "subtype4" "subtype1"
[169] "subtype3" "subtype1" "subtype3" "subtype2" "subtype4" "subtype4"
[175] "subtype1" "subtype2" "subtype4" "subtype3" "subtype3" "subtype4"
[181] "subtype4" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[187] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[193] "subtype3" "subtype2" "subtype3" "subtype2" "subtype4" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[205] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype4"
[217] "subtype1" "subtype2" "subtype4" "subtype2" "subtype4" "subtype3"
[223] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[229] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[235] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[241] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[247] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype4"
[253] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[259] "subtype4" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[265] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
[271] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype4" "subtype4" "subtype1" "subtype1"
[283] "subtype4" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[289] "subtype1" "subtype2" "subtype4" "subtype4" "subtype2" "subtype1"
[295] "subtype1" "subtype2" "subtype4" "subtype1" "subtype2" "subtype1"
[301] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype4" "subtype2" "subtype2"
[313] "subtype3" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[319] "subtype4" "subtype4" "subtype3" "subtype1" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype3" "subtype1" "subtype4" "subtype4"
[331] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[337] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[343] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[349] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[355] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[361] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[367] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[379] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[385] "subtype4" "subtype1" "subtype1" "subtype2" "subtype4" "subtype3"
[391] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[397] "subtype4" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[403] "subtype3" "subtype2" "subtype4" "subtype3" "subtype2" "subtype2"
[409] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[415] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype3"
[421] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype1"
[427] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[433] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype4"
[439] "subtype4" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[445] "subtype4" "subtype4" "subtype4" "subtype4" "subtype1" "subtype1"
[451] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[457] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[469] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[475] "subtype3" "subtype1" "subtype4" "subtype2" "subtype2" "subtype1"
[481] "subtype3" "subtype3"
D3V2, continuous
D3V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   56   88
  subtype2   68   91
  subtype3   26   48
  subtype4   36   69
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       56       68       26       36
  MALE         88       91       48       69
D3V4, continuous
D3V5, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  102   42
  subtype2  108   51
  subtype3   46   28
  subtype4   71   34
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO       102      108       46       71
  YES       42       51       28       34
D3V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   75   69
  subtype2   78   81
  subtype3   39   35
  subtype4   56   49
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        75       78       39       56
  YES       69       81       35       49

Clustering(4) Variable = MIR_CHIERARCHICAL
D4V1, survival
          sevent
clus2        0   1
  subtype1  33 137
  subtype2  35 145
  subtype3  35  97
subtype1 subtype2 subtype3 
     170      180      132 
subtype1 subtype2 subtype3 
     137      145       97 
$subtype1
TCGA-02-0004 TCGA-02-0006 TCGA-02-0021 TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 
       11.34        18.35        77.62        20.12        53.06        42.74 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0039 TCGA-02-0047 TCGA-02-0051 
        2.83        14.14         3.58        10.52        14.70        15.06 
TCGA-02-0055 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0085 
        2.50         9.57        19.73        26.43        25.05        51.29 
TCGA-02-0086 TCGA-02-0089 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
        8.81        16.93        11.67        17.65        23.15        92.61 
TCGA-02-0266 TCGA-02-0285 TCGA-02-0290 TCGA-02-0317 TCGA-02-0332 TCGA-02-0333 
       17.69        13.87        15.95        12.23        25.71         4.37 
TCGA-02-0337 TCGA-02-0446 TCGA-02-0456 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 
       25.12         9.24         3.35        16.18         0.26         4.04 
TCGA-06-0127 TCGA-06-0130 TCGA-06-0133 TCGA-06-0139 TCGA-06-0141 TCGA-06-0143 
        3.55        10.52        14.07        10.75         9.21        11.74 
TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0156 TCGA-06-0164 
        7.82        11.80        12.79         8.65         5.39        56.84 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0175 TCGA-06-0176 TCGA-06-0188 TCGA-06-0189 
       19.04         3.12         2.73        51.32        28.47        14.93 
TCGA-06-0190 TCGA-06-0194 TCGA-06-0197 TCGA-06-0210 TCGA-06-0219 TCGA-06-0238 
       10.29         4.67         2.60         4.96         0.33        11.80 
TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 TCGA-06-0413 TCGA-06-0644 
       10.29         5.52        70.52         8.05         0.16        12.33 
TCGA-06-0645 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0876 
        3.22        22.29        19.53         5.36         2.70         8.91 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0881 TCGA-06-1084 TCGA-06-1086 TCGA-06-1800 
        6.71         7.17         5.85         7.43         6.35        26.79 
TCGA-06-1802 TCGA-06-2563 TCGA-06-2566 TCGA-06-2569 TCGA-06-5415 TCGA-06-5418 
        7.86         8.52         5.98         0.43         8.55         2.73 
TCGA-08-0346 TCGA-08-0353 TCGA-08-0354 TCGA-08-0356 TCGA-08-0358 TCGA-08-0359 
        4.34         6.41        15.06        14.70        19.50         0.95 
TCGA-08-0373 TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0521 TCGA-08-0522 
        4.41         0.30         0.56        11.77         4.80        18.25 
TCGA-12-0616 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0703 TCGA-12-0776 
       14.40         5.95         7.17        65.88        18.08         9.11 
TCGA-12-0778 TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1092 TCGA-12-1093 
       14.83        23.51         8.91        20.58        21.63        11.97 
TCGA-12-1094 TCGA-12-1096 TCGA-12-1602 TCGA-12-3644 TCGA-12-3651 TCGA-12-5295 
       11.38         9.11         6.38        59.41        11.77        13.08 
TCGA-14-0789 TCGA-14-0813 TCGA-14-0866 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 
       11.24         1.35        26.33        28.90        15.95        19.30 
TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1794 TCGA-14-2555 TCGA-14-3476 
        1.12         3.75        32.02         0.99         7.96         0.39 
TCGA-16-1060 TCGA-19-0964 TCGA-19-1385 TCGA-19-1389 TCGA-19-1790 TCGA-19-2625 
        3.65         3.39        10.75         4.64         5.03         4.08 
TCGA-19-4068 TCGA-26-1439 TCGA-26-1443 TCGA-26-5132 TCGA-26-5134 TCGA-27-1830 
        4.47        13.87         7.10         9.40         5.49         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1836 TCGA-27-1838 TCGA-27-2524 TCGA-27-2527 
       16.57         9.86        30.05        11.51         7.59        14.40 
TCGA-27-2528 TCGA-28-1745 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 
       15.75        11.31         7.59         1.18         1.51         0.13 
TCGA-28-1760 TCGA-28-2513 TCGA-28-5213 TCGA-28-5216 TCGA-28-5218 TCGA-32-1977 
        4.70         7.30         9.80        13.64         4.21         0.10 
TCGA-32-1978 TCGA-32-1982 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 
       15.85         4.67        12.69        12.23        20.78        15.95 
TCGA-32-2632 TCGA-32-2638 TCGA-41-2571 TCGA-41-2572 TCGA-76-4926 TCGA-76-4927 
        8.84         7.36         0.85        13.35         4.54        17.59 
TCGA-76-4928 TCGA-76-4934 
        3.09         2.53 

$subtype2
TCGA-02-0001 TCGA-02-0007 TCGA-02-0009 TCGA-02-0016 TCGA-02-0027 TCGA-02-0038 
        9.14        23.18        10.59        55.86        10.36        10.72 
TCGA-02-0043 TCGA-02-0054 TCGA-02-0058 TCGA-02-0060 TCGA-02-0075 TCGA-02-0079 
       18.28         6.54         8.35         6.02        20.84        27.22 
TCGA-02-0083 TCGA-02-0099 TCGA-02-0102 TCGA-02-0115 TCGA-02-0116 TCGA-02-0260 
       22.72         3.48        26.99        15.65        48.95        16.90 
TCGA-02-0269 TCGA-02-0271 TCGA-02-0289 TCGA-02-0324 TCGA-02-0326 TCGA-02-0330 
       10.75        14.47        14.20         7.69         0.16        15.91 
TCGA-02-0422 TCGA-02-0430 TCGA-02-0451 TCGA-02-2485 TCGA-06-0125 TCGA-06-0137 
       14.50        10.55        16.18        15.42        47.31        23.05 
TCGA-06-0138 TCGA-06-0145 TCGA-06-0147 TCGA-06-0157 TCGA-06-0162 TCGA-06-0171 
       22.16         2.33        16.70         3.19         2.56        13.02 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 TCGA-06-0187 
        0.23         2.20         2.53        40.37        37.02        26.33 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0208 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 
       18.28         7.04         5.46        11.84         0.20        12.43 
TCGA-06-0216 TCGA-06-0237 TCGA-06-0402 TCGA-06-0646 TCGA-06-0649 TCGA-06-0749 
       22.49        10.32         0.26         4.47         2.04         2.14 
TCGA-06-0750 TCGA-06-0879 TCGA-06-2557 TCGA-06-2559 TCGA-06-2562 TCGA-06-2564 
        0.92        22.98         1.08         4.90         2.83         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-5414 TCGA-08-0244 TCGA-08-0246 TCGA-08-0345 
        6.81         4.37         8.98        22.68         3.91         1.74 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0355 TCGA-08-0357 TCGA-08-0360 TCGA-08-0380 
        7.59         1.28        22.52        35.64        11.57        10.85 
TCGA-08-0390 TCGA-08-0510 TCGA-08-0511 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
       10.59         3.48         7.73         8.52        18.44        58.19 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0619 
        1.28        10.72        15.98        17.29         5.52        10.39 
TCGA-12-0657 TCGA-12-0662 TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0707 
        0.10        38.17        24.13         6.08         2.63        28.37 
TCGA-12-0769 TCGA-12-0775 TCGA-12-0780 TCGA-12-0821 TCGA-12-0826 TCGA-12-0827 
       12.43         5.49        14.27        10.62        27.78        38.76 
TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1097 TCGA-12-1098 
      127.56         5.82         6.21        30.54        14.53         3.98 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 TCGA-12-3652 TCGA-12-3653 
       25.28        13.61        25.78        11.54        34.52        11.74 
TCGA-12-5299 TCGA-14-0736 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 
        3.22        15.09         6.18        23.05         2.24        13.74 
TCGA-14-0817 TCGA-14-1452 TCGA-14-1453 TCGA-14-1823 TCGA-14-1827 TCGA-14-1829 
        5.39         7.10         1.15        17.82         5.88         7.13 
TCGA-14-2554 TCGA-15-0742 TCGA-16-0848 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 
       17.49         9.86         9.93        29.00         0.82         9.90 
TCGA-16-1056 TCGA-16-1062 TCGA-19-0955 TCGA-19-0962 TCGA-19-1386 TCGA-19-1388 
       13.35        18.28        11.77         0.43         9.07        12.95 
TCGA-19-1786 TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2621 
        7.13        12.66         3.25         0.13         9.67         1.08 
TCGA-19-2623 TCGA-19-2629 TCGA-19-2631 TCGA-26-1438 TCGA-26-1440 TCGA-26-5136 
        7.53        16.47         7.00        10.03         9.73         1.22 
TCGA-26-5139 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-2519 TCGA-27-2523 
        1.58        18.25        33.14        21.30        10.39        16.08 
TCGA-27-2526 TCGA-28-1747 TCGA-28-1749 TCGA-28-1750 TCGA-28-2502 TCGA-28-2506 
        2.86         2.53         9.17         8.32         0.66         6.74 
TCGA-28-2509 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        4.77         5.26         3.91         9.04        15.55         2.53 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5220 TCGA-32-1987 TCGA-32-2616 TCGA-32-4209 
       14.20         7.79        10.49        14.83         7.33        11.11 
TCGA-32-4211 TCGA-32-4213 TCGA-32-5222 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
       12.59        11.70         5.42         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-76-4925 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        6.02         0.20         4.77         3.65         9.14        47.93 

$subtype3
TCGA-02-0003 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0026 
        4.73        35.41        20.71        82.55        20.61        24.59 
TCGA-02-0028 TCGA-02-0048 TCGA-02-0052 TCGA-02-0057 TCGA-02-0069 TCGA-02-0071 
       90.58         3.19        12.59        19.86        28.70         5.49 
TCGA-02-0074 TCGA-02-0080 TCGA-02-0084 TCGA-02-0087 TCGA-02-0104 TCGA-02-0114 
       10.19        89.72         0.23        57.76        65.00        99.95 
TCGA-02-0258 TCGA-02-0281 TCGA-02-0321 TCGA-02-0325 TCGA-02-0338 TCGA-02-0339 
       16.54         3.98         9.86        10.62        10.59        12.39 
TCGA-02-0432 TCGA-02-0439 TCGA-02-0440 TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 
       47.11         0.66        11.34        16.80        12.92        15.29 
TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 TCGA-06-0146 TCGA-06-0158 TCGA-06-0166 
        0.10        22.72        32.48        20.09         5.46         5.29 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0221 TCGA-06-0241 TCGA-06-0410 
        1.97        53.98        19.00        18.02        14.96         4.67 
TCGA-06-0414 TCGA-06-0648 TCGA-06-0686 TCGA-06-0875 TCGA-06-0882 TCGA-06-0939 
       35.01         9.63         9.37         9.17         5.42        20.94 
TCGA-06-1087 TCGA-06-1801 TCGA-06-1805 TCGA-06-2558 TCGA-06-2561 TCGA-06-2570 
        3.58         8.65         4.18         0.76         9.27         9.37 
TCGA-06-5416 TCGA-06-5417 TCGA-08-0245 TCGA-08-0344 TCGA-08-0347 TCGA-08-0348 
        6.71         5.10        34.75       108.82        13.78        10.39 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0375 TCGA-08-0385 TCGA-08-0386 TCGA-08-0389 
        3.39        53.79         9.17         1.02        15.72         3.19 
TCGA-08-0524 TCGA-12-0618 TCGA-12-0670 TCGA-12-0772 TCGA-12-0773 TCGA-12-0820 
        6.51         1.61        25.97        53.10        43.10        18.48 
TCGA-12-1095 TCGA-12-1099 TCGA-12-1597 TCGA-12-1598 TCGA-12-3646 TCGA-12-3650 
       15.85         3.39        14.04         9.44        43.20        10.95 
TCGA-12-5301 TCGA-14-0812 TCGA-14-0865 TCGA-14-0867 TCGA-14-1451 TCGA-14-1454 
        2.01         3.25        16.50         2.04        23.11        30.15 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1795 TCGA-14-1821 
        0.92        40.93         6.12        12.43         1.94        17.75 
TCGA-14-1825 TCGA-14-3477 TCGA-14-4157 TCGA-15-1446 TCGA-15-1447 TCGA-15-1449 
        7.63         3.75         3.39        19.10        53.19         5.49 
TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1063 TCGA-16-1460 
        3.91        26.07        16.31         4.27        13.97         6.41 
TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-1387 TCGA-19-1390 TCGA-19-1392 
       21.86         8.61        14.27         5.95        25.38         3.48 
TCGA-19-1788 TCGA-19-2620 TCGA-19-2624 TCGA-26-1799 TCGA-26-5133 TCGA-26-5135 
        3.65         4.87         0.16         9.37        14.86         8.84 
TCGA-27-1837 TCGA-27-2518 TCGA-27-2521 TCGA-28-1746 TCGA-28-1752 TCGA-28-1756 
       14.04        24.72        10.39         0.20         8.45         2.83 
TCGA-28-5219 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1991 TCGA-32-2495 
        8.52        15.35        21.07         0.49        16.93        14.99 
TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-32-4719 TCGA-41-2573 TCGA-76-4935 
        8.88        13.15         3.68        10.85         8.94        10.78 

subtype1 subtype2 subtype3 
     0.1      0.1      0.1 
subtype1 subtype2 subtype3 
   92.61   127.56   108.82 
subtype1 subtype2 subtype3 
    9.83     9.98    10.70 
[1] "0.1 - 92.6 (9.8)"   "0.1 - 127.6 (10.0)" "0.1 - 108.8 (10.7)"
  [1] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[235] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[253] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[265] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[325] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[331] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[337] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[355] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[367] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[385] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[391] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[409] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[415] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[421] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[427] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[439] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[451] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[463] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[469] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[481] "subtype1" "subtype3"
  [1] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[235] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[253] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[265] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[325] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[331] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[337] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[355] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[367] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[385] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[391] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[409] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[415] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[421] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[427] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[439] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[451] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[463] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[469] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[481] "subtype1" "subtype3"
  [1] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [13] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [19] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [43] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype3"
 [49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
 [67] "subtype2" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [85] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[109] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[121] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[139] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[145] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[151] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[157] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[163] "subtype3" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[187] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[193] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[217] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[223] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[229] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[235] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[253] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[265] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[271] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[289] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[295] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[301] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[325] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[331] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[337] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[343] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[355] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[367] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[379] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[385] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[391] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[397] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[403] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[409] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[415] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[421] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[427] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[439] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[451] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[463] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[469] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[481] "subtype1" "subtype3"
D4V2, continuous
D4V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   58  112
  subtype2   80  100
  subtype3   48   84
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       58       80       48
  MALE        112      100       84
D4V4, continuous
D4V5, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  113   57
  subtype2  121   59
  subtype3   93   39
     clus
vv    subtype1 subtype2 subtype3
  NO       113      121       93
  YES       57       59       39
D4V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   88   82
  subtype2   92   88
  subtype3   68   64
     clus
vv    subtype1 subtype2 subtype3
  NO        88       92       68
  YES       82       88       64

Clustering(5) Variable = METHLYATION_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 22 57
  subtype2 28 95
  subtype3 22 56
subtype1 subtype2 subtype3 
      79      123       78 
subtype1 subtype2 subtype3 
      57       95       56 
$subtype1
TCGA-02-0001 TCGA-02-0027 TCGA-02-0033 TCGA-02-0034 TCGA-02-0054 TCGA-02-0055 
        9.14        10.36         2.83        14.14         6.54         2.50 
TCGA-02-0057 TCGA-02-0060 TCGA-02-0075 TCGA-02-0085 TCGA-02-0086 TCGA-02-0107 
       19.86         6.02        20.84        51.29         8.81        17.65 
TCGA-02-0113 TCGA-02-0115 TCGA-02-2470 TCGA-06-0124 TCGA-06-0130 TCGA-06-0133 
       92.61        15.65        12.92         4.04        10.52        14.07 
TCGA-06-0139 TCGA-06-0141 TCGA-06-0143 TCGA-06-0147 TCGA-06-0169 TCGA-06-0878 
       10.75         9.21        11.74        16.70         3.12         7.17 
TCGA-06-0881 TCGA-06-0882 TCGA-06-1084 TCGA-06-1086 TCGA-06-2561 TCGA-06-2566 
        5.85         5.42         7.43         6.35         9.27         5.98 
TCGA-06-2567 TCGA-12-0822 TCGA-12-0826 TCGA-12-0829 TCGA-12-1089 TCGA-12-1090 
        4.37        23.51        27.78        20.58         5.82         6.21 
TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 TCGA-12-1599 TCGA-14-0736 
       11.97        11.38        15.85         9.11        25.28        15.09 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1827 TCGA-14-2554 TCGA-14-2555 TCGA-15-1446 
       15.95        19.30         5.88        17.49         7.96        19.10 
TCGA-16-1045 TCGA-19-0955 TCGA-19-1385 TCGA-19-1389 TCGA-19-1787 TCGA-19-2619 
       29.00        11.77        10.75         4.64        12.66         9.67 
TCGA-19-2623 TCGA-19-2625 TCGA-19-4068 TCGA-26-1438 TCGA-26-1439 TCGA-27-1831 
        7.53         4.08         4.47        10.03        13.87        16.57 
TCGA-27-1832 TCGA-27-2526 TCGA-27-2527 TCGA-28-1745 TCGA-28-1751 TCGA-28-1752 
        9.86         2.86        14.40        11.31         7.59         8.45 
TCGA-28-1760 TCGA-28-2502 TCGA-28-2506 TCGA-28-2513 TCGA-32-1977 TCGA-32-1986 
        4.70         0.66         6.74         7.30         0.10        12.69 
TCGA-32-1987 TCGA-32-2491 TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-4209 
       14.83        12.23        15.95         7.33         8.84        11.11 
TCGA-41-4097 
        0.20 

$subtype2
TCGA-02-0003 TCGA-02-0007 TCGA-02-0009 TCGA-02-0021 TCGA-02-0037 TCGA-02-0038 
        4.73        23.18        10.59        77.62         3.58        10.72 
TCGA-02-0043 TCGA-02-0046 TCGA-02-0064 TCGA-02-0071 TCGA-02-0074 TCGA-02-0083 
       18.28         6.84        19.73         5.49        10.19        22.72 
TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0116 TCGA-02-2485 TCGA-02-2486 
       16.93         3.48        26.99        48.95        15.42        16.18 
TCGA-06-0122 TCGA-06-0125 TCGA-06-0126 TCGA-06-0137 TCGA-06-0145 TCGA-06-0148 
        0.26        47.31         0.10        23.05         2.33         9.80 
TCGA-06-0155 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 TCGA-06-0939 TCGA-06-1802 
        8.65         8.91         6.71        22.98        20.94         7.86 
TCGA-06-2557 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-12-0670 
        1.08         2.83         8.52         5.95         6.81        25.97 
TCGA-12-0820 TCGA-12-0828 TCGA-12-1091 TCGA-12-1092 TCGA-12-1097 TCGA-12-1098 
       18.48         8.91        30.54        21.63        14.53         3.98 
TCGA-12-1597 TCGA-12-1598 TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 
       14.04         9.44        13.61         6.38        59.41        43.20 
TCGA-12-3648 TCGA-12-3649 TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-14-0783 
       25.78        11.54        10.95        11.77        34.52         6.18 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 
       23.05         2.24        11.24        13.74         3.25         1.35 
TCGA-14-0817 TCGA-14-0866 TCGA-14-0867 TCGA-14-1396 TCGA-14-1402 TCGA-14-1452 
        5.39        26.33         2.04         1.12        32.02         7.10 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1794 TCGA-14-1795 TCGA-14-1823 TCGA-14-1829 
        1.15        30.15         0.99         1.94        17.82         7.13 
TCGA-16-0846 TCGA-16-0848 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 
        3.91         9.93         9.90        13.35         3.65        18.28 
TCGA-16-1063 TCGA-19-0957 TCGA-19-0962 TCGA-19-0964 TCGA-19-1386 TCGA-19-1387 
       13.97        21.86         0.43         3.39         9.07         5.95 
TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1789 TCGA-19-1790 TCGA-19-1791 
       25.38         3.48         7.13         3.25         5.03         0.13 
TCGA-19-2620 TCGA-19-2621 TCGA-19-2631 TCGA-26-1443 TCGA-26-1799 TCGA-27-1833 
        4.87         1.08         7.00         7.10         9.37        18.25 
TCGA-27-1835 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 TCGA-27-2524 
       21.30        11.51        24.72        10.39        16.08         7.59 
TCGA-27-2528 TCGA-28-1746 TCGA-28-1749 TCGA-28-1750 TCGA-28-1753 TCGA-28-1757 
       15.75         0.20         9.17         8.32         1.18         0.13 
TCGA-28-2499 TCGA-28-2509 TCGA-28-2514 TCGA-32-1970 TCGA-32-1978 TCGA-32-1982 
        3.09         4.77         5.26        15.35        15.85         4.67 
TCGA-32-1991 TCGA-32-2495 TCGA-32-2634 TCGA-32-2638 TCGA-32-4211 TCGA-32-4719 
       16.93        14.99         8.88         7.36        12.59        10.85 
TCGA-41-2572 TCGA-41-3392 TCGA-41-3393 
       13.35         0.99         4.44 

$subtype3
TCGA-02-0006 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0024 TCGA-02-0028 
       18.35        35.41        20.71        82.55        53.06        90.58 
TCGA-02-0047 TCGA-02-0052 TCGA-02-0058 TCGA-02-0069 TCGA-02-0080 TCGA-02-0114 
       14.70        12.59         8.35        28.70        89.72        99.95 
TCGA-02-2466 TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 TCGA-06-0875 TCGA-06-1087 
       16.80        15.29        22.72        32.48         9.17         3.58 
TCGA-06-1800 TCGA-06-1801 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2569 
       26.79         8.65         4.18         0.76         4.90         0.43 
TCGA-06-2570 TCGA-12-0818 TCGA-12-0819 TCGA-12-0821 TCGA-12-0827 TCGA-12-1088 
        9.37        91.73        24.76        10.62        38.76       127.56 
TCGA-12-1099 TCGA-12-3653 TCGA-14-0865 TCGA-14-0871 TCGA-14-1401 TCGA-14-1451 
        3.39        11.74        16.50        28.90         3.75        23.11 
TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1821 TCGA-14-1825 
        0.92        40.93         6.12        12.43        17.75         7.63 
TCGA-14-3476 TCGA-14-3477 TCGA-14-4157 TCGA-15-1447 TCGA-15-1449 TCGA-16-0849 
        0.39         3.75         3.39        53.19         5.49        26.07 
TCGA-16-0850 TCGA-16-0861 TCGA-16-1047 TCGA-16-1460 TCGA-19-0960 TCGA-19-0963 
       16.31         4.27         0.82         6.41         8.61        14.27 
TCGA-19-1388 TCGA-19-1788 TCGA-19-2624 TCGA-19-2629 TCGA-26-1440 TCGA-27-1830 
       12.95         3.65         0.16        16.47         9.73         4.80 
TCGA-27-1834 TCGA-27-1836 TCGA-27-1837 TCGA-27-2521 TCGA-28-1747 TCGA-28-1755 
       33.14        30.05        14.04        10.39         2.53         1.51 
TCGA-28-1756 TCGA-28-2512 TCGA-32-1973 TCGA-32-1976 TCGA-32-2494 TCGA-32-4208 
        2.83        11.28        21.07         0.49        20.78        13.15 
TCGA-32-4210 TCGA-32-4213 TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3915 
        3.68        11.70         0.85         8.94         9.53         6.02 

subtype1 subtype2 subtype3 
    0.10     0.10     0.16 
subtype1 subtype2 subtype3 
   92.61    77.62   127.56 
subtype1 subtype2 subtype3 
   10.03     9.37    11.72 
[1] "0.1 - 92.6 (10.0)"  "0.1 - 77.6 (9.4)"   "0.2 - 127.6 (11.7)"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [43] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [97] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[217] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[229] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[235] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[241] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[247] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[259] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[271] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [43] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [97] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[217] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[229] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[235] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[241] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[247] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[259] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[271] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype2" "subtype3" "subtype1"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [19] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [25] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
 [31] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
 [43] "subtype3" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [67] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [85] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [91] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
 [97] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[103] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[145] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[169] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[187] "subtype1" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
[193] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[211] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[217] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[229] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[235] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[241] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[247] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[253] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[259] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[271] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype2" "subtype3" "subtype1"
D5V2, continuous
D5V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   34   45
  subtype2   50   73
  subtype3   30   48
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       34       50       30
  MALE         45       73       48
D5V4, continuous
D5V5, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   63   16
  subtype2   84   39
  subtype3   59   19
     clus
vv    subtype1 subtype2 subtype3
  NO        63       84       59
  YES       16       39       19
D5V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   49   30
  subtype2   67   56
  subtype3   48   30
     clus
vv    subtype1 subtype2 subtype3
  NO        49       67       48
  YES       30       56       30
                                    V1.D 
                         "Time to Death" 
                                      V2 
                                   "AGE" 
                                      V3 
                                "GENDER" 
                                      V4 
           "KARNOFSKY.PERFORMANCE.SCORE" 
                                      V5 
"RADIATIONS.RADIATION.REGIMENINDICATION" 
                                      V6 
                   "NEOADJUVANT.THERAPY" 
> q(save="no")
