
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.59.3844/Clusters2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Clinical_Clusters_onlysig.59.3844/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergedClusteringPipeline/KIRC/1710579/1.GDAC_mergedClustering.Finished/KIRC.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPickerPipeline/KIRC/1669679/1.GDAC_clinicalDataPicker.Finished/KIRC.clin.merged.picked.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=1", "-MF=ALL", "-oT=", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"  "-oT="
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  

nPatients in clinical file=502, in cluster file=499, common to both=499
[1]   7 499
[1] "MRNA_CNMF"
[1] 3
 1  2  3 
34 24 14 
 1  2  3 
34 24 14 
[1] "MRNA_CHIERARCHICAL"
[1] 3
 1  2  3 
15 23 34 
 1  2  3 
15 23 34 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4 
79 84 60 60 
 1  2  3  4 
79 84 60 60 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3 
198 100 171 
  1   2   3 
198 100 171 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 52 221 196 
  1   2   3 
 52 221 196 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3   4 
172  84  64 143 
  1   2   3   4 
172  84  64 143 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
 99 123 241 
  1   2   3 
 99 123 241 
[1] "data2feature, selection=ALL"
 [1] "YEARSTOBIRTH"                          
 [2] "DAYSTODEATH"                           
 [3] "DAYSTOLASTFOLLOWUP"                    
 [4] "VITALSTATUS"                           
 [5] "DCCUPLOADDATE"                         
 [6] "PRIMARYSITEOFDESEASE"                  
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "DAYSTOLASTKNOWNALIVE"                  
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "PATHOLOGICSPREAD(PT)"                  
[13] "PATHOLOGICSPREAD(PN)"                  
[14] "PATHOLOGICSPREAD(M)"                   
[15] "TUMORSTAGE"                            
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NEOADJUVANTTHERAPY"                    
[18] "BATCHNUMBER"                           

Input Data has 18 rows and 499 columns.

[1] "Batch" "18"   
[1] "Last Follow UP"
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3313 TCGA-A3-3316 
        1120         1436           16         1190          735         1493 
TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3323 TCGA-A3-3324 
        1491         1130         1508         1477         1105         1186 
TCGA-A3-3325 TCGA-A3-3326 TCGA-A3-3328 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3335 
         751         1137          785          706         1485          664 
TCGA-A3-3336 TCGA-A3-3343 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3349 TCGA-A3-3351 
        1043          944          137         1097         1385          910 
TCGA-A3-3352 TCGA-A3-3357 TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3363 
         561         1425         1307         1286         1559          319 
TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3372 TCGA-A3-3373 TCGA-A3-3374 
         872         1054          776          735          334         1313 
TCGA-A3-3376 TCGA-A3-3378 TCGA-A3-3380 TCGA-A3-3382 TCGA-A3-3383 TCGA-A3-3385 
        1070          630          567          574          861          726 
TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3426 TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3429 
         616         3343          884         2566         2223         2017 
TCGA-AK-3430 TCGA-AK-3431 TCGA-AK-3433 TCGA-AK-3434 TCGA-AK-3436 TCGA-AK-3440 
         480         1853         2192         2086         2043         1744 
TCGA-AK-3443 TCGA-AK-3444 TCGA-AK-3445 TCGA-AK-3447 TCGA-AK-3450 TCGA-AK-3451 
        1423         1471         1279         1217         1499         1481 
TCGA-AK-3453 TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3456 TCGA-AK-3458 TCGA-AK-3460 
        1190          873          683           46         1168          951 
TCGA-AK-3461 TCGA-AK-3465 TCGA-AS-3777 TCGA-AS-3778 TCGA-B0-4688 TCGA-B0-4690 
         853          369           40           NA           98           43 
TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4697 TCGA-B0-4698 
         139           77          106          866          577           42 
TCGA-B0-4699 TCGA-B0-4700 TCGA-B0-4701 TCGA-B0-4703 TCGA-B0-4706 TCGA-B0-4707 
         109           NA          208          182           26          599 
TCGA-B0-4710 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 
           5         1337          201            3          214          266 
TCGA-B0-4811 TCGA-B0-4813 TCGA-B0-4814 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 
        1196           18           47         1491         1081          848 
TCGA-B0-4818 TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4823 TCGA-B0-4824 
         426          183         1229         1111          454         1463 
TCGA-B0-4827 TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4834 TCGA-B0-4836 TCGA-B0-4837 
         884          307         2385         2090         1238         1292 
TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4841 TCGA-B0-4842 TCGA-B0-4843 TCGA-B0-4844 
         728         1638          139         1636          320          313 
TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4848 TCGA-B0-4849 TCGA-B0-4852 
        1985         1199          792          882           69         1079 
TCGA-B0-4945 TCGA-B0-5075 TCGA-B0-5077 TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5083 
        2145          608         1291          222          233          465 
TCGA-B0-5084 TCGA-B0-5085 TCGA-B0-5088 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 
         221          769          433          459          333          245 
TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 TCGA-B0-5099 TCGA-B0-5100 TCGA-B0-5102 
          67          151         1584          485         1913         2763 
TCGA-B0-5104 TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5110 
        2751         1597          927          162          586          560 
TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5117 TCGA-B0-5119 TCGA-B0-5120 
          22           90          103           NA           48           55 
TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5400 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5691 
         186          190          677           10         2180         2781 
TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5697 
        1487         1852          469         1042          944         1135 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5701 TCGA-B0-5702 TCGA-B0-5703 
        2181         2425          375         1276         1158          262 
TCGA-B0-5705 TCGA-B0-5706 TCGA-B0-5707 TCGA-B0-5709 TCGA-B0-5710 TCGA-B0-5711 
        3335         2414         2592         2357          957         2553 
TCGA-B0-5712 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-3923 TCGA-B2-3924 TCGA-B2-4098 
        2438         1864         2324          178          194           50 
TCGA-B2-4099 TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5636 
         110           90           15          214          315          258 
TCGA-B2-5639 TCGA-B2-5641 TCGA-B4-5377 TCGA-B4-5378 TCGA-B4-5832 TCGA-B4-5834 
         191          168          291          175            7           38 
TCGA-B4-5835 TCGA-B4-5836 TCGA-B4-5838 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4143 
          16          141          166           11            7          709 
TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4619 
         511          379          279          404          255           19 
TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-4622 TCGA-B8-5158 TCGA-B8-5159 TCGA-B8-5162 
         226          215          181           90          133           22 
TCGA-B8-5163 TCGA-B8-5164 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5549 
           4           23            8          248           14          194 
TCGA-B8-5550 TCGA-B8-5551 TCGA-B8-5552 TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4159 
         197           15          219           14         3377         2600 
TCGA-BP-4160 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4163 TCGA-BP-4164 TCGA-BP-4165 
        2881         2746         3074         2839          992         2946 
TCGA-BP-4166 TCGA-BP-4167 TCGA-BP-4169 TCGA-BP-4170 TCGA-BP-4173 TCGA-BP-4174 
          13         2718          701         2343         1893         1879 
TCGA-BP-4176 TCGA-BP-4177 TCGA-BP-4325 TCGA-BP-4326 TCGA-BP-4327 TCGA-BP-4329 
        1955         1670         2964         1624          108          845 
TCGA-BP-4330 TCGA-BP-4332 TCGA-BP-4334 TCGA-BP-4335 TCGA-BP-4337 TCGA-BP-4338 
        1888         1133          645          460            2         2746 
TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4344 TCGA-BP-4345 
         562         1589         2256         1912         1666         1516 
TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4351 TCGA-BP-4352 TCGA-BP-4353 
        1493         1367          372          969          344          375 
TCGA-BP-4354 TCGA-BP-4355 TCGA-BP-4756 TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4760 
        1034          953          374         2208         2324         2249 
TCGA-BP-4761 TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 
         182         1343         1270         2184         1461          400 
TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4771 TCGA-BP-4774 TCGA-BP-4775 TCGA-BP-4776 
        1876          329          161         1884         1842          410 
TCGA-BP-4777 TCGA-BP-4781 TCGA-BP-4782 TCGA-BP-4784 TCGA-BP-4787 TCGA-BP-4789 
        1731         2080          354         1854          479         1489 
TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4801 
        1111          620         1107          334         1133         1124 
TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4807 TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4961 
         203         1459          211         2660         2172         1935 
TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4964 TCGA-BP-4965 TCGA-BP-4967 TCGA-BP-4968 
        1785         1834         1862         1871          204         1745 
TCGA-BP-4969 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4972 TCGA-BP-4973 TCGA-BP-4974 
        1794          432         1487         1501         1384          220 
TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4977 TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4983 
        1433         1632          454         1097         1013         1412 
TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4987 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4991 
         951          785         1124          827          117         1044 
TCGA-BP-4992 TCGA-BP-4993 TCGA-BP-4994 TCGA-BP-4995 TCGA-BP-4998 TCGA-BP-4999 
         500          176         1307         1371          931         1266 
TCGA-BP-5000 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 TCGA-BP-5008 
         563         1177         1126          840         1140         1071 
TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5168 TCGA-BP-5169 TCGA-BP-5170 TCGA-BP-5173 
        1092          877         1463          192         2411           54 
TCGA-BP-5174 TCGA-BP-5175 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5178 TCGA-BP-5180 
        2257          932         1590          293         1912         1892 
TCGA-BP-5181 TCGA-BP-5182 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5185 TCGA-BP-5186 
        1495         1165         1102         1133         1132          693 
TCGA-BP-5187 TCGA-BP-5189 TCGA-BP-5190 TCGA-BP-5191 TCGA-BP-5192 TCGA-BP-5194 
         406          822         1010          966          714          408 
TCGA-BP-5195 TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-BP-5200 TCGA-BP-5201 
         748         1018          603         1354          881          951 
TCGA-BP-5202 TCGA-CJ-4634 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 
          29         1820         1416         1924         2227          431 
TCGA-CJ-4639 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4642 TCGA-CJ-4643 TCGA-CJ-4644 
        2308         1998         1661         1617         1792          336 
TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4871 TCGA-CJ-4872 TCGA-CJ-4873 TCGA-CJ-4874 
         645         2554         2422         1435         2258         2283 
TCGA-CJ-4875 TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4884 
        2353         1955         2186         2013         1883          993 
TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4888 TCGA-CJ-4889 TCGA-CJ-4890 
        2125         1951          649         1566         1945         2085 
TCGA-CJ-4891 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4895 TCGA-CJ-4897 
         818         1520          749          841         1200         1808 
TCGA-CJ-4899 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4902 TCGA-CJ-4903 TCGA-CJ-4904 
        1527         1274         1450         1519         1559         1792 
TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4908 TCGA-CJ-4912 TCGA-CJ-4913 TCGA-CJ-4916 
        1495         1498         1530         1656         1173         1372 
TCGA-CJ-4918 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5672 TCGA-CJ-5675 
          92          139          572         1942         2190         2429 
TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5681 
        2575          782          573          678          768          551 
TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5684 TCGA-CJ-5686 TCGA-CJ-5689 TCGA-CJ-6027 
        1883         1889         2230         2038            6         1855 
TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6031 TCGA-CJ-6032 TCGA-CJ-6033 TCGA-CW-5580 
          NA           NA         1905         2548           NA         1964 
TCGA-CW-5581 TCGA-CW-5583 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-5588 
        2799         2489          164         2609         2226         2016 
TCGA-CW-5589 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6087 TCGA-CW-6088 TCGA-CW-6090 
        2377         1075         2270           41         2311         2308 
TCGA-CW-6093 TCGA-CW-6097 TCGA-CZ-4853 TCGA-CZ-4854 TCGA-CZ-4856 TCGA-CZ-4857 
        2430          570          774         1404           18         1432 
TCGA-CZ-4858 TCGA-CZ-4859 TCGA-CZ-4860 TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4863 
        1943         1787          205          445         1843         1690 
TCGA-CZ-4864 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5451 TCGA-CZ-5452 TCGA-CZ-5453 
        2830          165         1768         1668         1556           25 
TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5456 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 
         722          561         1558         1547         1558         1515 
TCGA-CZ-5460 TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5463 TCGA-CZ-5464 TCGA-CZ-5465 
        1430          330          311          662         1492         1377 
TCGA-CZ-5466 TCGA-CZ-5467 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5470 TCGA-CZ-5982 
         685           73           59          945           NA         2042 
TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5986 TCGA-CZ-5987 TCGA-CZ-5988 TCGA-CZ-5989 
        1491         1629          373          435          693         1599 
TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5567 TCGA-DV-5568 TCGA-DV-5569 TCGA-DV-5573 
        1329         1398          909          370          355         1130 
TCGA-DV-5574 TCGA-DV-5575 TCGA-DV-5576 TCGA-EU-5904 TCGA-EU-5905 TCGA-EU-5906 
         723         1005          727          550          118          206 
TCGA-EU-5907 
         126 
Variable 1:'AGE':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'DAYSTODEATH':	nDistinctValues=152,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 3:'DAYSTOLASTFOLLOWUP':	nDistinctValues=445,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=425,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=5,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'PATHOLOGY.T':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'PATHOLOGY.N':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'PATHOLOGICSPREAD(M)':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'TUMOR.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'NEOADJUVANT.THERAPY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'BATCH.NUMBER':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                         "GENDER"                     
[3] "KARNOFSKY.PERFORMANCE.SCORE" "PATHOLOGY.T"                
[5] "PATHOLOGY.N"                 "PATHOLOGICSPREAD(M)"        
[7] "TUMOR.STAGE"                 "NEOADJUVANT.THERAPY"        
[1] "TUMOR.?STAGE" "7"           
[1] "stage2"
vv
  1   2   3   4 
243  52 123  81 
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "4"          
[1] "PATHOLOGY.N" "5"          
Output Data has 499 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=59, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=5, binary=FALSE, numeric=TRUE
PATHOLOGY.T, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
247  64 177  11 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
247  64 177  11 
$ClinVariableName
[1] "PATHOLOGY.T"

$Table
vv
 T1  T2  T3  T4 
247  64 177  11 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
247  64 177  11 
PATHOLOGY.N, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGICSPREAD(M), nv=2, binary=FALSE, numeric=FALSE
TUMOR.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('TUMOR.?STAGE',vnm)"
vv
  I  II III  IV 
243  52 123  81 
[1] "table(vv)"
vv
  I  II III  IV 
243  52 123  81 
$ClinVariableName
[1] "TUMOR.STAGE"

$Table
vv
  I  II III  IV 
243  52 123  81 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


  I  II III  IV 
243  52 123  81 
NEOADJUVANT.THERAPY, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 29  4
  subtype2 16  8
  subtype3 13  1
subtype1 subtype2 subtype3 
      33       24       14 
subtype1 subtype2 subtype3 
       4        8        1 
$subtype1
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 
       36.82        47.21        49.58        48.56        38.99        24.69 
TCGA-A3-3326 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 
       37.38        23.21        48.82        31.04        45.53        29.92 
TCGA-A3-3352 TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3372 TCGA-A3-3380 
       18.44        42.28        51.25        28.67        24.16        18.64 
TCGA-A3-3383 TCGA-AK-3444 TCGA-AK-3455 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4102 
       28.31        48.36        22.45         6.38         3.62         0.49 
TCGA-B8-4151 TCGA-B8-4154 TCGA-B8-4619 TCGA-BP-4162 TCGA-BP-4164 TCGA-CJ-4634 
        9.17         8.38         0.62       101.06        32.61        59.84 
TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 
       75.88        58.92        11.05 

$subtype2
TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 
        0.53        39.12        49.08        49.02        37.15        36.33 
TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3374 TCGA-A3-3378 TCGA-A3-3382 
       21.83         4.50        36.07        43.17        20.71        18.87 
TCGA-AK-3426 TCGA-B2-4098 TCGA-B8-4143 TCGA-B8-4620 TCGA-BP-4161 TCGA-BP-4163 
       29.06         1.64        23.31         7.43        90.28        93.34 
TCGA-BP-4167 TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 
       89.36        63.25        73.22        14.17        65.69        54.61 

$subtype3
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3336 TCGA-A3-3363 TCGA-AK-3427 TCGA-AK-3440 
       24.16        25.81        34.29        10.49        84.36        57.34 
TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 
       46.78        40.01        39.12         1.51        12.13         1.32 
TCGA-B2-3923 TCGA-B8-4148 
        5.85        12.46 

subtype1 subtype2 subtype3 
    0.49     0.53     1.32 
subtype1 subtype2 subtype3 
  101.06    93.34    84.36 
subtype1 subtype2 subtype3 
  31.040   36.740   24.985 
[1] "0.5 - 101.1 (31.0)" "0.5 - 93.3 (36.7)"  "1.3 - 84.4 (25.0)" 
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [7] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[19] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[25] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[31] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[37] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[55] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[61] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
D1V2, continuous
D1V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15   19
  subtype2   10   14
  subtype3    4   10
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       15       10        4
  MALE         19       14       10
D1V4, continuous
[1] "Remove cluster labels:" "subtype2"              
clus
subtype2 
       1 
character(0)
D1V5, multiclass
D1V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   18    0
  subtype2   10    3
  subtype3    7    0
   clus
vv  subtype1 subtype2 subtype3
  0       18       10        7
  1        0        3        0
D1V7, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33    1
  subtype2   20    4
  subtype3   14    0
    clus
vv   subtype1 subtype2 subtype3
  M0       33       20       14
  M1        1        4        0
D1V8, multiclass
D1V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   34
  subtype2    0   24
  subtype3    1   13
     clus
vv    subtype1 subtype2 subtype3
  NO         0        0        1
  YES       34       24       13

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2       0  1
  subtype1 13  2
  subtype2 16  7
  subtype3 29  4
subtype1 subtype2 subtype3 
      15       23       33 
subtype1 subtype2 subtype3 
       2        7        4 
$subtype1
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3336 TCGA-A3-3363 TCGA-AK-3427 TCGA-AK-3440 
       24.16        25.81        34.29        10.49        84.36        57.34 
TCGA-AK-3443 TCGA-AK-3447 TCGA-AK-3453 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 
       46.78        40.01        39.12         1.51        12.13         1.32 
TCGA-B2-3923 TCGA-B2-4098 TCGA-B8-4148 
        5.85         1.64        12.46 

$subtype2
TCGA-A3-3306 TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 
       36.82         0.53        39.12        49.08        49.02        37.15 
TCGA-A3-3323 TCGA-A3-3335 TCGA-A3-3346 TCGA-A3-3347 TCGA-A3-3374 TCGA-A3-3378 
       36.33        21.83         4.50        36.07        43.17        20.71 
TCGA-A3-3382 TCGA-AK-3426 TCGA-B8-4143 TCGA-B8-4620 TCGA-BP-4163 TCGA-BP-4167 
       18.87        29.06        23.31         7.43        93.34        89.36 
TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 
       63.25        73.22        14.17        65.69        54.61 

$subtype3
TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 TCGA-A3-3326 
       47.21        49.58        48.56        38.99        24.69        37.38 
TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 TCGA-A3-3352 
       23.21        48.82        31.04        45.53        29.92        18.44 
TCGA-A3-3359 TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3372 TCGA-A3-3380 TCGA-A3-3383 
       42.28        51.25        28.67        24.16        18.64        28.31 
TCGA-AK-3444 TCGA-AK-3455 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4102 TCGA-B8-4151 
       48.36        22.45         6.38         3.62         0.49         9.17 
TCGA-B8-4154 TCGA-B8-4619 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4164 TCGA-CJ-4634 
        8.38         0.62        90.28       101.06        32.61        59.84 
TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 
       75.88        58.92        11.05 

subtype1 subtype2 subtype3 
    1.32     0.53     0.49 
subtype1 subtype2 subtype3 
   84.36    93.34   101.06 
subtype1 subtype2 subtype3 
   24.16    36.82    31.04 
[1] "1.3 - 84.4 (24.2)"  "0.5 - 93.3 (36.8)"  "0.5 - 101.1 (31.0)"
 [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[25] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[43] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[49] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[25] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[43] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[49] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [1] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [7] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[13] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[25] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[37] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[43] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[49] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[55] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[61] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[67] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
D2V2, continuous
D2V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5   10
  subtype2    9   14
  subtype3   15   19
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        5        9       15
  MALE         10       14       19
D2V4, continuous
[1] "Remove cluster labels:" "subtype2"              
clus
subtype2 
       1 
character(0)
D2V5, multiclass
D2V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    0
  subtype2   11    3
  subtype3   17    0
   clus
vv  subtype1 subtype2 subtype3
  0        7       11       17
  1        0        3        0
D2V7, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15    0
  subtype2   19    4
  subtype3   33    1
    clus
vv   subtype1 subtype2 subtype3
  M0       15       19       33
  M1        0        4        1
D2V8, multiclass
D2V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   14
  subtype2    0   23
  subtype3    0   34
     clus
vv    subtype1 subtype2 subtype3
  NO         1        0        0
  YES       14       23       34

Clustering(3) Variable = METHLYATION_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 37 41
  subtype2 66 18
  subtype3 50  9
  subtype4 33 27
subtype1 subtype2 subtype3 subtype4 
      78       84       59       60 
subtype1 subtype2 subtype3 subtype4 
      41       18        9       27 
$subtype1
TCGA-A3-3357 TCGA-A3-3367 TCGA-A3-3387 TCGA-AK-3434 TCGA-AK-3445 TCGA-B0-4688 
       46.85        34.65        20.25        68.58        42.05         3.22 
TCGA-B0-4691 TCGA-B0-4693 TCGA-B0-4696 TCGA-B0-4701 TCGA-B0-4707 TCGA-B0-4710 
        4.57         2.53        28.47         6.84        19.69         0.16 
TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4718 TCGA-B0-4810 TCGA-B0-4813 TCGA-B0-4814 
       43.96         6.61         7.04         8.75         0.59         1.55 
TCGA-B0-4821 TCGA-B0-4822 TCGA-B0-4827 TCGA-B0-4828 TCGA-B0-4843 TCGA-B0-4844 
       40.41        36.53        29.06        10.09        10.52        10.29 
TCGA-B0-4845 TCGA-B0-4848 TCGA-B0-5094 TCGA-B0-5097 TCGA-B0-5099 TCGA-B0-5107 
       65.26        29.00        10.95         4.96        15.95        30.48 
TCGA-B0-5116 TCGA-B0-5402 TCGA-B0-5694 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5701 
        3.39         0.33        15.42        31.04        71.70        41.95 
TCGA-B0-5706 TCGA-B0-5712 TCGA-B4-5838 TCGA-B8-4153 TCGA-B8-4622 TCGA-BP-5010 
       79.36        80.15         5.46        13.28         5.95        28.83 
TCGA-BP-5169 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5189 TCGA-BP-5198 TCGA-BP-5201 
        6.31        62.86        62.20        27.02        19.82        31.27 
TCGA-CJ-4902 TCGA-CJ-4912 TCGA-CJ-4913 TCGA-CJ-4920 TCGA-CJ-5671 TCGA-CJ-5675 
       49.94        54.44        38.56         4.57        63.85        79.86 
TCGA-CJ-5676 TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5682 
       84.66        25.71        18.84        22.29        25.25        61.91 
TCGA-CJ-5689 TCGA-CJ-6027 TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5584 TCGA-CW-5590 
        0.20        60.99         7.36        64.57         5.39        35.34 
TCGA-CW-5591 TCGA-CW-6090 TCGA-CZ-4866 TCGA-CZ-5456 TCGA-CZ-5460 TCGA-CZ-5461 
       74.63        75.88        58.13        51.22        47.01        10.85 
TCGA-CZ-5465 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5985 TCGA-CZ-5987 TCGA-EU-5907 
       45.27         1.94        31.07        53.56        14.30         4.14 

$subtype2
TCGA-A3-3358 TCGA-A3-3370 TCGA-A3-3373 TCGA-A3-3385 TCGA-AK-3428 TCGA-AK-3431 
       42.97        25.51        10.98        23.87        73.08        60.92 
TCGA-AK-3458 TCGA-AK-3460 TCGA-AK-3461 TCGA-B0-4706 TCGA-B0-4714 TCGA-B0-4811 
       38.40        31.27        28.04         0.85         0.10        39.32 
TCGA-B0-4818 TCGA-B0-4823 TCGA-B0-4824 TCGA-B0-4841 TCGA-B0-4846 TCGA-B0-4847 
       14.01        14.93        48.10         4.57        39.42        26.04 
TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 
        2.27        35.47        90.44        18.41         0.72         2.96 
TCGA-B0-5119 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5690 TCGA-B0-5693 TCGA-B0-5695 
        1.58         6.12         6.25        71.67        60.89        34.26 
TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5707 TCGA-B0-5710 
       79.73        12.33         8.61       109.64        85.22        31.46 
TCGA-B0-5713 TCGA-B2-4101 TCGA-B2-5639 TCGA-B4-5377 TCGA-B4-5836 TCGA-B4-5844 
       61.28         2.96         6.28         9.57         4.64         0.23 
TCGA-B8-4146 TCGA-BP-4801 TCGA-BP-4993 TCGA-BP-5168 TCGA-BP-5173 TCGA-BP-5174 
       16.80        36.95         5.79        48.10         1.78        74.20 
TCGA-BP-5176 TCGA-BP-5183 TCGA-BP-5184 TCGA-BP-5185 TCGA-BP-5186 TCGA-BP-5190 
       52.27        36.23        37.25        37.22        22.78        33.21 
TCGA-BP-5192 TCGA-BP-5200 TCGA-BP-5202 TCGA-CJ-4897 TCGA-CJ-4903 TCGA-CJ-4904 
       23.47        28.96         0.95        59.44        51.25        58.92 
TCGA-CJ-4905 TCGA-CJ-5683 TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5585 TCGA-CW-5589 
       49.15        62.10        83.77        92.02        85.78        78.15 
TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4864 
       75.98        79.89        25.45         0.59        58.75        93.04 
TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5454 TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5982 
       54.84         0.82        23.74        18.44        50.86        67.13 
TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5566 TCGA-DV-5573 TCGA-EU-5906 
       12.26        52.57        43.69        45.96        37.15         6.77 

$subtype3
TCGA-A3-3376 TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3450 TCGA-AK-3453 TCGA-AK-3454 
       35.18        72.07        57.34        49.28        39.12        28.70 
TCGA-B0-4699 TCGA-B0-4945 TCGA-B0-5083 TCGA-B0-5100 TCGA-B0-5102 TCGA-B0-5106 
        3.58        70.52        15.29        62.89        90.84        52.50 
TCGA-B0-5120 TCGA-B0-5691 TCGA-B0-5692 TCGA-B0-5702 TCGA-B0-5711 TCGA-B0-5812 
        1.81        91.43        48.89        38.07        83.93        76.41 
TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5636 TCGA-B4-5378 TCGA-B4-5834 TCGA-B4-5843 
        7.04        10.36         8.48         5.75         1.25         0.36 
TCGA-B8-5159 TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5552 
        4.37         0.26         8.15         0.46         6.38         7.20 
TCGA-B8-5553 TCGA-BP-4177 TCGA-BP-4760 TCGA-BP-4782 TCGA-BP-4795 TCGA-BP-5177 
        0.46        54.90        73.94        11.64        20.38         9.63 
TCGA-BP-5181 TCGA-BP-5194 TCGA-BP-5199 TCGA-CJ-4907 TCGA-CJ-4908 TCGA-CJ-5681 
       49.15        13.41        44.52        49.25        50.30        18.12 
TCGA-CJ-5684 TCGA-CW-5583 TCGA-CW-5587 TCGA-CW-5588 TCGA-CZ-5458 TCGA-CZ-5459 
       73.32        81.83        73.18        66.28        51.22        49.81 
TCGA-CZ-5463 TCGA-CZ-5464 TCGA-CZ-5467 TCGA-CZ-5984 TCGA-CZ-5988 TCGA-DV-5567 
       21.76        49.05         2.40        49.02        22.78        29.88 
TCGA-DV-5569 TCGA-DV-5575 TCGA-DV-5576 TCGA-EU-5904 TCGA-EU-5905 
       11.67        33.04        23.90        18.08         3.88 

$subtype4
TCGA-AK-3425 TCGA-B0-4690 TCGA-B0-4694 TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4700 
      109.91         1.41         3.48        18.97         1.38        65.06 
TCGA-B0-4703 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4842 
        5.98        49.02        35.54        27.88         6.02        53.79 
TCGA-B0-5080 TCGA-B0-5092 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5098 TCGA-B0-5108 
        7.30        15.09         8.05         2.20        52.08         5.33 
TCGA-B0-5109 TCGA-B0-5400 TCGA-B0-5697 TCGA-B0-5709 TCGA-B2-5641 TCGA-B4-5832 
       19.27        22.26        37.32        77.49         5.52         0.23 
TCGA-B4-5835 TCGA-B8-4621 TCGA-B8-5158 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5164 
        0.53         7.07         2.96         0.72         0.13         0.76 
TCGA-B8-5550 TCGA-B8-5551 TCGA-BP-4770 TCGA-BP-5170 TCGA-BP-5175 TCGA-BP-5182 
        6.48         0.49        10.82        79.27        30.64        38.30 
TCGA-BP-5187 TCGA-BP-5191 TCGA-BP-5195 TCGA-BP-5196 TCGA-CJ-4869 TCGA-CJ-4882 
       13.35        31.76        24.59        33.47        83.97        61.91 
TCGA-CJ-4901 TCGA-CJ-4916 TCGA-CJ-4918 TCGA-CJ-4923 TCGA-CJ-5672 TCGA-CJ-5686 
       47.67        45.11         3.02        18.81        72.00        67.00 
TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CJ-6031 TCGA-CW-6087 TCGA-CW-6097 TCGA-CZ-4863 
       53.42        75.55        62.63         1.35        18.74        55.56 
TCGA-CZ-4865 TCGA-CZ-5452 TCGA-CZ-5462 TCGA-CZ-5466 TCGA-DV-5568 TCGA-DV-5574 
        5.42        51.16        10.22        22.52        12.16        23.77 

subtype1 subtype2 subtype3 subtype4 
    0.16     0.10     0.26     0.13 
subtype1 subtype2 subtype3 subtype4 
   84.66   109.64    91.43   109.91 
subtype1 subtype2 subtype3 subtype4 
  27.745   34.865   29.880   19.120 
[1] "0.2 - 84.7 (27.7)"  "0.1 - 109.6 (34.9)" "0.3 - 91.4 (29.9)" 
[4] "0.1 - 109.9 (19.1)"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
  [7] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype1"
 [25] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
 [31] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
 [49] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
 [73] "subtype1" "subtype4" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype4" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype4" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype4" "subtype2" "subtype3" "subtype4" "subtype3" "subtype4"
[127] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[133] "subtype4" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[139] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[145] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype2"
[163] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype2"
[175] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype1"
[181] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
[187] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype3" "subtype3" "subtype1" "subtype1" "subtype4" "subtype4"
[199] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[217] "subtype4" "subtype4" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[235] "subtype4" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[241] "subtype4" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[253] "subtype1" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
[259] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[271] "subtype3" "subtype4" "subtype3" "subtype2" "subtype4" "subtype3"
[277] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
  [7] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype1"
 [25] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
 [31] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
 [49] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
 [73] "subtype1" "subtype4" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype4" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype4" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype4" "subtype2" "subtype3" "subtype4" "subtype3" "subtype4"
[127] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[133] "subtype4" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[139] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[145] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype2"
[163] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype2"
[175] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype1"
[181] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
[187] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype3" "subtype3" "subtype1" "subtype1" "subtype4" "subtype4"
[199] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[217] "subtype4" "subtype4" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[235] "subtype4" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[241] "subtype4" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[253] "subtype1" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
[259] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[271] "subtype3" "subtype4" "subtype3" "subtype2" "subtype4" "subtype3"
[277] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
  [7] "subtype2" "subtype1" "subtype4" "subtype2" "subtype2" "subtype3"
 [13] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype1"
 [25] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
 [31] "subtype4" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
 [37] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype4" "subtype4" "subtype4" "subtype2"
 [49] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [55] "subtype1" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype4" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
 [73] "subtype1" "subtype4" "subtype1" "subtype3" "subtype3" "subtype2"
 [79] "subtype3" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [91] "subtype4" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [97] "subtype1" "subtype2" "subtype1" "subtype4" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[109] "subtype2" "subtype4" "subtype2" "subtype3" "subtype1" "subtype2"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[121] "subtype4" "subtype2" "subtype3" "subtype4" "subtype3" "subtype4"
[127] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[133] "subtype4" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[139] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[145] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype4"
[151] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[157] "subtype1" "subtype4" "subtype2" "subtype2" "subtype4" "subtype2"
[163] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype2"
[175] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype1"
[181] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
[187] "subtype2" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[193] "subtype3" "subtype3" "subtype1" "subtype1" "subtype4" "subtype4"
[199] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
[205] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[211] "subtype2" "subtype3" "subtype4" "subtype1" "subtype1" "subtype4"
[217] "subtype4" "subtype4" "subtype2" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype2"
[235] "subtype4" "subtype2" "subtype2" "subtype2" "subtype4" "subtype2"
[241] "subtype4" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[247] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[253] "subtype1" "subtype4" "subtype3" "subtype3" "subtype1" "subtype4"
[259] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype1"
[265] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[271] "subtype3" "subtype4" "subtype3" "subtype2" "subtype4" "subtype3"
[277] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
D3V2, continuous
D3V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   60
  subtype2   32   52
  subtype3   28   32
  subtype4   17   43
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       19       32       28       17
  MALE         60       52       32       43
D3V4, continuous
D3V5, multiclass
D3V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   35    3
  subtype2   38    1
  subtype3   27    0
  subtype4   27    5
   clus
vv  subtype1 subtype2 subtype3 subtype4
  0       35       38       27       27
  1        3        1        0        5
D3V7, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   53   26
  subtype2   74   10
  subtype3   57    3
  subtype4   48   12
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0       53       74       57       48
  M1       26       10        3       12
D3V8, multiclass
D3V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   77
  subtype2    1   83
  subtype3    1   59
  subtype4    0   60
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         2        1        1        0
  YES       77       83       59       60

Clustering(4) Variable = MRNASEQ_CNMF
D4V1, survival
          sevent
clus2        0   1
  subtype1 153  45
  subtype2  70  29
  subtype3  90  80
subtype1 subtype2 subtype3 
     198       99      170 
subtype1 subtype2 subtype3 
      45       29       80 
$subtype1
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3311 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 
       36.82        47.21        39.12        49.58        48.56        38.99 
TCGA-A3-3325 TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3351 TCGA-A3-3352 
       24.69        23.21        48.82        31.04        29.92        18.44 
TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3372 TCGA-A3-3373 
       42.97        42.28        34.65        25.51        24.16        10.98 
TCGA-A3-3380 TCGA-A3-3385 TCGA-AK-3425 TCGA-AK-3429 TCGA-AK-3434 TCGA-AK-3450 
       18.64        23.87       109.91        66.31        68.58        49.28 
TCGA-AK-3453 TCGA-AK-3455 TCGA-AK-3458 TCGA-AK-3460 TCGA-B0-4693 TCGA-B0-4701 
       39.12        22.45        38.40        31.27         2.53         6.84 
TCGA-B0-4714 TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4824 TCGA-B0-4828 TCGA-B0-4833 
        0.10         1.55        14.01        48.10        10.09        78.41 
TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 
       23.93        53.85        65.26        39.42        26.04         2.27 
TCGA-B0-4852 TCGA-B0-4945 TCGA-B0-5077 TCGA-B0-5085 TCGA-B0-5088 TCGA-B0-5099 
       35.47        70.52        42.44        25.28        14.24        15.95 
TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5119 
       90.84        90.44        18.41         0.72         2.96         1.58 
TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 
        6.12         6.25         0.33        71.67        48.89        60.89 
TCGA-B0-5695 TCGA-B0-5696 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5703 TCGA-B0-5705 
       34.26        31.04        71.70        79.73         8.61       109.64 
TCGA-B0-5710 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 TCGA-B2-4099 
       31.46        83.93        80.15        61.28         6.38         3.62 
TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5635 TCGA-B2-5639 TCGA-B4-5377 TCGA-B4-5834 
        2.96         0.49        10.36         6.28         9.57         1.25 
TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 
        4.64         0.36         0.23        16.80        12.46         9.17 
TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5549 
       13.28         8.38         5.95         4.37         0.76         6.38 
TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4160 TCGA-BP-4162 TCGA-BP-4164 TCGA-BP-4165 
        0.46       111.02        94.72       101.06        32.61        96.85 
TCGA-BP-4170 TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4330 TCGA-BP-4335 TCGA-BP-4340 
       77.03        97.45         3.55        62.07        15.12        18.48 
TCGA-BP-4341 TCGA-BP-4346 TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4351 TCGA-BP-4756 
       52.24        49.08        44.94        12.23        31.86        12.30 
TCGA-BP-4758 TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4774 TCGA-BP-4775 
       72.59        71.80        48.03        13.15        61.94        60.56 
TCGA-BP-4777 TCGA-BP-4782 TCGA-BP-4807 TCGA-BP-4961 TCGA-BP-4964 TCGA-BP-4965 
       56.91        11.64         6.94        63.62        61.22        61.51 
TCGA-BP-4968 TCGA-BP-4969 TCGA-BP-4972 TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 
       57.37        58.98        49.35        45.50         7.23        47.11 
TCGA-BP-4976 TCGA-BP-4981 TCGA-BP-4982 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4993 
       53.65        36.07        33.30        36.95        34.32         5.79 
TCGA-BP-4999 TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 TCGA-BP-5168 
       41.62        38.70        37.02        27.62        37.48        48.10 
TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5181 TCGA-BP-5183 TCGA-BP-5190 
        1.78        74.20        52.27        49.15        36.23        33.21 
TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5200 TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4634 
       23.47        13.41        28.96        31.27         0.95        59.84 
TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 TCGA-CJ-4874 TCGA-CJ-4875 TCGA-CJ-4876 
       75.88        58.92        11.05        75.06        77.36        64.27 
TCGA-CJ-4878 TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4892 TCGA-CJ-4893 
       71.87        69.86        64.14        21.34        49.97        24.62 
TCGA-CJ-4894 TCGA-CJ-4897 TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4908 TCGA-CJ-4916 
       27.65        59.44        51.25        58.92        50.30        45.11 
TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5684 TCGA-CJ-5686 TCGA-CJ-6032 TCGA-CW-5580 
       72.00        79.86        73.32        67.00        83.77        64.57 
TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-6088 TCGA-CW-6093 
       92.02         5.39        85.78        73.18        75.98        79.89 
TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-5453 
       25.45         0.59        58.75        55.56        93.04         0.82 
TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5460 TCGA-CZ-5463 TCGA-CZ-5465 
       18.44        50.86        51.22        47.01        21.76        45.27 
TCGA-CZ-5982 TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5566 TCGA-DV-5569 TCGA-DV-5575 
       67.13        12.26        52.57        45.96        11.67        33.04 

$subtype2
TCGA-A3-3308 TCGA-A3-3313 TCGA-A3-3317 TCGA-A3-3328 TCGA-A3-3349 TCGA-A3-3362 
        0.53        24.16        49.02        25.81        45.53        51.25 
TCGA-A3-3363 TCGA-A3-3365 TCGA-A3-3374 TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3431 
       10.49        28.67        43.17        84.36        73.08        60.92 
TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3456 TCGA-AK-3461 TCGA-AK-3465 
       72.07        57.34        46.78         1.51        28.04        12.13 
TCGA-AS-3777 TCGA-B0-4688 TCGA-B0-4696 TCGA-B0-4699 TCGA-B0-4703 TCGA-B0-4706 
        1.32         3.22        28.47         3.58         5.98         0.85 
TCGA-B0-4811 TCGA-B0-4823 TCGA-B0-4834 TCGA-B0-4841 TCGA-B0-5080 TCGA-B0-5083 
       39.32        14.93        68.71         4.57         7.30        15.29 
TCGA-B0-5100 TCGA-B0-5109 TCGA-B0-5120 TCGA-B0-5691 TCGA-B0-5697 TCGA-B0-5709 
       62.89        19.27         1.81        91.43        37.32        77.49 
TCGA-B0-5812 TCGA-B2-3923 TCGA-B2-5636 TCGA-B4-5378 TCGA-B4-5838 TCGA-B8-4619 
       76.41         5.85         8.48         5.75         5.46         0.62 
TCGA-B8-5165 TCGA-B8-5545 TCGA-B8-5546 TCGA-B8-5552 TCGA-BP-4159 TCGA-BP-4163 
        0.26         8.15         0.46         7.20        85.48        93.34 
TCGA-BP-4166 TCGA-BP-4169 TCGA-BP-4177 TCGA-BP-4329 TCGA-BP-4332 TCGA-BP-4334 
        0.43        23.05        54.90        27.78        37.25        21.21 
TCGA-BP-4337 TCGA-BP-4344 TCGA-BP-4345 TCGA-BP-4355 TCGA-BP-4759 TCGA-BP-4760 
        0.07        54.77        49.84        31.33        76.41        73.94 
TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4784 TCGA-BP-4789 
       44.15        41.75        61.68        10.82        60.95        48.95 
TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4801 TCGA-BP-4970 TCGA-BP-4994 TCGA-BP-4995 
       36.53        20.38        36.95        14.20        42.97        45.07 
TCGA-BP-4998 TCGA-BP-5008 TCGA-BP-5010 TCGA-BP-5177 TCGA-BP-5182 TCGA-BP-5187 
       30.61        35.21        28.83         9.63        38.30        13.35 
TCGA-BP-5199 TCGA-CJ-4872 TCGA-CJ-4889 TCGA-CJ-4899 TCGA-CJ-4905 TCGA-CJ-4907 
       44.52        47.18        63.95        50.20        49.15        49.25 
TCGA-CJ-4918 TCGA-CJ-5680 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5683 TCGA-CJ-5689 
        3.02        25.25        18.12        61.91        62.10         0.20 
TCGA-CW-5583 TCGA-CW-5589 TCGA-CW-5591 TCGA-CZ-5467 TCGA-DV-5565 TCGA-DV-5567 
       81.83        78.15        74.63         2.40        43.69        29.88 
TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5576 
       37.15        23.77        23.90 

$subtype3
TCGA-A3-3316 TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3335 TCGA-A3-3347 TCGA-A3-3357 
       49.08        37.15        36.33        21.83        36.07        46.85 
TCGA-A3-3378 TCGA-A3-3382 TCGA-A3-3387 TCGA-AK-3426 TCGA-AK-3436 TCGA-AK-3445 
       20.71        18.87        20.25        29.06        67.17        42.05 
TCGA-AK-3451 TCGA-AK-3454 TCGA-B0-4690 TCGA-B0-4694 TCGA-B0-4697 TCGA-B0-4698 
       48.69        28.70         1.41         3.48        18.97         1.38 
TCGA-B0-4700 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4718 TCGA-B0-4810 
       65.06        19.69        43.96         6.61         7.04         8.75 
TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4821 
        0.59        49.02        35.54        27.88         6.02        40.41 
TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4842 TCGA-B0-4843 TCGA-B0-4844 
       29.06        40.70        42.48        53.79        10.52        10.29 
TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5081 TCGA-B0-5084 TCGA-B0-5092 TCGA-B0-5094 
       29.00        19.99         7.66         7.27        15.09        10.95 
TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 TCGA-B0-5098 TCGA-B0-5106 TCGA-B0-5107 
        8.05         2.20         4.96        52.08        52.50        30.48 
TCGA-B0-5108 TCGA-B0-5116 TCGA-B0-5400 TCGA-B0-5694 TCGA-B0-5701 TCGA-B0-5706 
        5.33         3.39        22.26        15.42        41.95        79.36 
TCGA-B2-4098 TCGA-B2-5633 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5835 TCGA-B8-4143 
        1.64         7.04         5.52         0.23         0.53        23.31 
TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-5158 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5550 
        7.43         7.07         2.96         0.72         0.13         6.48 
TCGA-B8-5551 TCGA-BP-4161 TCGA-BP-4167 TCGA-BP-4173 TCGA-BP-4174 TCGA-BP-4176 
        0.49        90.28        89.36        62.24        61.78        64.27 
TCGA-BP-4326 TCGA-BP-4338 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4352 TCGA-BP-4353 
       53.39        90.28        74.17        62.86        11.31        12.33 
TCGA-BP-4354 TCGA-BP-4761 TCGA-BP-4771 TCGA-BP-4781 TCGA-BP-4787 TCGA-BP-4797 
       33.99         5.98         5.29        68.38        15.75        36.39 
TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4803 TCGA-BP-4804 TCGA-BP-4959 TCGA-BP-4960 
       10.98        37.25         6.67        47.97        87.45        71.41 
TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4967 TCGA-BP-4971 TCGA-BP-4977 TCGA-BP-4983 
       58.68        60.30         6.71        48.89        14.93        46.42 
TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4992 TCGA-BP-5000 
       31.27        25.81        27.19         3.85        16.44        18.51 
TCGA-BP-5009 TCGA-BP-5169 TCGA-BP-5170 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 
       35.90         6.31        79.27        30.64        62.86        62.20 
TCGA-BP-5189 TCGA-BP-5191 TCGA-BP-5195 TCGA-BP-5196 TCGA-BP-5198 TCGA-CJ-4635 
       27.02        31.76        24.59        33.47        19.82        46.55 
TCGA-CJ-4636 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4868 
       63.25        73.22        14.17        65.69        54.61        21.21 
TCGA-CJ-4869 TCGA-CJ-4871 TCGA-CJ-4873 TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4884 
       83.97        79.63        74.24        66.18        61.91        32.65 
TCGA-CJ-4888 TCGA-CJ-4890 TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 
       51.48        68.55        26.89        39.45        41.88        47.67 
TCGA-CJ-4902 TCGA-CJ-4912 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 
       49.94        54.44         4.57        18.81        63.85        84.66 
TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 
       25.71        18.84        22.29        60.99        53.42        75.55 
TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5590 TCGA-CW-6087 TCGA-CW-6090 TCGA-CW-6097 
       62.63         7.36        35.34         1.35        75.88        18.74 
TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-4861 TCGA-CZ-4862 
       46.16        47.08        63.88         6.74        14.63        60.59 
TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5452 TCGA-CZ-5454 TCGA-CZ-5461 TCGA-CZ-5462 
        5.42        58.13        51.16        23.74        10.85        10.22 
TCGA-CZ-5464 TCGA-CZ-5468 TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5987 
       49.05         1.94        31.07        49.02        53.56        14.30 
TCGA-CZ-5988 TCGA-DV-5568 
       22.78        12.16 

subtype1 subtype2 subtype3 
    0.10     0.07     0.13 
subtype1 subtype2 subtype3 
  111.02    93.34    90.28 
subtype1 subtype2 subtype3 
   37.94    31.33    29.77 
[1] "0.1 - 111.0 (37.9)" "0.1 - 93.3 (31.3)"  "0.1 - 90.3 (29.8)" 
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
  [7] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [97] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[217] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[223] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[259] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[295] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[301] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[319] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[331] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[337] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[343] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[349] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[355] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[361] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[367] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[373] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[379] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[385] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[391] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[403] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[415] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[421] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[433] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[439] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[445] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[451] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[457] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[463] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
  [7] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [97] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[217] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[223] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[259] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[295] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[301] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[319] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[331] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[337] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[343] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[349] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[355] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[361] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[367] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[373] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[379] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[385] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[391] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[403] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[415] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[421] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[433] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[439] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[445] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[451] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[457] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[463] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
  [7] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [25] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [37] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [49] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
 [67] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [79] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
 [85] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [97] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[127] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[133] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[151] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[157] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[163] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[169] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[175] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype1"
[181] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[193] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[211] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[217] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[223] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[235] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[241] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[247] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[253] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[259] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[289] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[295] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[301] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[307] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[313] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[319] "subtype1" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[325] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[331] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[337] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[343] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[349] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
[355] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[361] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[367] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[373] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[379] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[385] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[391] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[403] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[415] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[421] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[427] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[433] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[439] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[445] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[451] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[457] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[463] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
D4V2, continuous
D4V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   92  106
  subtype2   30   70
  subtype3   40  131
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       92       30       40
  MALE        106       70      131
D4V4, continuous
D4V5, multiclass
D4V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   96    2
  subtype2   49    3
  subtype3   79   12
   clus
vv  subtype1 subtype2 subtype3
  0       96       49       79
  1        2        3       12
D4V7, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  175   23
  subtype2   90   10
  subtype3  128   43
    clus
vv   subtype1 subtype2 subtype3
  M0      175       90      128
  M1       23       10       43
D4V8, multiclass
D4V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2  196
  subtype2    1   99
  subtype3    2  169
     clus
vv    subtype1 subtype2 subtype3
  NO         2        1        2
  YES      196       99      169

Clustering(5) Variable = MRNASEQ_CHIERARCHICAL
D5V1, survival
          sevent
clus2        0   1
  subtype1  41  10
  subtype2 171  49
  subtype3 101  95
subtype1 subtype2 subtype3 
      51      220      196 
subtype1 subtype2 subtype3 
      10       49       95 
$subtype1
TCGA-A3-3313 TCGA-A3-3328 TCGA-A3-3362 TCGA-A3-3363 TCGA-A3-3374 TCGA-AK-3427 
       24.16        25.81        51.25        10.49        43.17        84.36 
TCGA-AK-3433 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3456 TCGA-AK-3465 TCGA-AS-3777 
       72.07        57.34        46.78         1.51        12.13         1.32 
TCGA-B0-4699 TCGA-B0-4834 TCGA-B0-5083 TCGA-B0-5100 TCGA-B0-5691 TCGA-B0-5695 
        3.58        68.71        15.29        62.89        91.43        34.26 
TCGA-B0-5697 TCGA-B2-3923 TCGA-B2-4098 TCGA-B2-5636 TCGA-B2-5639 TCGA-B4-5378 
       37.32         5.85         1.64         8.48         6.28         5.75 
TCGA-B4-5835 TCGA-B8-4619 TCGA-B8-4621 TCGA-B8-5165 TCGA-B8-5546 TCGA-BP-4177 
        0.53         0.62         7.07         0.26         0.46        54.90 
TCGA-BP-4334 TCGA-BP-4756 TCGA-BP-4760 TCGA-BP-4769 TCGA-BP-4784 TCGA-BP-4795 
       21.21        12.30        73.94        61.68        60.95        20.38 
TCGA-BP-4994 TCGA-BP-4995 TCGA-CJ-5681 TCGA-CJ-5683 TCGA-CJ-5689 TCGA-CW-5581 
       42.97        45.07        18.12        62.10         0.20        92.02 
TCGA-CW-5584 TCGA-CW-5589 TCGA-CW-5591 TCGA-DV-5566 TCGA-DV-5567 TCGA-DV-5569 
        5.39        78.15        74.63        45.96        29.88        11.67 
TCGA-DV-5573 TCGA-DV-5574 TCGA-DV-5576 
       37.15        23.77        23.90 

$subtype2
TCGA-A3-3306 TCGA-A3-3307 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3324 TCGA-A3-3325 
       36.82        47.21        49.58        48.56        38.99        24.69 
TCGA-A3-3329 TCGA-A3-3331 TCGA-A3-3343 TCGA-A3-3349 TCGA-A3-3351 TCGA-A3-3352 
       23.21        48.82        31.04        45.53        29.92        18.44 
TCGA-A3-3358 TCGA-A3-3359 TCGA-A3-3365 TCGA-A3-3367 TCGA-A3-3370 TCGA-A3-3372 
       42.97        42.28        28.67        34.65        25.51        24.16 
TCGA-A3-3373 TCGA-A3-3380 TCGA-A3-3385 TCGA-AK-3425 TCGA-AK-3428 TCGA-AK-3429 
       10.98        18.64        23.87       109.91        73.08        66.31 
TCGA-AK-3434 TCGA-AK-3450 TCGA-AK-3453 TCGA-AK-3455 TCGA-AK-3458 TCGA-AK-3460 
       68.58        49.28        39.12        22.45        38.40        31.27 
TCGA-AK-3461 TCGA-B0-4693 TCGA-B0-4701 TCGA-B0-4706 TCGA-B0-4714 TCGA-B0-4718 
       28.04         2.53         6.84         0.85         0.10         7.04 
TCGA-B0-4811 TCGA-B0-4814 TCGA-B0-4818 TCGA-B0-4823 TCGA-B0-4824 TCGA-B0-4828 
       39.32         1.55        14.01        14.93        48.10        10.09 
TCGA-B0-4833 TCGA-B0-4838 TCGA-B0-4841 TCGA-B0-4845 TCGA-B0-4846 TCGA-B0-4847 
       78.41        23.93         4.57        65.26        39.42        26.04 
TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-4945 TCGA-B0-5077 TCGA-B0-5085 TCGA-B0-5099 
        2.27        35.47        70.52        42.44        25.28        15.95 
TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5110 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5119 
       90.84        90.44        18.41         0.72         2.96         1.58 
TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5693 TCGA-B0-5696 
        6.12         6.25        71.67        48.89        60.89        31.04 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5703 TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5711 
       71.70        79.73         8.61       109.64        31.46        83.93 
TCGA-B0-5712 TCGA-B0-5713 TCGA-B0-5812 TCGA-B2-3924 TCGA-B2-4099 TCGA-B2-4101 
       80.15        61.28        76.41         6.38         3.62         2.96 
TCGA-B2-4102 TCGA-B4-5377 TCGA-B4-5834 TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 
        0.49         9.57         1.25         4.64         0.36         0.23 
TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 TCGA-B8-4154 TCGA-B8-4622 
       16.80        12.46         9.17        13.28         8.38         5.95 
TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5545 TCGA-B8-5552 TCGA-B8-5553 TCGA-BP-4158 
        4.37         0.76         8.15         7.20         0.46       111.02 
TCGA-BP-4159 TCGA-BP-4160 TCGA-BP-4161 TCGA-BP-4162 TCGA-BP-4164 TCGA-BP-4165 
       85.48        94.72        90.28       101.06        32.61        96.85 
TCGA-BP-4170 TCGA-BP-4173 TCGA-BP-4174 TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4330 
       77.03        62.24        61.78        97.45         3.55        62.07 
TCGA-BP-4332 TCGA-BP-4335 TCGA-BP-4340 TCGA-BP-4341 TCGA-BP-4344 TCGA-BP-4346 
       37.25        15.12        18.48        52.24        54.77        49.08 
TCGA-BP-4347 TCGA-BP-4349 TCGA-BP-4351 TCGA-BP-4355 TCGA-BP-4758 TCGA-BP-4762 
       44.94        12.23        31.86        31.33        72.59        44.15 
TCGA-BP-4765 TCGA-BP-4766 TCGA-BP-4768 TCGA-BP-4774 TCGA-BP-4775 TCGA-BP-4777 
       71.80        48.03        13.15        61.94        60.56        56.91 
TCGA-BP-4789 TCGA-BP-4790 TCGA-BP-4801 TCGA-BP-4807 TCGA-BP-4961 TCGA-BP-4963 
       48.95        36.53        36.95         6.94        63.62        60.30 
TCGA-BP-4964 TCGA-BP-4965 TCGA-BP-4968 TCGA-BP-4969 TCGA-BP-4970 TCGA-BP-4972 
       61.22        61.51        57.37        58.98        14.20        49.35 
TCGA-BP-4973 TCGA-BP-4974 TCGA-BP-4975 TCGA-BP-4976 TCGA-BP-4981 TCGA-BP-4982 
       45.50         7.23        47.11        53.65        36.07        33.30 
TCGA-BP-4987 TCGA-BP-4989 TCGA-BP-4991 TCGA-BP-4993 TCGA-BP-4998 TCGA-BP-4999 
       36.95         3.85        34.32         5.79        30.61        41.62 
TCGA-BP-5001 TCGA-BP-5004 TCGA-BP-5006 TCGA-BP-5007 TCGA-BP-5008 TCGA-BP-5168 
       38.70        37.02        27.62        37.48        35.21        48.10 
TCGA-BP-5173 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5181 TCGA-BP-5182 TCGA-BP-5183 
        1.78        52.27         9.63        49.15        38.30        36.23 
TCGA-BP-5190 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5200 TCGA-BP-5201 TCGA-BP-5202 
       33.21        23.47        13.41        28.96        31.27         0.95 
TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 TCGA-CJ-4874 TCGA-CJ-4875 
       59.84        75.88        58.92        11.05        75.06        77.36 
TCGA-CJ-4876 TCGA-CJ-4878 TCGA-CJ-4885 TCGA-CJ-4886 TCGA-CJ-4887 TCGA-CJ-4889 
       64.27        71.87        69.86        64.14        21.34        63.95 
TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 TCGA-CJ-4899 TCGA-CJ-4902 
       49.97        24.62        27.65        59.44        50.20        49.94 
TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4908 TCGA-CJ-4916 
       51.25        58.92        49.15        49.25        50.30        45.11 
TCGA-CJ-5672 TCGA-CJ-5675 TCGA-CJ-5678 TCGA-CJ-5684 TCGA-CJ-5686 TCGA-CJ-6032 
       72.00        79.86        18.84        73.32        67.00        83.77 
TCGA-CW-5583 TCGA-CW-5585 TCGA-CW-5587 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4853 
       81.83        85.78        73.18        75.98        79.89        25.45 
TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4863 TCGA-CZ-4864 TCGA-CZ-5453 TCGA-CZ-5455 
        0.59        58.75        55.56        93.04         0.82        18.44 
TCGA-CZ-5457 TCGA-CZ-5460 TCGA-CZ-5463 TCGA-CZ-5465 TCGA-CZ-5982 TCGA-CZ-5986 
       50.86        47.01        21.76        45.27        67.13        12.26 
TCGA-CZ-5989 TCGA-DV-5565 TCGA-DV-5568 TCGA-DV-5575 
       52.57        43.69        12.16        33.04 

$subtype3
TCGA-A3-3308 TCGA-A3-3311 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3319 TCGA-A3-3323 
        0.53        39.12        49.08        49.02        37.15        36.33 
TCGA-A3-3335 TCGA-A3-3347 TCGA-A3-3357 TCGA-A3-3378 TCGA-A3-3382 TCGA-A3-3387 
       21.83        36.07        46.85        20.71        18.87        20.25 
TCGA-AK-3426 TCGA-AK-3431 TCGA-AK-3436 TCGA-AK-3445 TCGA-AK-3451 TCGA-AK-3454 
       29.06        60.92        67.17        42.05        48.69        28.70 
TCGA-B0-4688 TCGA-B0-4690 TCGA-B0-4694 TCGA-B0-4696 TCGA-B0-4697 TCGA-B0-4698 
        3.22         1.41         3.48        28.47        18.97         1.38 
TCGA-B0-4700 TCGA-B0-4703 TCGA-B0-4707 TCGA-B0-4712 TCGA-B0-4713 TCGA-B0-4810 
       65.06         5.98        19.69        43.96         6.61         8.75 
TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4816 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4821 
        0.59        49.02        35.54        27.88         6.02        40.41 
TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4839 TCGA-B0-4842 TCGA-B0-4843 
       29.06        40.70        42.48        53.85        53.79        10.52 
TCGA-B0-4844 TCGA-B0-4848 TCGA-B0-5075 TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5084 
       10.29        29.00        19.99         7.30         7.66         7.27 
TCGA-B0-5088 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 
       14.24        15.09        10.95         8.05         2.20         4.96 
TCGA-B0-5098 TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5116 
       52.08        52.50        30.48         5.33        19.27         3.39 
TCGA-B0-5120 TCGA-B0-5400 TCGA-B0-5402 TCGA-B0-5694 TCGA-B0-5701 TCGA-B0-5706 
        1.81        22.26         0.33        15.42        41.95        79.36 
TCGA-B0-5709 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5838 
       77.49         7.04        10.36         5.52         0.23         5.46 
TCGA-B8-4143 TCGA-B8-4620 TCGA-B8-5158 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5549 
       23.31         7.43         2.96         0.72         0.13         6.38 
TCGA-B8-5550 TCGA-B8-5551 TCGA-BP-4163 TCGA-BP-4166 TCGA-BP-4167 TCGA-BP-4169 
        6.48         0.49        93.34         0.43        89.36        23.05 
TCGA-BP-4176 TCGA-BP-4326 TCGA-BP-4329 TCGA-BP-4337 TCGA-BP-4338 TCGA-BP-4342 
       64.27        53.39        27.78         0.07        90.28        74.17 
TCGA-BP-4343 TCGA-BP-4345 TCGA-BP-4352 TCGA-BP-4353 TCGA-BP-4354 TCGA-BP-4759 
       62.86        49.84        11.31        12.33        33.99        76.41 
TCGA-BP-4761 TCGA-BP-4763 TCGA-BP-4770 TCGA-BP-4771 TCGA-BP-4781 TCGA-BP-4782 
        5.98        41.75        10.82         5.29        68.38        11.64 
TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4803 TCGA-BP-4804 
       15.75        36.39        10.98        37.25         6.67        47.97 
TCGA-BP-4959 TCGA-BP-4960 TCGA-BP-4962 TCGA-BP-4967 TCGA-BP-4971 TCGA-BP-4977 
       87.45        71.41        58.68         6.71        48.89        14.93 
TCGA-BP-4983 TCGA-BP-4985 TCGA-BP-4986 TCGA-BP-4988 TCGA-BP-4992 TCGA-BP-5000 
       46.42        31.27        25.81        27.19        16.44        18.51 
TCGA-BP-5009 TCGA-BP-5010 TCGA-BP-5169 TCGA-BP-5170 TCGA-BP-5174 TCGA-BP-5175 
       35.90        28.83         6.31        79.27        74.20        30.64 
TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5187 TCGA-BP-5189 TCGA-BP-5191 TCGA-BP-5195 
       62.86        62.20        13.35        27.02        31.76        24.59 
TCGA-BP-5196 TCGA-BP-5198 TCGA-BP-5199 TCGA-CJ-4635 TCGA-CJ-4636 TCGA-CJ-4637 
       33.47        19.82        44.52        46.55        63.25        73.22 
TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4868 TCGA-CJ-4869 TCGA-CJ-4871 
       14.17        65.69        54.61        21.21        83.97        79.63 
TCGA-CJ-4872 TCGA-CJ-4873 TCGA-CJ-4881 TCGA-CJ-4882 TCGA-CJ-4884 TCGA-CJ-4888 
       47.18        74.24        66.18        61.91        32.65        51.48 
TCGA-CJ-4890 TCGA-CJ-4891 TCGA-CJ-4895 TCGA-CJ-4900 TCGA-CJ-4901 TCGA-CJ-4912 
       68.55        26.89        39.45        41.88        47.67        54.44 
TCGA-CJ-4918 TCGA-CJ-4920 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5677 
        3.02         4.57        18.81        63.85        84.66        25.71 
TCGA-CJ-5679 TCGA-CJ-5680 TCGA-CJ-5682 TCGA-CJ-6027 TCGA-CJ-6028 TCGA-CJ-6030 
       22.29        25.25        61.91        60.99        53.42        75.55 
TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5580 TCGA-CW-5590 TCGA-CW-6087 TCGA-CW-6090 
       62.63         7.36        64.57        35.34         1.35        75.88 
TCGA-CW-6097 TCGA-CZ-4854 TCGA-CZ-4857 TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-4861 
       18.74        46.16        47.08        63.88         6.74        14.63 
TCGA-CZ-4862 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5452 TCGA-CZ-5454 TCGA-CZ-5458 
       60.59         5.42        58.13        51.16        23.74        51.22 
TCGA-CZ-5461 TCGA-CZ-5462 TCGA-CZ-5464 TCGA-CZ-5467 TCGA-CZ-5468 TCGA-CZ-5469 
       10.85        10.22        49.05         2.40         1.94        31.07 
TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5987 TCGA-CZ-5988 
       49.02        53.56        14.30        22.78 

subtype1 subtype2 subtype3 
    0.20     0.10     0.07 
subtype1 subtype2 subtype3 
   92.02   111.02    93.34 
subtype1 subtype2 subtype3 
  24.160   38.550   28.915 
[1] "0.2 - 92.0 (24.2)"  "0.1 - 111.0 (38.5)" "0.1 - 93.3 (28.9)" 
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[217] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[247] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[265] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[307] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[319] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[325] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[331] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[349] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[355] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[361] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[367] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[379] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[385] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[391] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[397] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[403] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[409] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[415] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[421] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[427] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[433] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[439] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[451] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[457] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[463] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[217] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[247] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[265] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[307] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[319] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[325] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[331] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[349] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[355] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[361] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[367] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[379] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[385] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[391] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[397] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[403] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[409] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[415] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[421] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[427] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[433] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[439] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[451] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[457] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[463] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
  [7] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [13] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
 [19] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [25] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [43] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
 [49] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
 [55] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [61] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [67] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [85] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
 [91] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[115] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[139] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[151] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[157] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype1"
[175] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[181] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[193] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[211] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[217] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[223] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[229] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[235] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[247] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
[259] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[265] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[271] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[277] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[283] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[307] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[313] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[319] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[325] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[331] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[349] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[355] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[361] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[367] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[373] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[379] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[385] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[391] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[397] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[403] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[409] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[415] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[421] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[427] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[433] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[439] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[445] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[451] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[457] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[463] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
D5V2, continuous
D5V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   35
  subtype2   93  128
  subtype3   52  144
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       17       93       52
  MALE         35      128      144
D5V4, continuous
D5V5, multiclass
D5V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   26    1
  subtype2  104    2
  subtype3   94   14
   clus
vv  subtype1 subtype2 subtype3
  0       26      104       94
  1        1        2       14
D5V7, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   49    3
  subtype2  197   24
  subtype3  147   49
    clus
vv   subtype1 subtype2 subtype3
  M0       49      197      147
  M1        3       24       49
D5V8, multiclass
D5V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1   51
  subtype2    2  219
  subtype3    2  194
     clus
vv    subtype1 subtype2 subtype3
  NO         1        2        2
  YES       51      219      194

Clustering(6) Variable = MIRSEQ_CNMF
D6V1, survival
          sevent
clus2        0   1
  subtype1 135  37
  subtype2  62  22
  subtype3  42  22
  subtype4  73  68
subtype1 subtype2 subtype3 subtype4 
     172       84       64      141 
subtype1 subtype2 subtype3 subtype4 
      37       22       22       68 
$subtype1
TCGA-A3-3307 TCGA-A3-3311 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3323 TCGA-A3-3324 
       47.21        39.12        49.58        48.56        36.33        38.99 
TCGA-A3-3326 TCGA-A3-3331 TCGA-A3-3351 TCGA-A3-3358 TCGA-A3-3367 TCGA-A3-3370 
       37.38        48.82        29.92        42.97        34.65        25.51 
TCGA-A3-3372 TCGA-A3-3380 TCGA-A3-3383 TCGA-A3-3385 TCGA-AK-3428 TCGA-AK-3429 
       24.16        18.64        28.31        23.87        73.08        66.31 
TCGA-AK-3434 TCGA-AK-3444 TCGA-AK-3450 TCGA-AK-3454 TCGA-AK-3455 TCGA-AK-3460 
       68.58        48.36        49.28        28.70        22.45        31.27 
TCGA-B0-4693 TCGA-B0-4706 TCGA-B0-4710 TCGA-B0-4714 TCGA-B0-4814 TCGA-B0-4818 
        2.53         0.85         0.16         0.10         1.55        14.01 
TCGA-B0-4824 TCGA-B0-4828 TCGA-B0-4833 TCGA-B0-4838 TCGA-B0-4841 TCGA-B0-4845 
       48.10        10.09        78.41        23.93         4.57        65.26 
TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-5077 TCGA-B0-5085 
       39.42        26.04         2.27        35.47        42.44        25.28 
TCGA-B0-5099 TCGA-B0-5102 TCGA-B0-5104 TCGA-B0-5106 TCGA-B0-5110 TCGA-B0-5113 
       15.95        90.84        90.44        52.50        18.41         0.72 
TCGA-B0-5116 TCGA-B0-5121 TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 
        3.39         6.12         6.25         0.33        71.67        48.89 
TCGA-B0-5693 TCGA-B0-5694 TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5700 TCGA-B0-5703 
       60.89        15.42        71.70        79.73        12.33         8.61 
TCGA-B0-5705 TCGA-B0-5711 TCGA-B0-5712 TCGA-B0-5713 TCGA-B2-3924 TCGA-B2-4099 
      109.64        83.93        80.15        61.28         6.38         3.62 
TCGA-B2-4101 TCGA-B2-4102 TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5639 TCGA-B4-5377 
        2.96         0.49         7.04        10.36         6.28         9.57 
TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4148 TCGA-B8-4151 TCGA-B8-4153 
        0.36         0.23        16.80        12.46         9.17        13.28 
TCGA-B8-4154 TCGA-B8-4622 TCGA-B8-5159 TCGA-B8-5164 TCGA-B8-5546 TCGA-B8-5549 
        8.38         5.95         4.37         0.76         0.46         6.38 
TCGA-B8-5553 TCGA-BP-4158 TCGA-BP-4159 TCGA-BP-4162 TCGA-BP-4164 TCGA-BP-4165 
        0.46       111.02        85.48       101.06        32.61        96.85 
TCGA-BP-4325 TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4330 TCGA-BP-4335 TCGA-BP-4344 
       97.45         3.55        27.78        62.07        15.12        54.77 
TCGA-BP-4347 TCGA-BP-4355 TCGA-BP-4758 TCGA-BP-4759 TCGA-BP-4766 TCGA-BP-4768 
       44.94        31.33        72.59        76.41        48.03        13.15 
TCGA-BP-4775 TCGA-BP-4776 TCGA-BP-4965 TCGA-BP-4968 TCGA-BP-4973 TCGA-BP-4976 
       60.56        13.48        61.51        57.37        45.50        53.65 
TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4992 TCGA-BP-4993 TCGA-BP-4995 TCGA-BP-5001 
       36.95        34.32        16.44         5.79        45.07        38.70 
TCGA-BP-5173 TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5183 TCGA-BP-5185 TCGA-BP-5190 
        1.78        74.20        52.27        36.23        37.22        33.21 
TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5202 TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4644 
       23.47        13.41         0.95        75.88        58.92        11.05 
TCGA-CJ-4878 TCGA-CJ-4887 TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4897 TCGA-CJ-4899 
       71.87        21.34        49.97        24.62        59.44        50.20 
TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4916 TCGA-CJ-5675 TCGA-CJ-5683 TCGA-CJ-5684 
       51.25        58.92        45.11        79.86        62.10        73.32 
TCGA-CJ-5686 TCGA-CJ-6032 TCGA-CW-5581 TCGA-CW-5584 TCGA-CW-5585 TCGA-CW-5587 
       67.00        83.77        92.02         5.39        85.78        73.18 
TCGA-CW-6093 TCGA-CZ-4853 TCGA-CZ-4856 TCGA-CZ-4859 TCGA-CZ-4862 TCGA-CZ-4863 
       79.89        25.45         0.59        58.75        60.59        55.56 
TCGA-CZ-4864 TCGA-CZ-4866 TCGA-CZ-5451 TCGA-CZ-5452 TCGA-CZ-5453 TCGA-CZ-5454 
       93.04        58.13        54.84        51.16         0.82        23.74 
TCGA-CZ-5455 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5463 
       18.44        50.86        51.22        49.81        47.01        21.76 
TCGA-CZ-5465 TCGA-CZ-5982 TCGA-CZ-5985 TCGA-CZ-5986 TCGA-CZ-5989 TCGA-DV-5566 
       45.27        67.13        53.56        12.26        52.57        45.96 
TCGA-DV-5569 TCGA-EU-5904 TCGA-EU-5906 TCGA-EU-5907 
       11.67        18.08         6.77         4.14 

$subtype2
TCGA-A3-3308 TCGA-A3-3313 TCGA-A3-3316 TCGA-A3-3317 TCGA-A3-3347 TCGA-A3-3349 
        0.53        24.16        49.08        49.02        36.07        45.53 
TCGA-A3-3362 TCGA-A3-3365 TCGA-A3-3373 TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3461 
       51.25        28.67        10.98        20.25       109.91        28.04 
TCGA-AK-3465 TCGA-B0-4688 TCGA-B0-4697 TCGA-B0-4700 TCGA-B0-4703 TCGA-B0-4811 
       12.13         3.22        18.97        65.06         5.98        39.32 
TCGA-B0-4827 TCGA-B0-4839 TCGA-B0-4945 TCGA-B0-5080 TCGA-B0-5108 TCGA-B0-5119 
       29.06        53.85        70.52         7.30         5.33         1.58 
TCGA-B0-5695 TCGA-B0-5702 TCGA-B0-5709 TCGA-B0-5710 TCGA-B0-5812 TCGA-B4-5836 
       34.26        38.07        77.49        31.46        76.41         4.64 
TCGA-B4-5838 TCGA-B8-4619 TCGA-B8-5162 TCGA-B8-5545 TCGA-B8-5550 TCGA-BP-4160 
        5.46         0.62         0.72         8.15         6.48        94.72 
TCGA-BP-4167 TCGA-BP-4337 TCGA-BP-4341 TCGA-BP-4343 TCGA-BP-4353 TCGA-BP-4762 
       89.36         0.07        52.24        62.86        12.33        44.15 
TCGA-BP-4763 TCGA-BP-4765 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4807 TCGA-BP-4969 
       41.75        71.80        61.68        10.82         6.94        58.98 
TCGA-BP-4971 TCGA-BP-4985 TCGA-BP-4989 TCGA-BP-5004 TCGA-BP-5170 TCGA-BP-5177 
       48.89        31.27         3.85        37.02        79.27         9.63 
TCGA-BP-5181 TCGA-BP-5182 TCGA-BP-5184 TCGA-BP-5186 TCGA-BP-5196 TCGA-BP-5198 
       49.15        38.30        37.25        22.78        33.47        19.82 
TCGA-BP-5199 TCGA-BP-5200 TCGA-CJ-4634 TCGA-CJ-4636 TCGA-CJ-4882 TCGA-CJ-4886 
       44.52        28.96        59.84        63.25        61.91        64.14 
TCGA-CJ-4890 TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4908 TCGA-CJ-4918 TCGA-CJ-4920 
       68.55        49.15        49.25        50.30         3.02         4.57 
TCGA-CJ-5671 TCGA-CJ-5680 TCGA-CJ-6031 TCGA-CW-5583 TCGA-CW-5588 TCGA-CW-6088 
       63.85        25.25        62.63        81.83        66.28        75.98 
TCGA-CW-6090 TCGA-CZ-4860 TCGA-CZ-5988 TCGA-DV-5568 TCGA-DV-5573 TCGA-DV-5575 
       75.88         6.74        22.78        12.16        37.15        33.04 

$subtype3
TCGA-A3-3376 TCGA-AK-3431 TCGA-AK-3458 TCGA-B0-4701 TCGA-B0-4712 TCGA-B0-4810 
       35.18        60.92        38.40         6.84        43.96         8.75 
TCGA-B0-4816 TCGA-B0-4822 TCGA-B0-4823 TCGA-B0-4836 TCGA-B0-4843 TCGA-B0-4848 
       35.54        36.53        14.93        40.70        10.52        29.00 
TCGA-B0-5095 TCGA-B0-5097 TCGA-B0-5100 TCGA-B0-5115 TCGA-B0-5120 TCGA-B0-5691 
        8.05         4.96        62.89         2.96         1.81        91.43 
TCGA-B0-5696 TCGA-B2-5636 TCGA-B4-5378 TCGA-B4-5834 TCGA-B8-5163 TCGA-B8-5165 
       31.04         8.48         5.75         1.25         0.13         0.26 
TCGA-B8-5552 TCGA-BP-4166 TCGA-BP-4169 TCGA-BP-4177 TCGA-BP-4332 TCGA-BP-4342 
        7.20         0.43        23.05        54.90        37.25        74.17 
TCGA-BP-4345 TCGA-BP-4351 TCGA-BP-4760 TCGA-BP-4782 TCGA-BP-4789 TCGA-BP-4790 
       49.84        31.86        73.94        11.64        48.95        36.53 
TCGA-BP-4795 TCGA-BP-4801 TCGA-BP-4970 TCGA-BP-4972 TCGA-BP-4974 TCGA-BP-4998 
       20.38        36.95        14.20        49.35         7.23        30.61 
TCGA-BP-5008 TCGA-BP-5010 TCGA-BP-5187 TCGA-CJ-4642 TCGA-CJ-4871 TCGA-CJ-4872 
       35.21        28.83        13.35        53.16        79.63        47.18 
TCGA-CJ-4885 TCGA-CJ-4889 TCGA-CJ-4902 TCGA-CJ-5676 TCGA-CJ-5682 TCGA-CJ-5689 
       69.86        63.95        49.94        84.66        61.91         0.20 
TCGA-CW-5580 TCGA-CW-5589 TCGA-CZ-4865 TCGA-CZ-5461 TCGA-CZ-5464 TCGA-CZ-5467 
       64.57        78.15         5.42        10.85        49.05         2.40 
TCGA-DV-5565 TCGA-DV-5574 TCGA-DV-5576 TCGA-EU-5905 
       43.69        23.77        23.90         3.88 

$subtype4
TCGA-A3-3319 TCGA-A3-3346 TCGA-A3-3357 TCGA-A3-3363 TCGA-A3-3374 TCGA-A3-3378 
       37.15         4.50        46.85        10.49        43.17        20.71 
TCGA-A3-3382 TCGA-AK-3426 TCGA-AK-3427 TCGA-AK-3430 TCGA-AK-3433 TCGA-AK-3436 
       18.87        29.06        84.36        15.78        72.07        67.17 
TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3445 TCGA-AK-3447 TCGA-AK-3451 TCGA-AK-3453 
       57.34        46.78        42.05        40.01        48.69        39.12 
TCGA-AK-3456 TCGA-AS-3777 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 TCGA-B0-4696 
        1.51         1.32         1.41         4.57         3.48        28.47 
TCGA-B0-4698 TCGA-B0-4699 TCGA-B0-4707 TCGA-B0-4713 TCGA-B0-4718 TCGA-B0-4813 
        1.38         3.58        19.69         6.61         7.04         0.59 
TCGA-B0-4815 TCGA-B0-4817 TCGA-B0-4819 TCGA-B0-4821 TCGA-B0-4834 TCGA-B0-4837 
       49.02        27.88         6.02        40.41        68.71        42.48 
TCGA-B0-4842 TCGA-B0-4844 TCGA-B0-5075 TCGA-B0-5081 TCGA-B0-5083 TCGA-B0-5084 
       53.79        10.29        19.99         7.66        15.29         7.27 
TCGA-B0-5088 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5096 TCGA-B0-5098 TCGA-B0-5107 
       14.24        15.09        10.95         2.20        52.08        30.48 
TCGA-B0-5109 TCGA-B0-5400 TCGA-B0-5697 TCGA-B0-5701 TCGA-B0-5706 TCGA-B0-5707 
       19.27        22.26        37.32        41.95        79.36        85.22 
TCGA-B2-3923 TCGA-B2-4098 TCGA-B2-5641 TCGA-B4-5832 TCGA-B4-5835 TCGA-B8-4143 
        5.85         1.64         5.52         0.23         0.53        23.31 
TCGA-B8-4620 TCGA-B8-4621 TCGA-B8-5158 TCGA-B8-5551 TCGA-BP-4161 TCGA-BP-4163 
        7.43         7.07         2.96         0.49        90.28        93.34 
TCGA-BP-4174 TCGA-BP-4176 TCGA-BP-4326 TCGA-BP-4334 TCGA-BP-4338 TCGA-BP-4346 
       61.78        64.27        53.39        21.21        90.28        49.08 
TCGA-BP-4352 TCGA-BP-4354 TCGA-BP-4756 TCGA-BP-4761 TCGA-BP-4771 TCGA-BP-4777 
       11.31        33.99        12.30         5.98         5.29        56.91 
TCGA-BP-4781 TCGA-BP-4787 TCGA-BP-4797 TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4803 
       68.38        15.75        36.39        10.98        37.25         6.67 
TCGA-BP-4959 TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4967 TCGA-BP-4977 TCGA-BP-4983 
       87.45        58.68        60.30         6.71        14.93        46.42 
TCGA-BP-4988 TCGA-BP-4994 TCGA-BP-5000 TCGA-BP-5009 TCGA-BP-5168 TCGA-BP-5169 
       27.19        42.97        18.51        35.90        48.10         6.31 
TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5189 TCGA-BP-5191 TCGA-BP-5195 
       30.64        62.86        62.20        27.02        31.76        24.59 
TCGA-BP-5201 TCGA-CJ-4635 TCGA-CJ-4637 TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 
       31.27        46.55        73.22        14.17        65.69        54.61 
TCGA-CJ-4869 TCGA-CJ-4873 TCGA-CJ-4876 TCGA-CJ-4884 TCGA-CJ-4888 TCGA-CJ-4891 
       83.97        74.24        64.27        32.65        51.48        26.89 
TCGA-CJ-4894 TCGA-CJ-4895 TCGA-CJ-4901 TCGA-CJ-4912 TCGA-CJ-4923 TCGA-CJ-5672 
       27.65        39.45        47.67        54.44        18.81        72.00 
TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5679 TCGA-CJ-5681 TCGA-CJ-6027 TCGA-CJ-6028 
       25.71        18.84        22.29        18.12        60.99        53.42 
TCGA-CJ-6030 TCGA-CJ-6033 TCGA-CW-5590 TCGA-CW-5591 TCGA-CW-6097 TCGA-CZ-4858 
       75.55         7.36        35.34        74.63        18.74        63.88 
TCGA-CZ-4861 TCGA-CZ-5456 TCGA-CZ-5462 TCGA-CZ-5466 TCGA-CZ-5468 TCGA-CZ-5469 
       14.63        51.22        10.22        22.52         1.94        31.07 
TCGA-CZ-5984 TCGA-CZ-5987 TCGA-DV-5567 
       49.02        14.30        29.88 

subtype1 subtype2 subtype3 subtype4 
    0.10     0.07     0.13     0.23 
subtype1 subtype2 subtype3 subtype4 
  111.02   109.91    91.43    93.34 
subtype1 subtype2 subtype3 subtype4 
  36.640   37.085   31.450   29.060 
[1] "0.1 - 111.0 (36.6)" "0.1 - 109.9 (37.1)" "0.1 - 91.4 (31.4)" 
[4] "0.2 - 93.3 (29.1)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype2" "subtype4" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4" "subtype1"
 [31] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype4"
 [37] "subtype4" "subtype1" "subtype1" "subtype4" "subtype3" "subtype4"
 [43] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
 [49] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype1"
 [55] "subtype4" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
 [61] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [67] "subtype2" "subtype4" "subtype4" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
 [79] "subtype4" "subtype3" "subtype2" "subtype4" "subtype1" "subtype4"
 [85] "subtype3" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype4"
 [97] "subtype3" "subtype4" "subtype1" "subtype2" "subtype1" "subtype4"
[103] "subtype3" "subtype4" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype4" "subtype1" "subtype2"
[115] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
[121] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
[133] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype4" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[151] "subtype4" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
[157] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype2" "subtype4" "subtype1"
[169] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[175] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[181] "subtype3" "subtype4" "subtype2" "subtype2" "subtype1" "subtype1"
[187] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[199] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype4" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype4" "subtype1" "subtype4" "subtype1"
[217] "subtype1" "subtype3" "subtype2" "subtype3" "subtype4" "subtype4"
[223] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[229] "subtype3" "subtype4" "subtype1" "subtype2" "subtype4" "subtype2"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype4" "subtype1"
[241] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype4"
[247] "subtype1" "subtype1" "subtype3" "subtype4" "subtype2" "subtype2"
[253] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype4"
[259] "subtype1" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[265] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[271] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
[277] "subtype1" "subtype4" "subtype1" "subtype2" "subtype3" "subtype2"
[283] "subtype3" "subtype1" "subtype3" "subtype1" "subtype4" "subtype4"
[289] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[295] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
[301] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype4"
[307] "subtype2" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
[313] "subtype4" "subtype4" "subtype2" "subtype2" "subtype1" "subtype2"
[319] "subtype1" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[325] "subtype1" "subtype1" "subtype4" "subtype2" "subtype2" "subtype2"
[331] "subtype2" "subtype4" "subtype1" "subtype2" "subtype4" "subtype2"
[337] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
[343] "subtype1" "subtype1" "subtype4" "subtype3" "subtype3" "subtype4"
[349] "subtype4" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
[355] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype1"
[361] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[367] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype4" "subtype1" "subtype2" "subtype2" "subtype4" "subtype2"
[379] "subtype4" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
[385] "subtype2" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[391] "subtype3" "subtype4" "subtype4" "subtype4" "subtype2" "subtype1"
[397] "subtype4" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[403] "subtype1" "subtype2" "subtype3" "subtype4" "subtype4" "subtype2"
[409] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype4"
[415] "subtype1" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
[421] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[427] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[433] "subtype3" "subtype4" "subtype1" "subtype3" "subtype1" "subtype4"
[439] "subtype3" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[445] "subtype1" "subtype4" "subtype2" "subtype1" "subtype3" "subtype1"
[451] "subtype4" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[457] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype2" "subtype4" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4" "subtype1"
 [31] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype4"
 [37] "subtype4" "subtype1" "subtype1" "subtype4" "subtype3" "subtype4"
 [43] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
 [49] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype1"
 [55] "subtype4" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
 [61] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [67] "subtype2" "subtype4" "subtype4" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
 [79] "subtype4" "subtype3" "subtype2" "subtype4" "subtype1" "subtype4"
 [85] "subtype3" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype4"
 [97] "subtype3" "subtype4" "subtype1" "subtype2" "subtype1" "subtype4"
[103] "subtype3" "subtype4" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype4" "subtype1" "subtype2"
[115] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
[121] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
[133] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype4" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[151] "subtype4" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
[157] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype2" "subtype4" "subtype1"
[169] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[175] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[181] "subtype3" "subtype4" "subtype2" "subtype2" "subtype1" "subtype1"
[187] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[199] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype4" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype4" "subtype1" "subtype4" "subtype1"
[217] "subtype1" "subtype3" "subtype2" "subtype3" "subtype4" "subtype4"
[223] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[229] "subtype3" "subtype4" "subtype1" "subtype2" "subtype4" "subtype2"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype4" "subtype1"
[241] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype4"
[247] "subtype1" "subtype1" "subtype3" "subtype4" "subtype2" "subtype2"
[253] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype4"
[259] "subtype1" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[265] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[271] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
[277] "subtype1" "subtype4" "subtype1" "subtype2" "subtype3" "subtype2"
[283] "subtype3" "subtype1" "subtype3" "subtype1" "subtype4" "subtype4"
[289] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[295] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
[301] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype4"
[307] "subtype2" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
[313] "subtype4" "subtype4" "subtype2" "subtype2" "subtype1" "subtype2"
[319] "subtype1" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[325] "subtype1" "subtype1" "subtype4" "subtype2" "subtype2" "subtype2"
[331] "subtype2" "subtype4" "subtype1" "subtype2" "subtype4" "subtype2"
[337] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
[343] "subtype1" "subtype1" "subtype4" "subtype3" "subtype3" "subtype4"
[349] "subtype4" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
[355] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype1"
[361] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[367] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype4" "subtype1" "subtype2" "subtype2" "subtype4" "subtype2"
[379] "subtype4" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
[385] "subtype2" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[391] "subtype3" "subtype4" "subtype4" "subtype4" "subtype2" "subtype1"
[397] "subtype4" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[403] "subtype1" "subtype2" "subtype3" "subtype4" "subtype4" "subtype2"
[409] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype4"
[415] "subtype1" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
[421] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[427] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[433] "subtype3" "subtype4" "subtype1" "subtype3" "subtype1" "subtype4"
[439] "subtype3" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[445] "subtype1" "subtype4" "subtype2" "subtype1" "subtype3" "subtype1"
[451] "subtype4" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[457] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
  [1] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
  [7] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype4" "subtype2" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype2" "subtype4" "subtype2" "subtype1" "subtype1"
 [25] "subtype1" "subtype2" "subtype4" "subtype3" "subtype4" "subtype1"
 [31] "subtype4" "subtype1" "subtype1" "subtype2" "subtype2" "subtype4"
 [37] "subtype4" "subtype1" "subtype1" "subtype4" "subtype3" "subtype4"
 [43] "subtype1" "subtype4" "subtype4" "subtype4" "subtype1" "subtype4"
 [49] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype1"
 [55] "subtype4" "subtype3" "subtype1" "subtype2" "subtype2" "subtype4"
 [61] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
 [67] "subtype2" "subtype4" "subtype4" "subtype2" "subtype3" "subtype2"
 [73] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
 [79] "subtype4" "subtype3" "subtype2" "subtype4" "subtype1" "subtype4"
 [85] "subtype3" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype4"
 [97] "subtype3" "subtype4" "subtype1" "subtype2" "subtype1" "subtype4"
[103] "subtype3" "subtype4" "subtype1" "subtype1" "subtype1" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype4" "subtype1" "subtype2"
[115] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype4"
[121] "subtype4" "subtype3" "subtype4" "subtype3" "subtype4" "subtype1"
[127] "subtype3" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
[133] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype4" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[151] "subtype4" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
[157] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[163] "subtype1" "subtype1" "subtype1" "subtype2" "subtype4" "subtype1"
[169] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[175] "subtype3" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[181] "subtype3" "subtype4" "subtype2" "subtype2" "subtype1" "subtype1"
[187] "subtype4" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[193] "subtype2" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[199] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[205] "subtype1" "subtype2" "subtype4" "subtype3" "subtype1" "subtype1"
[211] "subtype1" "subtype2" "subtype4" "subtype1" "subtype4" "subtype1"
[217] "subtype1" "subtype3" "subtype2" "subtype3" "subtype4" "subtype4"
[223] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[229] "subtype3" "subtype4" "subtype1" "subtype2" "subtype4" "subtype2"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype4" "subtype1"
[241] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype4"
[247] "subtype1" "subtype1" "subtype3" "subtype4" "subtype2" "subtype2"
[253] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype4"
[259] "subtype1" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[265] "subtype3" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[271] "subtype3" "subtype4" "subtype2" "subtype4" "subtype4" "subtype4"
[277] "subtype1" "subtype4" "subtype1" "subtype2" "subtype3" "subtype2"
[283] "subtype3" "subtype1" "subtype3" "subtype1" "subtype4" "subtype4"
[289] "subtype2" "subtype1" "subtype4" "subtype2" "subtype1" "subtype1"
[295] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype1"
[301] "subtype2" "subtype3" "subtype4" "subtype3" "subtype4" "subtype4"
[307] "subtype2" "subtype1" "subtype1" "subtype4" "subtype1" "subtype2"
[313] "subtype4" "subtype4" "subtype2" "subtype2" "subtype1" "subtype2"
[319] "subtype1" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[325] "subtype1" "subtype1" "subtype4" "subtype2" "subtype2" "subtype2"
[331] "subtype2" "subtype4" "subtype1" "subtype2" "subtype4" "subtype2"
[337] "subtype4" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
[343] "subtype1" "subtype1" "subtype4" "subtype3" "subtype3" "subtype4"
[349] "subtype4" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
[355] "subtype1" "subtype4" "subtype3" "subtype2" "subtype4" "subtype1"
[361] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[367] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype4" "subtype1" "subtype2" "subtype2" "subtype4" "subtype2"
[379] "subtype4" "subtype1" "subtype3" "subtype4" "subtype4" "subtype4"
[385] "subtype2" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[391] "subtype3" "subtype4" "subtype4" "subtype4" "subtype2" "subtype1"
[397] "subtype4" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[403] "subtype1" "subtype2" "subtype3" "subtype4" "subtype4" "subtype2"
[409] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype4"
[415] "subtype1" "subtype2" "subtype4" "subtype1" "subtype1" "subtype1"
[421] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[427] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[433] "subtype3" "subtype4" "subtype1" "subtype3" "subtype1" "subtype4"
[439] "subtype3" "subtype4" "subtype4" "subtype1" "subtype4" "subtype1"
[445] "subtype1" "subtype4" "subtype2" "subtype1" "subtype3" "subtype1"
[451] "subtype4" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[457] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
D6V2, continuous
D6V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   74   98
  subtype2   29   55
  subtype3   18   46
  subtype4   38  105
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       74       29       18       38
  MALE         98       55       46      105
D6V4, continuous
D6V5, multiclass
D6V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   78    2
  subtype2   41    2
  subtype3   26    2
  subtype4   69   10
   clus
vv  subtype1 subtype2 subtype3 subtype4
  0       78       41       26       69
  1        2        2        2       10
D6V7, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  154   18
  subtype2   75    9
  subtype3   53   11
  subtype4  109   34
    clus
vv   subtype1 subtype2 subtype3 subtype4
  M0      154       75       53      109
  M1       18        9       11       34
D6V8, multiclass
D6V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1  171
  subtype2    1   83
  subtype3    0   64
  subtype4    3  140
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        1        0        3
  YES      171       83       64      140

Clustering(7) Variable = MIRSEQ_CHIERARCHICAL
D7V1, survival
          sevent
clus2        0   1
  subtype1  84  15
  subtype2  66  57
  subtype3 162  77
subtype1 subtype2 subtype3 
      99      123      239 
subtype1 subtype2 subtype3 
      15       57       77 
$subtype1
TCGA-A3-3316 TCGA-A3-3320 TCGA-A3-3322 TCGA-A3-3349 TCGA-A3-3362 TCGA-A3-3365 
       49.08        49.58        48.56        45.53        51.25        28.67 
TCGA-A3-3370 TCGA-A3-3373 TCGA-A3-3376 TCGA-A3-3385 TCGA-AK-3444 TCGA-AK-3450 
       25.51        10.98        35.18        23.87        48.36        49.28 
TCGA-AK-3454 TCGA-AK-3461 TCGA-B0-4816 TCGA-B0-4824 TCGA-B0-4945 TCGA-B0-5085 
       28.70        28.04        35.54        48.10        70.52        25.28 
TCGA-B0-5099 TCGA-B0-5110 TCGA-B0-5119 TCGA-B0-5691 TCGA-B0-5693 TCGA-B0-5694 
       15.95        18.41         1.58        91.43        60.89        15.42 
TCGA-B0-5695 TCGA-B0-5700 TCGA-B0-5705 TCGA-B0-5710 TCGA-B0-5712 TCGA-B0-5713 
       34.26        12.33       109.64        31.46        80.15        61.28 
TCGA-B0-5812 TCGA-B2-4102 TCGA-B4-5834 TCGA-B8-4148 TCGA-B8-4154 TCGA-BP-4160 
       76.41         0.49         1.25        12.46         8.38        94.72 
TCGA-BP-4162 TCGA-BP-4165 TCGA-BP-4166 TCGA-BP-4325 TCGA-BP-4341 TCGA-BP-4344 
      101.06        96.85         0.43        97.45        52.24        54.77 
TCGA-BP-4347 TCGA-BP-4353 TCGA-BP-4355 TCGA-BP-4758 TCGA-BP-4765 TCGA-BP-4766 
       44.94        12.33        31.33        72.59        71.80        48.03 
TCGA-BP-4789 TCGA-BP-4965 TCGA-BP-4969 TCGA-BP-4972 TCGA-BP-4995 TCGA-BP-5004 
       48.95        61.51        58.98        49.35        45.07        37.02 
TCGA-BP-5170 TCGA-BP-5174 TCGA-BP-5176 TCGA-BP-5177 TCGA-BP-5181 TCGA-BP-5183 
       79.27        74.20        52.27         9.63        49.15        36.23 
TCGA-BP-5184 TCGA-BP-5185 TCGA-BP-5186 TCGA-BP-5192 TCGA-BP-5194 TCGA-BP-5199 
       37.25        37.22        22.78        23.47        13.41        44.52 
TCGA-BP-5200 TCGA-CJ-4634 TCGA-CJ-4639 TCGA-CJ-4643 TCGA-CJ-4878 TCGA-CJ-4886 
       28.96        59.84        75.88        58.92        71.87        64.14 
TCGA-CJ-4892 TCGA-CJ-4893 TCGA-CJ-4894 TCGA-CJ-4897 TCGA-CJ-4899 TCGA-CJ-4902 
       49.97        24.62        27.65        59.44        50.20        49.94 
TCGA-CJ-4905 TCGA-CJ-4907 TCGA-CJ-4908 TCGA-CJ-4918 TCGA-CJ-4920 TCGA-CJ-5683 
       49.15        49.25        50.30         3.02         4.57        62.10 
TCGA-CJ-6032 TCGA-CW-5583 TCGA-CW-5585 TCGA-CW-6088 TCGA-CW-6093 TCGA-CZ-4853 
       83.77        81.83        85.78        75.98        79.89        25.45 
TCGA-CZ-4863 TCGA-CZ-5451 TCGA-CZ-5453 TCGA-CZ-5455 TCGA-CZ-5467 TCGA-CZ-5982 
       55.56        54.84         0.82        18.44         2.40        67.13 
TCGA-DV-5565 TCGA-DV-5575 TCGA-EU-5904 
       43.69        33.04        18.08 

$subtype2
TCGA-A3-3308 TCGA-A3-3317 TCGA-A3-3347 TCGA-A3-3387 TCGA-AK-3425 TCGA-AK-3426 
        0.53        49.02        36.07        20.25       109.91        29.06 
TCGA-AK-3431 TCGA-AK-3445 TCGA-B0-4688 TCGA-B0-4690 TCGA-B0-4691 TCGA-B0-4694 
       60.92        42.05         3.22         1.41         4.57         3.48 
TCGA-B0-4697 TCGA-B0-4698 TCGA-B0-4700 TCGA-B0-4703 TCGA-B0-4707 TCGA-B0-4712 
       18.97         1.38        65.06         5.98        19.69        43.96 
TCGA-B0-4811 TCGA-B0-4813 TCGA-B0-4815 TCGA-B0-4819 TCGA-B0-4822 TCGA-B0-4823 
       39.32         0.59        49.02         6.02        36.53        14.93 
TCGA-B0-4827 TCGA-B0-4836 TCGA-B0-4837 TCGA-B0-4843 TCGA-B0-4844 TCGA-B0-4848 
       29.06        40.70        42.48        10.52        10.29        29.00 
TCGA-B0-5080 TCGA-B0-5081 TCGA-B0-5084 TCGA-B0-5095 TCGA-B0-5096 TCGA-B0-5097 
        7.30         7.66         7.27         8.05         2.20         4.96 
TCGA-B0-5098 TCGA-B0-5100 TCGA-B0-5108 TCGA-B0-5109 TCGA-B0-5120 TCGA-B0-5400 
       52.08        62.89         5.33        19.27         1.81        22.26 
TCGA-B0-5702 TCGA-B0-5709 TCGA-B2-5636 TCGA-B4-5378 TCGA-B4-5838 TCGA-B8-4143 
       38.07        77.49         8.48         5.75         5.46        23.31 
TCGA-B8-4620 TCGA-B8-5162 TCGA-B8-5163 TCGA-B8-5545 TCGA-B8-5550 TCGA-B8-5551 
        7.43         0.72         0.13         8.15         6.48         0.49 
TCGA-B8-5552 TCGA-BP-4169 TCGA-BP-4176 TCGA-BP-4177 TCGA-BP-4326 TCGA-BP-4332 
        7.20        23.05        64.27        54.90        53.39        37.25 
TCGA-BP-4337 TCGA-BP-4342 TCGA-BP-4343 TCGA-BP-4345 TCGA-BP-4352 TCGA-BP-4354 
        0.07        74.17        62.86        49.84        11.31        33.99 
TCGA-BP-4760 TCGA-BP-4762 TCGA-BP-4763 TCGA-BP-4769 TCGA-BP-4770 TCGA-BP-4782 
       73.94        44.15        41.75        61.68        10.82        11.64 
TCGA-BP-4787 TCGA-BP-4790 TCGA-BP-4795 TCGA-BP-4798 TCGA-BP-4799 TCGA-BP-4801 
       15.75        36.53        20.38        10.98        37.25        36.95 
TCGA-BP-4803 TCGA-BP-4807 TCGA-BP-4970 TCGA-BP-4971 TCGA-BP-4983 TCGA-BP-4985 
        6.67         6.94        14.20        48.89        46.42        31.27 
TCGA-BP-4988 TCGA-BP-4989 TCGA-BP-4998 TCGA-BP-5008 TCGA-BP-5010 TCGA-BP-5169 
       27.19         3.85        30.61        35.21        28.83         6.31 
TCGA-BP-5182 TCGA-BP-5196 TCGA-BP-5198 TCGA-CJ-4635 TCGA-CJ-4637 TCGA-CJ-4642 
       38.30        33.47        19.82        46.55        73.22        53.16 
TCGA-CJ-4871 TCGA-CJ-4872 TCGA-CJ-4882 TCGA-CJ-4889 TCGA-CJ-4890 TCGA-CJ-4895 
       79.63        47.18        61.91        63.95        68.55        39.45 
TCGA-CJ-4901 TCGA-CJ-4923 TCGA-CJ-5671 TCGA-CJ-5676 TCGA-CJ-5679 TCGA-CJ-5689 
       47.67        18.81        63.85        84.66        22.29         0.20 
TCGA-CJ-6027 TCGA-CJ-6031 TCGA-CJ-6033 TCGA-CW-5588 TCGA-CW-6090 TCGA-CW-6097 
       60.99        62.63         7.36        66.28        75.88        18.74 
TCGA-CZ-4858 TCGA-CZ-4860 TCGA-CZ-5456 TCGA-CZ-5988 TCGA-DV-5567 TCGA-DV-5573 
       63.88         6.74        51.22        22.78        29.88        37.15 
TCGA-DV-5574 TCGA-DV-5576 TCGA-EU-5905 
       23.77        23.90         3.88 

$subtype3
TCGA-A3-3307 TCGA-A3-3311 TCGA-A3-3313 TCGA-A3-3319 TCGA-A3-3323 TCGA-A3-3324 
       47.21        39.12        24.16        37.15        36.33        38.99 
TCGA-A3-3326 TCGA-A3-3331 TCGA-A3-3346 TCGA-A3-3351 TCGA-A3-3357 TCGA-A3-3358 
       37.38        48.82         4.50        29.92        46.85        42.97 
TCGA-A3-3363 TCGA-A3-3367 TCGA-A3-3372 TCGA-A3-3374 TCGA-A3-3378 TCGA-A3-3380 
       10.49        34.65        24.16        43.17        20.71        18.64 
TCGA-A3-3382 TCGA-A3-3383 TCGA-AK-3427 TCGA-AK-3428 TCGA-AK-3429 TCGA-AK-3430 
       18.87        28.31        84.36        73.08        66.31        15.78 
TCGA-AK-3433 TCGA-AK-3434 TCGA-AK-3436 TCGA-AK-3440 TCGA-AK-3443 TCGA-AK-3447 
       72.07        68.58        67.17        57.34        46.78        40.01 
TCGA-AK-3451 TCGA-AK-3453 TCGA-AK-3455 TCGA-AK-3456 TCGA-AK-3458 TCGA-AK-3460 
       48.69        39.12        22.45         1.51        38.40        31.27 
TCGA-AK-3465 TCGA-AS-3777 TCGA-B0-4693 TCGA-B0-4696 TCGA-B0-4699 TCGA-B0-4701 
       12.13         1.32         2.53        28.47         3.58         6.84 
TCGA-B0-4706 TCGA-B0-4710 TCGA-B0-4713 TCGA-B0-4714 TCGA-B0-4718 TCGA-B0-4810 
        0.85         0.16         6.61         0.10         7.04         8.75 
TCGA-B0-4814 TCGA-B0-4817 TCGA-B0-4818 TCGA-B0-4821 TCGA-B0-4828 TCGA-B0-4833 
        1.55        27.88        14.01        40.41        10.09        78.41 
TCGA-B0-4834 TCGA-B0-4838 TCGA-B0-4839 TCGA-B0-4841 TCGA-B0-4842 TCGA-B0-4845 
       68.71        23.93        53.85         4.57        53.79        65.26 
TCGA-B0-4846 TCGA-B0-4847 TCGA-B0-4849 TCGA-B0-4852 TCGA-B0-5075 TCGA-B0-5077 
       39.42        26.04         2.27        35.47        19.99        42.44 
TCGA-B0-5083 TCGA-B0-5088 TCGA-B0-5092 TCGA-B0-5094 TCGA-B0-5102 TCGA-B0-5104 
       15.29        14.24        15.09        10.95        90.84        90.44 
TCGA-B0-5106 TCGA-B0-5107 TCGA-B0-5113 TCGA-B0-5115 TCGA-B0-5116 TCGA-B0-5121 
       52.50        30.48         0.72         2.96         3.39         6.12 
TCGA-B0-5399 TCGA-B0-5402 TCGA-B0-5690 TCGA-B0-5692 TCGA-B0-5696 TCGA-B0-5697 
        6.25         0.33        71.67        48.89        31.04        37.32 
TCGA-B0-5698 TCGA-B0-5699 TCGA-B0-5701 TCGA-B0-5703 TCGA-B0-5706 TCGA-B0-5707 
       71.70        79.73        41.95         8.61        79.36        85.22 
TCGA-B0-5711 TCGA-B2-3923 TCGA-B2-3924 TCGA-B2-4098 TCGA-B2-4099 TCGA-B2-4101 
       83.93         5.85         6.38         1.64         3.62         2.96 
TCGA-B2-5633 TCGA-B2-5635 TCGA-B2-5639 TCGA-B2-5641 TCGA-B4-5377 TCGA-B4-5832 
        7.04        10.36         6.28         5.52         9.57         0.23 
TCGA-B4-5835 TCGA-B4-5836 TCGA-B4-5843 TCGA-B4-5844 TCGA-B8-4146 TCGA-B8-4151 
        0.53         4.64         0.36         0.23        16.80         9.17 
TCGA-B8-4153 TCGA-B8-4619 TCGA-B8-4621 TCGA-B8-4622 TCGA-B8-5158 TCGA-B8-5159 
       13.28         0.62         7.07         5.95         2.96         4.37 
TCGA-B8-5164 TCGA-B8-5165 TCGA-B8-5546 TCGA-B8-5549 TCGA-B8-5553 TCGA-BP-4158 
        0.76         0.26         0.46         6.38         0.46       111.02 
TCGA-BP-4159 TCGA-BP-4161 TCGA-BP-4163 TCGA-BP-4164 TCGA-BP-4167 TCGA-BP-4174 
       85.48        90.28        93.34        32.61        89.36        61.78 
TCGA-BP-4327 TCGA-BP-4329 TCGA-BP-4330 TCGA-BP-4334 TCGA-BP-4335 TCGA-BP-4338 
        3.55        27.78        62.07        21.21        15.12        90.28 
TCGA-BP-4346 TCGA-BP-4351 TCGA-BP-4756 TCGA-BP-4759 TCGA-BP-4761 TCGA-BP-4768 
       49.08        31.86        12.30        76.41         5.98        13.15 
TCGA-BP-4771 TCGA-BP-4775 TCGA-BP-4776 TCGA-BP-4777 TCGA-BP-4781 TCGA-BP-4797 
        5.29        60.56        13.48        56.91        68.38        36.39 
TCGA-BP-4959 TCGA-BP-4962 TCGA-BP-4963 TCGA-BP-4967 TCGA-BP-4968 TCGA-BP-4973 
       87.45        58.68        60.30         6.71        57.37        45.50 
TCGA-BP-4974 TCGA-BP-4976 TCGA-BP-4977 TCGA-BP-4987 TCGA-BP-4991 TCGA-BP-4992 
        7.23        53.65        14.93        36.95        34.32        16.44 
TCGA-BP-4993 TCGA-BP-4994 TCGA-BP-5000 TCGA-BP-5001 TCGA-BP-5009 TCGA-BP-5168 
        5.79        42.97        18.51        38.70        35.90        48.10 
TCGA-BP-5173 TCGA-BP-5175 TCGA-BP-5178 TCGA-BP-5180 TCGA-BP-5187 TCGA-BP-5189 
        1.78        30.64        62.86        62.20        13.35        27.02 
TCGA-BP-5190 TCGA-BP-5191 TCGA-BP-5195 TCGA-BP-5201 TCGA-BP-5202 TCGA-CJ-4636 
       33.21        31.76        24.59        31.27         0.95        63.25 
TCGA-CJ-4638 TCGA-CJ-4640 TCGA-CJ-4641 TCGA-CJ-4644 TCGA-CJ-4869 TCGA-CJ-4873 
       14.17        65.69        54.61        11.05        83.97        74.24 
TCGA-CJ-4876 TCGA-CJ-4884 TCGA-CJ-4885 TCGA-CJ-4887 TCGA-CJ-4888 TCGA-CJ-4891 
       64.27        32.65        69.86        21.34        51.48        26.89 
TCGA-CJ-4903 TCGA-CJ-4904 TCGA-CJ-4912 TCGA-CJ-4916 TCGA-CJ-5672 TCGA-CJ-5675 
       51.25        58.92        54.44        45.11        72.00        79.86 
TCGA-CJ-5677 TCGA-CJ-5678 TCGA-CJ-5680 TCGA-CJ-5681 TCGA-CJ-5682 TCGA-CJ-5684 
       25.71        18.84        25.25        18.12        61.91        73.32 
TCGA-CJ-5686 TCGA-CJ-6028 TCGA-CJ-6030 TCGA-CW-5580 TCGA-CW-5581 TCGA-CW-5584 
       67.00        53.42        75.55        64.57        92.02         5.39 
TCGA-CW-5587 TCGA-CW-5589 TCGA-CW-5590 TCGA-CW-5591 TCGA-CZ-4856 TCGA-CZ-4859 
       73.18        78.15        35.34        74.63         0.59        58.75 
TCGA-CZ-4861 TCGA-CZ-4862 TCGA-CZ-4864 TCGA-CZ-4865 TCGA-CZ-4866 TCGA-CZ-5452 
       14.63        60.59        93.04         5.42        58.13        51.16 
TCGA-CZ-5454 TCGA-CZ-5457 TCGA-CZ-5458 TCGA-CZ-5459 TCGA-CZ-5460 TCGA-CZ-5461 
       23.74        50.86        51.22        49.81        47.01        10.85 
TCGA-CZ-5462 TCGA-CZ-5463 TCGA-CZ-5464 TCGA-CZ-5465 TCGA-CZ-5466 TCGA-CZ-5468 
       10.22        21.76        49.05        45.27        22.52         1.94 
TCGA-CZ-5469 TCGA-CZ-5984 TCGA-CZ-5985 TCGA-CZ-5986 TCGA-CZ-5987 TCGA-CZ-5989 
       31.07        49.02        53.56        12.26        14.30        52.57 
TCGA-DV-5566 TCGA-DV-5568 TCGA-DV-5569 TCGA-EU-5906 TCGA-EU-5907 
       45.96        12.16        11.67         6.77         4.14 

subtype1 subtype2 subtype3 
    0.43     0.07     0.10 
subtype1 subtype2 subtype3 
  109.64   109.91   111.02 
subtype1 subtype2 subtype3 
   48.36    28.83    31.07 
[1] "0.4 - 109.6 (48.4)" "0.1 - 109.9 (28.8)" "0.1 - 111.0 (31.1)"
  [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
  [7] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[163] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[235] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[241] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[247] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[253] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[259] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[283] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[295] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[301] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[307] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[313] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[325] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[331] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[337] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[343] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[349] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[355] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[361] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[367] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[373] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[379] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[385] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[391] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[397] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[403] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[421] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[433] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[439] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[445] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[451] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[457] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
  [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
  [7] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[163] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[235] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[241] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[247] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[253] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[259] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[283] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[295] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[301] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[307] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[313] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[325] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[331] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[337] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[343] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[349] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[355] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[361] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[367] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[373] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[379] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[385] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[391] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[397] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[403] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[421] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[433] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[439] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[445] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[451] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[457] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
  [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
  [7] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [19] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [25] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [61] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [73] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [85] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[133] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[139] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[163] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[169] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[187] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[193] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[199] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[205] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[223] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[229] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[235] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[241] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[247] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[253] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
[259] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[265] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[271] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[277] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[283] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[289] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[295] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype3"
[301] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[307] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[313] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[319] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[325] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
[331] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[337] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[343] "subtype1" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[349] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype1"
[355] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
[361] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[367] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[373] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[379] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[385] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[391] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[397] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[403] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[415] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[421] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[427] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[433] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[439] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[445] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[451] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[457] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
D7V2, continuous
D7V3, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   51   48
  subtype2   36   87
  subtype3   72  169
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       51       36       72
  MALE         48       87      169
D7V4, continuous
D7V5, multiclass
D7V6, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   43    0
  subtype2   54    8
  subtype3  117    8
   clus
vv  subtype1 subtype2 subtype3
  0       43       54      117
  1        0        8        8
D7V7, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   95    4
  subtype2   99   24
  subtype3  197   44
    clus
vv   subtype1 subtype2 subtype3
  M0       95       99      197
  M1        4       24       44
D7V8, multiclass
D7V9, binary
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   99
  subtype2    0  123
  subtype3    5  236
     clus
vv    subtype1 subtype2 subtype3
  NO         0        0        5
  YES       99      123      236
                         V1.D                            V2 
              "Time to Death"                         "AGE" 
                           V3                            V4 
                     "GENDER" "KARNOFSKY.PERFORMANCE.SCORE" 
                           V5                            V6 
                "PATHOLOGY.T"                 "PATHOLOGY.N" 
                           V7                            V8 
        "PATHOLOGICSPREAD(M)"                 "TUMOR.STAGE" 
                           V9 
        "NEOADJUVANT.THERAPY" 
> q(save="no")
